BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0178.p (556 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003981312.1| NADP-dependent malic enzyme 3 [Achromobacter... 985 0.0 gb|EGP47612.1| NADP-dependent malic enzyme 3 [Achromobacter xylo... 981 0.0 gb|AEE66469.1| malic enzyme [Bordetella pertussis CS] 979 0.0 gb|EFV84320.1| NADP-dependent malic enzyme [Achromobacter xyloso... 978 0.0 ref|NP_887475.1| malic enzyme [Bordetella bronchiseptica RB50] >... 978 0.0 >ref|YP_003981312.1| NADP-dependent malic enzyme 3 [Achromobacter xylosoxidans A8] gb|ADP18597.1| NADP-dependent malic enzyme 3 [Achromobacter xylosoxidans A8] Length = 766 Score = 985 bits (2547), Expect = 0.0, Method: Compositional matrix adjust. Identities = 471/554 (85%), Positives = 514/554 (92%) Query: 1 MDLGLPLENIWVTDIEGVVYEGRATLMDPDKERYARKTDLRTLAQVIEGADVFLGVSAGN 60 +DLGLPLEN+WVTDIEGVVYEGR LMDPDK R+A+KT+ R LA+VI+ ADVFLG+SAG Sbjct: 208 VDLGLPLENVWVTDIEGVVYEGRTVLMDPDKARFAQKTEARKLAEVIQDADVFLGLSAGG 267 Query: 61 VLKKEMVATMAARPLILALANPTPEILPEVALSVRDDIVMATGRSDYPNQVNNVLCFPYI 120 VLK EMVA M RPLILALANPTPEILPEVA SVRDD+VMATGRSDYPNQVNNVLCFPYI Sbjct: 268 VLKPEMVAAMGPRPLILALANPTPEILPEVAQSVRDDVVMATGRSDYPNQVNNVLCFPYI 327 Query: 121 FRGALDVGATTITREMEIAAVYAIAGLAEEEQNDVVAAAYGSYDLSFGPEYFIPKPFDPR 180 FRGALDVGATTITREME AAVYAIA LAEEEQN+VVAAAYG+YD+SFGPEY IPKPFDPR Sbjct: 328 FRGALDVGATTITREMEKAAVYAIAELAEEEQNEVVAAAYGTYDISFGPEYLIPKPFDPR 387 Query: 181 LIVRIAPAVAKAAMEGGVATRPIADLDAYVEQLQQFVYHSGAFMKPLFAAAKQRVRDGDK 240 LIVRIAPAVAKAAMEGGVATRP+ADL+AY EQLQQFVYHSGAFMKPLF+AAK+ VR+G K Sbjct: 388 LIVRIAPAVAKAAMEGGVATRPLADLEAYEEQLQQFVYHSGAFMKPLFSAAKRIVREGGK 447 Query: 241 ARIVFTEGEDERVLRAVQVIVDEKLARPILVGRPEVLLARIQKFGLRLRLGQDVEVTSPD 300 ARIVFTEGEDERVLRAVQVIVDE LARPILVGRP VLL+RI+KFGLRLRLG+DVEVT+P+ Sbjct: 448 ARIVFTEGEDERVLRAVQVIVDEGLARPILVGRPAVLLSRIEKFGLRLRLGEDVEVTNPE 507 Query: 301 YDERFHQYWTTYWDLMCREGITKEMARVEMRRRLTLIGAMMVRLGDADGMICGTVGAYHD 360 YDERFHQYWTTYW+LMCR GITKEMARVEMRRRLTLIGAMMV LGDADGM+CGTVGAYHD Sbjct: 508 YDERFHQYWTTYWELMCRRGITKEMARVEMRRRLTLIGAMMVHLGDADGMVCGTVGAYHD 567 Query: 361 HLRYVDQVIGKKPGANTYAAMNILLLDQRTVALVDTHVNDDPSAEQIAEFTIAAAEEMTW 420 HLR+VD+VIG++PG N YAAMNILLL++RTV LVDTHVND+PSAEQIAEFT+ AA+EM Sbjct: 568 HLRFVDEVIGRRPGHNVYAAMNILLLNERTVVLVDTHVNDEPSAEQIAEFTVMAAQEMAR 627 Query: 421 LNLEPKAALLSRSNFGSASSASGGKMRRALDIITERAPTLEVDGEMHGDCALDEALRLQI 480 +NL PK ALLSRSNFGS SSASG KMRRAL+++ + AP LE+DGEMHGDCALDEALR++I Sbjct: 628 MNLAPKVALLSRSNFGSGSSASGAKMRRALELVRQAAPDLEIDGEMHGDCALDEALRMRI 687 Query: 481 LPSSRLKGSANLLVCPNVDAGNIAYNLLKTAAGSNVAVGPFLLGVNAPVHILTSSSTVRR 540 LPSS LKG ANLLVCPNVD+GNIAYNLLKTAAG NVAVGPFLLG NAPVHILTSSSTVRR Sbjct: 688 LPSSSLKGQANLLVCPNVDSGNIAYNLLKTAAGGNVAVGPFLLGANAPVHILTSSSTVRR 747 Query: 541 IINMAALTVLDANR 554 IINM A+TVLDANR Sbjct: 748 IINMTAMTVLDANR 761 >gb|EGP47612.1| NADP-dependent malic enzyme 3 [Achromobacter xylosoxidans AXX-A] Length = 764 Score = 981 bits (2535), Expect = 0.0, Method: Compositional matrix adjust. Identities = 474/554 (85%), Positives = 512/554 (92%) Query: 1 MDLGLPLENIWVTDIEGVVYEGRATLMDPDKERYARKTDLRTLAQVIEGADVFLGVSAGN 60 +DLGLPLENIWVTDIEGVVYEGR LMDPDK R+ +KTD R LA+VI+GADVFLG+SAG Sbjct: 208 VDLGLPLENIWVTDIEGVVYEGRTVLMDPDKARFTQKTDARKLAEVIDGADVFLGLSAGG 267 Query: 61 VLKKEMVATMAARPLILALANPTPEILPEVALSVRDDIVMATGRSDYPNQVNNVLCFPYI 120 VLK EMVA M RPLILALANPTPEILPEVA VRDD+VMATGRSDYPNQVNNVLCFPYI Sbjct: 268 VLKPEMVAKMGPRPLILALANPTPEILPEVAHGVRDDVVMATGRSDYPNQVNNVLCFPYI 327 Query: 121 FRGALDVGATTITREMEIAAVYAIAGLAEEEQNDVVAAAYGSYDLSFGPEYFIPKPFDPR 180 FRGALDVGATTITREME AAVYAIA LAEEEQN+VVAAAYG+YD+SFGPEY IPKPFDPR Sbjct: 328 FRGALDVGATTITREMEKAAVYAIAELAEEEQNEVVAAAYGTYDISFGPEYLIPKPFDPR 387 Query: 181 LIVRIAPAVAKAAMEGGVATRPIADLDAYVEQLQQFVYHSGAFMKPLFAAAKQRVRDGDK 240 LIVRIAPAVAKAAMEGGVATRP+ADL+AY EQLQQFVYHSGAFMKPLF+AAK+ VR+G K Sbjct: 388 LIVRIAPAVAKAAMEGGVATRPLADLEAYEEQLQQFVYHSGAFMKPLFSAAKRIVRNGGK 447 Query: 241 ARIVFTEGEDERVLRAVQVIVDEKLARPILVGRPEVLLARIQKFGLRLRLGQDVEVTSPD 300 +RIVFTEGEDERVLRAVQVIVDE +ARPILVGRP VLL+RI+KFGLRLRLG+DVEVT+P+ Sbjct: 448 SRIVFTEGEDERVLRAVQVIVDEGVARPILVGRPAVLLSRIEKFGLRLRLGEDVEVTNPE 507 Query: 301 YDERFHQYWTTYWDLMCREGITKEMARVEMRRRLTLIGAMMVRLGDADGMICGTVGAYHD 360 YDERFHQYWTTYW+LMCR GITKEMARVEMRRRLTLIGAMMV LGDADGM+CGTVGAYHD Sbjct: 508 YDERFHQYWTTYWELMCRRGITKEMARVEMRRRLTLIGAMMVHLGDADGMVCGTVGAYHD 567 Query: 361 HLRYVDQVIGKKPGANTYAAMNILLLDQRTVALVDTHVNDDPSAEQIAEFTIAAAEEMTW 420 HLR+VD+VIG++PGAN YAAMNILLL++RTV LVDTHVND+PSAEQIAEFTIAAA E+ Sbjct: 568 HLRFVDEVIGRRPGANVYAAMNILLLNERTVVLVDTHVNDEPSAEQIAEFTIAAAREVGR 627 Query: 421 LNLEPKAALLSRSNFGSASSASGGKMRRALDIITERAPTLEVDGEMHGDCALDEALRLQI 480 + L PK ALLSRSNFGS SSASG KMRRAL+++ E AP LE+DGEMHGDCALDEALRL+I Sbjct: 628 MFLAPKVALLSRSNFGSGSSASGAKMRRALELVREAAPELEIDGEMHGDCALDEALRLRI 687 Query: 481 LPSSRLKGSANLLVCPNVDAGNIAYNLLKTAAGSNVAVGPFLLGVNAPVHILTSSSTVRR 540 LPSS LKG ANLLVCPNVDAGNIAYNLLKTAAG NVAVGP LLG NAPVHILTSSSTVRR Sbjct: 688 LPSSTLKGEANLLVCPNVDAGNIAYNLLKTAAGGNVAVGPILLGANAPVHILTSSSTVRR 747 Query: 541 IINMAALTVLDANR 554 IINM ALTVLDANR Sbjct: 748 IINMTALTVLDANR 761 >gb|AEE66469.1| malic enzyme [Bordetella pertussis CS] Length = 762 Score = 979 bits (2531), Expect = 0.0, Method: Compositional matrix adjust. Identities = 470/553 (84%), Positives = 511/553 (92%) Query: 1 MDLGLPLENIWVTDIEGVVYEGRATLMDPDKERYARKTDLRTLAQVIEGADVFLGVSAGN 60 +DLGLPLE+IWVTDIEGVVYEGR LMD DKER+ARKT RTLA+VIEGADVFLG+SAGN Sbjct: 207 VDLGLPLEHIWVTDIEGVVYEGRKKLMDADKERFARKTKARTLAEVIEGADVFLGLSAGN 266 Query: 61 VLKKEMVATMAARPLILALANPTPEILPEVALSVRDDIVMATGRSDYPNQVNNVLCFPYI 120 VLK EMVATMAA PLILALANP PEILPE A +VRDDIVMATGRSDYPNQVNNVLCFPYI Sbjct: 267 VLKPEMVATMAANPLILALANPNPEILPEAAHAVRDDIVMATGRSDYPNQVNNVLCFPYI 326 Query: 121 FRGALDVGATTITREMEIAAVYAIAGLAEEEQNDVVAAAYGSYDLSFGPEYFIPKPFDPR 180 FRGALDVGATTITREME AAV AIA LA EEQN+VVAAAYG+YD+SFG +Y IPKPFDPR Sbjct: 327 FRGALDVGATTITREMEKAAVLAIASLAREEQNEVVAAAYGTYDISFGRDYLIPKPFDPR 386 Query: 181 LIVRIAPAVAKAAMEGGVATRPIADLDAYVEQLQQFVYHSGAFMKPLFAAAKQRVRDGDK 240 LIVRIAPAVAKAAMEGGVATRPIADLDAY EQLQQFVYHSGAFMKPLF+ AKQ VRDG + Sbjct: 387 LIVRIAPAVAKAAMEGGVATRPIADLDAYAEQLQQFVYHSGAFMKPLFSQAKQIVRDGGR 446 Query: 241 ARIVFTEGEDERVLRAVQVIVDEKLARPILVGRPEVLLARIQKFGLRLRLGQDVEVTSPD 300 ARIVFTEGEDERVLRAVQVIVDEK+A+PILVGRP+VLL+RI+KFGLRLRLGQDVEV +P+ Sbjct: 447 ARIVFTEGEDERVLRAVQVIVDEKVAKPILVGRPQVLLSRIEKFGLRLRLGQDVEVCNPE 506 Query: 301 YDERFHQYWTTYWDLMCREGITKEMARVEMRRRLTLIGAMMVRLGDADGMICGTVGAYHD 360 YDERFHQYWTTYWD+MCR GITKEMARVEMRRRLTLIGAMMV LGDADGMICG V +HD Sbjct: 507 YDERFHQYWTTYWDMMCRNGITKEMARVEMRRRLTLIGAMMVHLGDADGMICGAVSGFHD 566 Query: 361 HLRYVDQVIGKKPGANTYAAMNILLLDQRTVALVDTHVNDDPSAEQIAEFTIAAAEEMTW 420 HLR++D+VIG+KPGA TYAAMNILLL++RTVALVDTHVNDDPSAEQIAE+T+AAAEEM Sbjct: 567 HLRFIDEVIGRKPGAQTYAAMNILLLNERTVALVDTHVNDDPSAEQIAEYTVAAAEEMRR 626 Query: 421 LNLEPKAALLSRSNFGSASSASGGKMRRALDIITERAPTLEVDGEMHGDCALDEALRLQI 480 LNL PK ALLSRSNFG+ SSASG KMRRAL+++ ERAP LE+DGEMHGDCALDEALRL+I Sbjct: 627 LNLAPKVALLSRSNFGTGSSASGAKMRRALELVRERAPELEIDGEMHGDCALDEALRLRI 686 Query: 481 LPSSRLKGSANLLVCPNVDAGNIAYNLLKTAAGSNVAVGPFLLGVNAPVHILTSSSTVRR 540 LPSS LKG ANLLVCPNVD+GNIAYNLLKT AG NVAVGPFLLG NA VHILTSSSTVRR Sbjct: 687 LPSSTLKGEANLLVCPNVDSGNIAYNLLKTTAGGNVAVGPFLLGANAAVHILTSSSTVRR 746 Query: 541 IINMAALTVLDAN 553 I+NMAA+ V++A+ Sbjct: 747 IVNMAAMAVVNAD 759 >gb|EFV84320.1| NADP-dependent malic enzyme [Achromobacter xylosoxidans C54] Length = 764 Score = 978 bits (2529), Expect = 0.0, Method: Compositional matrix adjust. Identities = 472/554 (85%), Positives = 510/554 (92%) Query: 1 MDLGLPLENIWVTDIEGVVYEGRATLMDPDKERYARKTDLRTLAQVIEGADVFLGVSAGN 60 +DLGLPLENIWVTDIEGVVYEGR LMDPDK R+ +KTD R LA+VIEGADVFLG+SAG Sbjct: 208 VDLGLPLENIWVTDIEGVVYEGRTVLMDPDKARFTQKTDARKLAEVIEGADVFLGLSAGG 267 Query: 61 VLKKEMVATMAARPLILALANPTPEILPEVALSVRDDIVMATGRSDYPNQVNNVLCFPYI 120 VLK EMVA M RPLILALANPTPEILPEVA VRDD+VMATGRSDYPNQVNNVLCFPYI Sbjct: 268 VLKPEMVAKMGPRPLILALANPTPEILPEVAHGVRDDVVMATGRSDYPNQVNNVLCFPYI 327 Query: 121 FRGALDVGATTITREMEIAAVYAIAGLAEEEQNDVVAAAYGSYDLSFGPEYFIPKPFDPR 180 FRGALDVGATTITREME AAVYAIA LAEEEQN+VVAAAYG+YD+SFGPEY IPKPFDPR Sbjct: 328 FRGALDVGATTITREMEKAAVYAIAELAEEEQNEVVAAAYGTYDISFGPEYLIPKPFDPR 387 Query: 181 LIVRIAPAVAKAAMEGGVATRPIADLDAYVEQLQQFVYHSGAFMKPLFAAAKQRVRDGDK 240 LIVRIAPAVAKAAMEGGVATRP+ADL+AY EQLQQFVYHSGAFMKPLF+AAK+ VR G K Sbjct: 388 LIVRIAPAVAKAAMEGGVATRPLADLEAYEEQLQQFVYHSGAFMKPLFSAAKRIVRGGGK 447 Query: 241 ARIVFTEGEDERVLRAVQVIVDEKLARPILVGRPEVLLARIQKFGLRLRLGQDVEVTSPD 300 +RIVFTEGEDERVLRAVQVIVDE LARPILVGRP VLL+RI+KFGLRLRLG+DVEVT+P+ Sbjct: 448 SRIVFTEGEDERVLRAVQVIVDEGLARPILVGRPAVLLSRIEKFGLRLRLGEDVEVTNPE 507 Query: 301 YDERFHQYWTTYWDLMCREGITKEMARVEMRRRLTLIGAMMVRLGDADGMICGTVGAYHD 360 YDERFHQYWTTYW+LMCR GITKEMARVEMRRRLTLIGAMMV LGDADGM+CGTVGAYHD Sbjct: 508 YDERFHQYWTTYWELMCRRGITKEMARVEMRRRLTLIGAMMVHLGDADGMVCGTVGAYHD 567 Query: 361 HLRYVDQVIGKKPGANTYAAMNILLLDQRTVALVDTHVNDDPSAEQIAEFTIAAAEEMTW 420 HLR+VD+VIG++PGAN YAAMNILLL++RTV LVDTHVND+P+AEQIAEFTIAAA+EM Sbjct: 568 HLRFVDEVIGRRPGANVYAAMNILLLNERTVVLVDTHVNDEPTAEQIAEFTIAAAKEMQR 627 Query: 421 LNLEPKAALLSRSNFGSASSASGGKMRRALDIITERAPTLEVDGEMHGDCALDEALRLQI 480 + L PK ALLSRSNFGS SSASG KMRRAL+++ + P LE+DGEMHGDCALDEALRL+I Sbjct: 628 MFLAPKVALLSRSNFGSGSSASGAKMRRALELVRQAEPELEIDGEMHGDCALDEALRLRI 687 Query: 481 LPSSRLKGSANLLVCPNVDAGNIAYNLLKTAAGSNVAVGPFLLGVNAPVHILTSSSTVRR 540 LP S LKG ANLLVCPNVDAGNIAYNLLKTAAG NVAVGP LLG NAPVHILTSSSTVRR Sbjct: 688 LPFSTLKGEANLLVCPNVDAGNIAYNLLKTAAGGNVAVGPILLGANAPVHILTSSSTVRR 747 Query: 541 IINMAALTVLDANR 554 IINM A+TVLDANR Sbjct: 748 IINMTAMTVLDANR 761 >ref|NP_887475.1| malic enzyme [Bordetella bronchiseptica RB50] emb|CAE31425.1| NADP-dependent malic enzyme [Bordetella bronchiseptica RB50] Length = 762 Score = 978 bits (2528), Expect = 0.0, Method: Compositional matrix adjust. Identities = 470/555 (84%), Positives = 510/555 (91%) Query: 1 MDLGLPLENIWVTDIEGVVYEGRATLMDPDKERYARKTDLRTLAQVIEGADVFLGVSAGN 60 +DLGLPLE+IWVTDIEGVVYEGR LMD DKER+ARKT RTLA+VIEGADVFLG+SAGN Sbjct: 207 VDLGLPLEHIWVTDIEGVVYEGRKKLMDADKERFARKTKARTLAEVIEGADVFLGLSAGN 266 Query: 61 VLKKEMVATMAARPLILALANPTPEILPEVALSVRDDIVMATGRSDYPNQVNNVLCFPYI 120 VLK EMVATMAA PLILALANP PEILPE A +VRDDI+MATGRSDYPNQVNNVLCFPYI Sbjct: 267 VLKPEMVATMAANPLILALANPNPEILPEAAHAVRDDIIMATGRSDYPNQVNNVLCFPYI 326 Query: 121 FRGALDVGATTITREMEIAAVYAIAGLAEEEQNDVVAAAYGSYDLSFGPEYFIPKPFDPR 180 FRGALDVGATTITREME AAV AIA LA EEQN+VVAAAYG+YD+SFG +Y IPKPFDPR Sbjct: 327 FRGALDVGATTITREMEKAAVLAIANLAREEQNEVVAAAYGTYDISFGRDYLIPKPFDPR 386 Query: 181 LIVRIAPAVAKAAMEGGVATRPIADLDAYVEQLQQFVYHSGAFMKPLFAAAKQRVRDGDK 240 LIVRIAPAVAKAAMEGGVATRPIADLDAY EQLQQFVYHSGAFMKPLF+ AKQ VRDG + Sbjct: 387 LIVRIAPAVAKAAMEGGVATRPIADLDAYAEQLQQFVYHSGAFMKPLFSQAKQIVRDGGR 446 Query: 241 ARIVFTEGEDERVLRAVQVIVDEKLARPILVGRPEVLLARIQKFGLRLRLGQDVEVTSPD 300 ARIVFTEGEDERVLRAVQVIVDEK+A+PILVGRP+VLL+RI+KFGLRLRLGQDVEV +P+ Sbjct: 447 ARIVFTEGEDERVLRAVQVIVDEKVAKPILVGRPQVLLSRIEKFGLRLRLGQDVEVCNPE 506 Query: 301 YDERFHQYWTTYWDLMCREGITKEMARVEMRRRLTLIGAMMVRLGDADGMICGTVGAYHD 360 YDERFHQYWTTYWD+MCR GITKEMARVEMRRRLTLIGAMMV LGDADGMICG V +HD Sbjct: 507 YDERFHQYWTTYWDMMCRNGITKEMARVEMRRRLTLIGAMMVHLGDADGMICGAVSGFHD 566 Query: 361 HLRYVDQVIGKKPGANTYAAMNILLLDQRTVALVDTHVNDDPSAEQIAEFTIAAAEEMTW 420 HLR++DQVIG+KPGA TYAAMNILLLD+RTVALVDTHVN+DPSAEQIAE+T+AAAEEM Sbjct: 567 HLRFIDQVIGRKPGATTYAAMNILLLDERTVALVDTHVNEDPSAEQIAEYTVAAAEEMQR 626 Query: 421 LNLEPKAALLSRSNFGSASSASGGKMRRALDIITERAPTLEVDGEMHGDCALDEALRLQI 480 L L PK ALLSRSNFGS SSASG KMR AL+++ +AP LE+DGEMHGDCALDE+LRL++ Sbjct: 627 LGLAPKVALLSRSNFGSGSSASGAKMRHALELVNRQAPGLEIDGEMHGDCALDESLRLRL 686 Query: 481 LPSSRLKGSANLLVCPNVDAGNIAYNLLKTAAGSNVAVGPFLLGVNAPVHILTSSSTVRR 540 LP S LKGSANLLVCPNVD+GNIAYNLLKT AG NVAVGP LLG NAPVHI+TSS+TVRR Sbjct: 687 LPDSPLKGSANLLVCPNVDSGNIAYNLLKTVAGKNVAVGPILLGANAPVHIVTSSATVRR 746 Query: 541 IINMAALTVLDANRP 555 IINMAAL VLDANRP Sbjct: 747 IINMAALCVLDANRP 761