BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0171.p (308 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001861072.1| LysR family transcriptional regulator [Burkh... 439 e-121 ref|YP_293158.1| LysR family transcriptional regulator [Ralstoni... 430 e-118 ref|YP_004753423.1| LysR family transcriptional regulator [Colli... 301 1e-79 ref|YP_003776465.1| LysR family transcription regulator protein ... 300 3e-79 ref|YP_004125505.1| lysr substrate-binding protein [Alicycliphil... 290 3e-76 >ref|YP_001861072.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gb|ACC74026.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 307 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 199/303 (65%), Positives = 249/303 (82%), Gaps = 1/303 (0%) Query: 1 VSNFDWDDFRVFLAAARTQSGLEASHLLKMSQSTVSRRLGKLEKDVGSKLFDRSAQGLRL 60 ++ FDWD+ R+FL AAR+QS LEA+H LKMSQST+SRR+ +LE+D GSKLF+RS+QGLRL Sbjct: 1 MNQFDWDNLRIFLGAARSQSALEAAHALKMSQSTISRRIQRLERDTGSKLFERSSQGLRL 60 Query: 61 TTAGHHLFEHAEKLESTLSAIESQVSQGDRMELSGEIRIGATEAFGTFFLMPHLSHFCQR 120 T AGH L EH E+LE+TL A+E+ V D + L+GEIR+GATE FGTFFL P ++HFC R Sbjct: 61 TAAGHRLLEHVERLETTLQAVETSVFS-DSVTLTGEIRLGATEGFGTFFLAPQVTHFCAR 119 Query: 121 HQAVSMDVLPLPRSLNISKREVDTSVALDRPRTNSFVTRKLGEYRLLPYATPEYLERHPP 180 H +++DVLPLPR++N+SKRE D SVA+DRP NSFVT KL EYRLLPYATP+YL HPP Sbjct: 120 HPGITVDVLPLPRNVNLSKREADASVAIDRPSANSFVTCKLTEYRLLPYATPQYLSEHPP 179 Query: 181 IRRVEDFQDHRWIDFVDDLLFSPQQFHLHKWSSSLQRCLRSTSVVAQAQAVKAGLGIAII 240 I+ ED HRWID+VDDL+FS QQF L +W SL+ RSTSV+AQA+AV+AG GI ++ Sbjct: 180 IKTTEDLIGHRWIDYVDDLIFSNQQFSLPRWLPSLKPVFRSTSVIAQAEAVRAGFGIGVL 239 Query: 241 PCFLGSVTDNLVPILPDKVDITRSLWLVAPPERRELARIRALWDYVRDIAELNADYLDGK 300 PCFLGS+ +LVP+LPD++DITR+ WLVAPPERRELAR++ALWDY+RD+AE N D+L G Sbjct: 240 PCFLGSLGGDLVPVLPDQIDITRTFWLVAPPERRELARVKALWDYIRDVAEANHDFLMGN 299 Query: 301 TTE 303 TTE Sbjct: 300 TTE 302 >ref|YP_293158.1| LysR family transcriptional regulator [Ralstonia eutropha JMP134] gb|AAZ65301.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134] Length = 307 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 208/308 (67%), Positives = 259/308 (84%), Gaps = 1/308 (0%) Query: 1 VSNFDWDDFRVFLAAARTQSGLEASHLLKMSQSTVSRRLGKLEKDVGSKLFDRSAQGLRL 60 +++FDWD+ RVFLAAAR+QS LEASH LKMSQST+SRR+ +LE+D GSKLF+RS+QGL L Sbjct: 1 MNHFDWDNLRVFLAAARSQSTLEASHTLKMSQSTISRRIQRLERDTGSKLFERSSQGLSL 60 Query: 61 TTAGHHLFEHAEKLESTLSAIESQVSQGDRMELSGEIRIGATEAFGTFFLMPHLSHFCQR 120 T+AGH L EH EKLESTLSA+E+ V D + L+GEIR+G+TEAFGTFFL PH + FC R Sbjct: 61 TSAGHRLLEHVEKLESTLSAVETAVF-SDTLALTGEIRLGSTEAFGTFFLAPHSAQFCSR 119 Query: 121 HQAVSMDVLPLPRSLNISKREVDTSVALDRPRTNSFVTRKLGEYRLLPYATPEYLERHPP 180 H A+++DVLP+PRSLN+SKRE D SVA+DRP NSFVT KL +YRL+PYAT EYL++HPP Sbjct: 120 HPAITVDVLPMPRSLNLSKREADASVAIDRPSANSFVTCKLSDYRLVPYATAEYLDKHPP 179 Query: 181 IRRVEDFQDHRWIDFVDDLLFSPQQFHLHKWSSSLQRCLRSTSVVAQAQAVKAGLGIAII 240 IR+++D HRWID+VDDL+FSPQQF L KW S + LRSTS VAQAQAVKAGLGIA++ Sbjct: 180 IRKLDDLAGHRWIDYVDDLVFSPQQFMLQKWIPSCRPFLRSTSAVAQAQAVKAGLGIAVL 239 Query: 241 PCFLGSVTDNLVPILPDKVDITRSLWLVAPPERRELARIRALWDYVRDIAELNADYLDGK 300 PCFLGS+ D LVP++ D++ ITR+ WLVAPPERRE+AR++ALWDY+RD+AE+N D+L G Sbjct: 240 PCFLGSLIDGLVPVMLDEIHITRTFWLVAPPERREVARVKALWDYLRDVAEVNKDFLMGH 299 Query: 301 TTEMSWLK 308 T M W+K Sbjct: 300 TRTMIWVK 307 >ref|YP_004753423.1| LysR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK62600.1| Transcriptional regulator, LysR family [Collimonas fungivorans Ter331] Length = 323 Score = 301 bits (770), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 141/303 (46%), Positives = 208/303 (68%), Gaps = 1/303 (0%) Query: 4 FDWDDFRVFLAAARTQSGLEASHLLKMSQSTVSRRLGKLEKDVGSKLFDRSAQGLRLTTA 63 DWD+ RVFL R+Q +E + L + STVSRR+ + E+ VGS+LF+R+ QG LT Sbjct: 15 LDWDNLRVFLELTRSQGLVETAKKLGIDHSTVSRRMHRFEEQVGSQLFERNNQGYTLTAE 74 Query: 64 GHHLFEHAEKLESTLSAIESQVSQGDRMELSGEIRIGATEAFGTFFLMPHLSHFCQRHQA 123 GH L E+AE++EST+ A ++S +R+ LSG++R+GATE FGTF L PHL+HFC RH Sbjct: 75 GHRLIEYAERVESTVYAAAEELSGHNRL-LSGQVRLGATEGFGTFVLAPHLAHFCARHPH 133 Query: 124 VSMDVLPLPRSLNISKREVDTSVALDRPRTNSFVTRKLGEYRLLPYATPEYLERHPPIRR 183 +++D+LP+PR +N+SKRE D V ++RP++ ++V KL +Y L YAT YLE H PI+ Sbjct: 134 ITVDLLPVPRFVNLSKREADIGVTIERPQSGNYVVTKLTDYLLKLYATRSYLETHAPIKT 193 Query: 184 VEDFQDHRWIDFVDDLLFSPQQFHLHKWSSSLQRCLRSTSVVAQAQAVKAGLGIAIIPCF 243 ++D H +I +VDDL+FS + + + + R RSTSV+AQ A ++G G+AI+PCF Sbjct: 194 LQDLNHHAFIGYVDDLVFSEELRYKDNVAPAAFRAFRSTSVIAQYTAARSGQGLAILPCF 253 Query: 244 LGSVTDNLVPILPDKVDITRSLWLVAPPERRELARIRALWDYVRDIAELNADYLDGKTTE 303 L +D+LVP+L + DI R+ WLVA E R +AR+ ALW Y+R++ E N +L G++ Sbjct: 254 LAQQSDDLVPVLDGQADIQRAFWLVAATETRNVARVAALWRYLREVIEPNRPFLMGESRH 313 Query: 304 MSW 306 M++ Sbjct: 314 MTY 316 >ref|YP_003776465.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64557.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 305 Score = 300 bits (767), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 140/305 (45%), Positives = 208/305 (68%), Gaps = 1/305 (0%) Query: 4 FDWDDFRVFLAAARTQSGLEASHLLKMSQSTVSRRLGKLEKDVGSKLFDRSAQGLRLTTA 63 DWD+ R+FL R+Q ++A+ L + STVSRR+ + E+ VGS+LFDR+ G +LT Sbjct: 2 LDWDNLRIFLELTRSQGLVDAAKKLGIDHSTVSRRMKRFEEQVGSQLFDRNNHGYKLTAD 61 Query: 64 GHHLFEHAEKLESTLSAIESQVSQGDRMELSGEIRIGATEAFGTFFLMPHLSHFCQRHQA 123 G+ L E+AE++ESTL A ++ G +LSG++R+GATE FGTF L PH++HFC R+ Sbjct: 62 GYRLVEYAEQVESTLYAATEELG-GHNSKLSGQVRLGATEGFGTFVLAPHIAHFCARNPH 120 Query: 124 VSMDVLPLPRSLNISKREVDTSVALDRPRTNSFVTRKLGEYRLLPYATPEYLERHPPIRR 183 +++D+LP+PR +N+SK E D SV+++RP + ++V KL +Y L YA+ +YL +HPPI Sbjct: 121 ITVDMLPMPRFVNLSKHEADISVSIERPLSGNYVVTKLSDYVLKLYASRDYLAQHPPIHT 180 Query: 184 VEDFQDHRWIDFVDDLLFSPQQFHLHKWSSSLQRCLRSTSVVAQAQAVKAGLGIAIIPCF 243 ++D H +I ++DDL+FS + + + R RSTSVVAQ A AG +AI+PCF Sbjct: 181 MDDLAQHHFIGYIDDLVFSEELRYKDTVAPDAFRAFRSTSVVAQYTAACAGRALAILPCF 240 Query: 244 LGSVTDNLVPILPDKVDITRSLWLVAPPERRELARIRALWDYVRDIAELNADYLDGKTTE 303 L ++ L P+LP ++ ITRS WLVA E+R +AR+ ALW Y+R+ ELN D+L G++ Sbjct: 241 LAQQSEELAPVLPQQIAITRSFWLVASSEQRHVARVSALWSYLRECVELNRDFLMGQSRR 300 Query: 304 MSWLK 308 M WL+ Sbjct: 301 MRWLE 305 >ref|YP_004125505.1| lysr substrate-binding protein [Alicycliphilus denitrificans BC] gb|ADU98617.1| LysR substrate-binding protein [Alicycliphilus denitrificans BC] Length = 308 Score = 290 bits (741), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 135/299 (45%), Positives = 203/299 (67%), Gaps = 1/299 (0%) Query: 1 VSNFDWDDFRVFLAAARTQSGLEASHLLKMSQSTVSRRLGKLEKDVGSKLFDRSAQGLRL 60 + +WD+ R+FLA R QS EA+ +++ ST++RRL +LEK++G++LF+R+ G L Sbjct: 3 IDRINWDNLRLFLAVVRAQSAQEAARRMEVDHSTITRRLHRLEKELGAQLFERTPAGHLL 62 Query: 61 TTAGHHLFEHAEKLESTLSAIESQVSQGDRMELSGEIRIGATEAFGTFFLMPHLSHFCQR 120 T AG L EH E++ES++ + + GD L+G +R+GATE FG+FFL PHLS+FC R Sbjct: 63 TPAGQRLLEHVERMESSMVLVGEDIG-GDSHMLTGHVRLGATEGFGSFFLAPHLSYFCDR 121 Query: 121 HQAVSMDVLPLPRSLNISKREVDTSVALDRPRTNSFVTRKLGEYRLLPYATPEYLERHPP 180 H + +++L +PR +N+S+RE D +V ++RP+ + V KL +YRL YA+ YL+ PP Sbjct: 122 HPGIQVELLIVPRFINLSQREADLAVNIERPQRSGQVCSKLTDYRLRLYASRSYLQGQPP 181 Query: 181 IRRVEDFQDHRWIDFVDDLLFSPQQFHLHKWSSSLQRCLRSTSVVAQAQAVKAGLGIAII 240 IRR+ D HR+ +V++L+FS + +L LRSTSVVAQ AV+ G G+A++ Sbjct: 182 IRRLRDLAAHRFFGYVEELVFSQELRYLTSIMPDAPMSLRSTSVVAQYNAVREGRGLAVL 241 Query: 241 PCFLGSVTDNLVPILPDKVDITRSLWLVAPPERRELARIRALWDYVRDIAELNADYLDG 299 PCF+ + L P+LP +VD+ R+ WL AP +RRELAR+RALWDY+R++ E N +L G Sbjct: 242 PCFMAAQCAELEPVLPHEVDVLRTFWLAAPADRRELARVRALWDYLRELVECNQPFLLG 300