BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0174.p (201 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004716787.1| TRAP dicarboxylate transporter, DctP subunit... 273 1e-71 ref|YP_002498650.1| TRAP dicarboxylate transporter subunit DctP ... 255 3e-66 ref|YP_001768655.1| TRAP dicarboxylate transporter subunit DctP ... 253 1e-65 ref|YP_781793.1| TRAP dicarboxylate transporter subunit DctP [Rh... 239 2e-61 ref|YP_001527449.1| TRAP dicarboxylate transporter-DctP subunit ... 239 2e-61 >ref|YP_004716787.1| TRAP dicarboxylate transporter, DctP subunit protein [Sinorhizobium fredii GR64] gb|AEI89650.1| TRAP dicarboxylate transporter, DctP subunit protein [Sinorhizobium fredii GR64] Length = 328 Score = 273 bits (697), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 129/211 (61%), Positives = 157/211 (74%), Gaps = 11/211 (5%) Query: 1 MDGPLGKHIQAAFLKSNLIAFDKMWDNGFRQALSSAKPIRTPEDFKAFKIRVPPSPLWTS 60 +DG LG+ I+ AF NLIAF+KMWDNGFRQ S KPI++PED K FKIRVPP+PLWTS Sbjct: 117 VDGELGRSIRTAFETVNLIAFEKMWDNGFRQTTSIGKPIKSPEDLKGFKIRVPPAPLWTS 176 Query: 61 LFKSLGAAPVSIPWAETYSALQTRMADGIENALATIYFSKMYEISKHLSYTNHMWDGFWM 120 LFKSLGAAP SIPW ETYSALQT +ADG+EN LA IYF+KMYE+ K+LS TNHMWDGFW+ Sbjct: 177 LFKSLGAAPTSIPWGETYSALQTHVADGLENPLAGIYFAKMYEVQKYLSRTNHMWDGFWI 236 Query: 121 -----------XRARDIVVKVMNEAAVKQRTDVEKLNGELAGNLGTKGVQFTKVDRAPFQ 169 RDIVV +N +A+ QR DVEKLN EL L +KG++F VD + F+ Sbjct: 237 LANRDNFEMLPEDLRDIVVTEINRSAIVQRADVEKLNSELQAELTSKGLEFIDVDVSKFR 296 Query: 170 EKLRQAGFYGEWKRRMGDEAWSLLEATTGKL 200 L+ + FY +WK R G+EAW+LLE+T+GKL Sbjct: 297 ATLQASSFYSDWKGRFGEEAWALLESTSGKL 327 >ref|YP_002498650.1| TRAP dicarboxylate transporter subunit DctP [Methylobacterium nodulans ORS 2060] gb|ACL58347.1| TRAP dicarboxylate transporter, DctP subunit [Methylobacterium nodulans ORS 2060] Length = 335 Score = 255 bits (651), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 116/212 (54%), Positives = 156/212 (73%), Gaps = 11/212 (5%) Query: 1 MDGPLGKHIQAAFLKSNLIAFDKMWDNGFRQALSSAKPIRTPEDFKAFKIRVPPSPLWTS 60 +DGPLG+HI+ AF K+NL+ ++ +++GFRQ SS KPIRTP+D F+IRVPPSPLWTS Sbjct: 124 LDGPLGQHIRKAFEKANLVCMERSYNHGFRQTTSSTKPIRTPDDLNGFRIRVPPSPLWTS 183 Query: 61 LFKSLGAAPVSIPWAETYSALQTRMADGIENALATIYFSKMYEISKHLSYTNHMWDGFWM 120 +FKS GAAPVSIPWAETYSA+QTR+ADG+E L + KMYE+ K+ S TNHMWDGFW+ Sbjct: 184 MFKSFGAAPVSIPWAETYSAMQTRIADGLEQPLIGLLVDKMYEVQKYCSLTNHMWDGFWV 243 Query: 121 X-----------RARDIVVKVMNEAAVKQRTDVEKLNGELAGNLGTKGVQFTKVDRAPFQ 169 RDIV + +++ A+ QR DVE++N L L + G+QF +V+ A F+ Sbjct: 244 LANRRFWDRMPPNLRDIVQRNIDQEALVQRKDVEQMNATLQSKLQSLGLQFFEVNNADFR 303 Query: 170 EKLRQAGFYGEWKRRMGDEAWSLLEATTGKLA 201 ++L +GFY +W++R GDEAW+LLE+TTGKL Sbjct: 304 QRLVSSGFYQDWQKRYGDEAWALLESTTGKLG 335 >ref|YP_001768655.1| TRAP dicarboxylate transporter subunit DctP [Methylobacterium sp. 4-46] gb|ACA16221.1| TRAP dicarboxylate transporter, DctP subunit [Methylobacterium sp. 4-46] Length = 335 Score = 253 bits (646), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 118/212 (55%), Positives = 155/212 (73%), Gaps = 11/212 (5%) Query: 1 MDGPLGKHIQAAFLKSNLIAFDKMWDNGFRQALSSAKPIRTPEDFKAFKIRVPPSPLWTS 60 +DGPLG+HI+ AF K+NL+ +K +++GFRQ SS +PIRTP+DF FKIRVPPSPLWTS Sbjct: 124 LDGPLGQHIRGAFAKANLVCLEKSYNHGFRQTTSSTRPIRTPDDFNGFKIRVPPSPLWTS 183 Query: 61 LFKSLGAAPVSIPWAETYSALQTRMADGIENALATIYFSKMYEISKHLSYTNHMWDGFWM 120 +FK+ GAAPVSIPWAETYSA+QTR+ADG+E L + KMYE+ + S TNHMWDGFW+ Sbjct: 184 MFKAFGAAPVSIPWAETYSAMQTRIADGLEQPLIGLLVDKMYEVQRSCSLTNHMWDGFWV 243 Query: 121 ---XRA--------RDIVVKVMNEAAVKQRTDVEKLNGELAGNLGTKGVQFTKVDRAPFQ 169 RA R+++ + +N+ A+ QR +VE +N L L + G+QF V A F+ Sbjct: 244 LANRRAWERLPPDLREMLERAINQEALVQRREVEHMNATLQDRLQSLGLQFHTVANADFR 303 Query: 170 EKLRQAGFYGEWKRRMGDEAWSLLEATTGKLA 201 ++L +GFY EW++R GDEAWSLLEATTGKL Sbjct: 304 QRLVSSGFYQEWQKRYGDEAWSLLEATTGKLG 335 >ref|YP_781793.1| TRAP dicarboxylate transporter subunit DctP [Rhodopseudomonas palustris BisA53] gb|ABJ06813.1| TRAP dicarboxylate transporter, DctP subunit [Rhodopseudomonas palustris BisA53] Length = 339 Score = 239 bits (610), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 117/212 (55%), Positives = 145/212 (68%), Gaps = 11/212 (5%) Query: 1 MDGPLGKHIQAAFLKSNLIAFDKMWDNGFRQALSSAKPIRTPEDFKAFKIRVPPSPLWTS 60 MDG LG H++ K+NL+ DK+WDNGFRQ SS+KPI P+DFK FKIRVP SPLWTS Sbjct: 128 MDGELGAHVRGEIGKANLVVMDKIWDNGFRQTTSSSKPITGPDDFKGFKIRVPVSPLWTS 187 Query: 61 LFKSLGAAPVSIPWAETYSALQTRMADGIENALATIYFSKMYEISKHLSYTNHMWDGFWM 120 +FK+ A+P SI ++E YSALQT++ +G EN LA I +K+YE+ K+ S TNHMWDGFW Sbjct: 188 MFKAFDASPASINFSEVYSALQTKVVEGQENPLAIISTAKLYEVQKYCSLTNHMWDGFWF 247 Query: 121 ---XRA--------RDIVVKVMNEAAVKQRTDVEKLNGELAGNLGTKGVQFTKVDRAPFQ 169 RA R IV K +N A + QR DV KLN L +L KG+ F + PF+ Sbjct: 248 LANKRAWERLPEDLRAIVAKNINAAGINQRADVAKLNAGLKDDLAAKGLAFNQPAITPFR 307 Query: 170 EKLRQAGFYGEWKRRMGDEAWSLLEATTGKLA 201 EKLR+AGFY EWK + GD+AWSLLE TG LA Sbjct: 308 EKLRKAGFYAEWKGKYGDQAWSLLEKATGSLA 339 >ref|YP_001527449.1| TRAP dicarboxylate transporter-DctP subunit [Azorhizobium caulinodans ORS 571] dbj|BAF90531.1| TRAP dicarboxylate transporter-DctP subunit [Azorhizobium caulinodans ORS 571] Length = 339 Score = 239 bits (609), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 116/212 (54%), Positives = 144/212 (67%), Gaps = 11/212 (5%) Query: 1 MDGPLGKHIQAAFLKSNLIAFDKMWDNGFRQALSSAKPIRTPEDFKAFKIRVPPSPLWTS 60 MDGPLG++++ K L+A DK+WDNGFRQ SS KPI T +D + FKIRVP SPLWTS Sbjct: 128 MDGPLGEYVRGQIGKFGLVAMDKIWDNGFRQTTSSTKPIETAKDLEGFKIRVPVSPLWTS 187 Query: 61 LFKSLGAAPVSIPWAETYSALQTRMADGIENALATIYFSKMYEISKHLSYTNHMWDGFWM 120 ++K+ G+AP SI +AE YSALQT++ DG EN LA I +K+YE+ K+ S TNHMWDGFW Sbjct: 188 MYKAFGSAPASINFAEVYSALQTKIVDGQENPLAIISTAKLYEVQKYCSLTNHMWDGFWF 247 Query: 121 X-----------RARDIVVKVMNEAAVKQRTDVEKLNGELAGNLGTKGVQFTKVDRAPFQ 169 R IV K +N AA K+R DV KLN L +L KG+ F K D APF+ Sbjct: 248 LANRRAWQALPDNIRTIVAKHINAAAEKERADVAKLNAGLQDDLAAKGLAFNKPDPAPFR 307 Query: 170 EKLRQAGFYGEWKRRMGDEAWSLLEATTGKLA 201 EKLR AGFY EWK + G+EAW +LE GKL+ Sbjct: 308 EKLRAAGFYTEWKNKYGEEAWGILEGAVGKLS 339