BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0170.p         (127 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_03525823.1| hypothetical protein RetlC8_03282 [Rhizobium ...   176   1e-42
ref|YP_004331727.1| hypothetical protein Psed_1638 [Pseudonocard...   125   2e-27
ref|YP_002981197.1| hypothetical protein Rpic12D_1236 [Ralstonia...   121   4e-26
ref|YP_003645906.1| hypothetical protein Tpau_0934 [Tsukamurella...   120   8e-26
ref|YP_001898751.1| hypothetical protein Rpic_1175 [Ralstonia pi...   120   9e-26

>ref|ZP_03525823.1| hypothetical protein RetlC8_03282 [Rhizobium etli CIAT 894]
          Length = 123

 Score =  176 bits (445), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 83/123 (67%), Positives = 100/123 (81%)

Query: 1   MSIPEIDAVLAELRVREPIFHRREFGTSRDDLLGMTTDDFWEIGASGNIYDRNFVIETLL 60
           M   ++DA+L+EL  REPIFH+REFGTSR+DLL MT +DFWEIGASG IY R+FVIE LL
Sbjct: 1   MHKLDLDAILSELAAREPIFHQREFGTSREDLLKMTANDFWEIGASGKIYGRDFVIERLL 60

Query: 61  ERYKSAEADDLVCSEFKLRRLAEDLYQLNYVLQQPDRLTRRTTLWQKTGGKWKIVFHQGT 120
           ERYKS E DD  C++F +R LAE+L+QLNYVLQQP R TRRTTLW++  G W+IVFHQGT
Sbjct: 61  ERYKSPEPDDWSCTDFLIRPLAENLFQLNYVLQQPGRQTRRTTLWRRQDGVWQIVFHQGT 120

Query: 121 PIT 123
            + 
Sbjct: 121 VVA 123


>ref|YP_004331727.1| hypothetical protein Psed_1638 [Pseudonocardia dioxanivorans
           CB1190]
 gb|AEA23874.1| hypothetical protein Psed_1638 [Pseudonocardia dioxanivorans
           CB1190]
          Length = 128

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/119 (49%), Positives = 74/119 (62%)

Query: 5   EIDAVLAELRVREPIFHRREFGTSRDDLLGMTTDDFWEIGASGNIYDRNFVIETLLERYK 64
           E D V +EL  REP+FHR E+GT R DL  MT  D+WE+GASG  YDR FVI  LLERY 
Sbjct: 9   ENDVVRSELFAREPLFHRPEWGTGRADLEAMTAPDYWEVGASGRTYDREFVIGVLLERYA 68

Query: 65  SAEADDLVCSEFKLRRLAEDLYQLNYVLQQPDRLTRRTTLWQKTGGKWKIVFHQGTPIT 123
             E D      F  R L    Y + Y L Q +R+TRR T+W++T G W+ ++HQGT + 
Sbjct: 69  RDEPDPWSADGFACRALGPGTYLVTYTLTQGERVTRRATVWERTSGGWRALYHQGTVVA 127


>ref|YP_002981197.1| hypothetical protein Rpic12D_1236 [Ralstonia pickettii 12D]
 ref|ZP_07676966.1| conserved hypothetical protein [Ralstonia sp. 5_7_47FAA]
 gb|ACS62525.1| conserved hypothetical protein [Ralstonia pickettii 12D]
 gb|EFP64676.1| conserved hypothetical protein [Ralstonia sp. 5_7_47FAA]
          Length = 131

 Score =  121 bits (303), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 61/124 (49%), Positives = 79/124 (63%)

Query: 2   SIPEIDAVLAELRVREPIFHRREFGTSRDDLLGMTTDDFWEIGASGNIYDRNFVIETLLE 61
           + P + +VL ELR REPIFHR EFGT R+D   MTT+DFWE GASG  Y R++V+  L  
Sbjct: 7   TAPGLLSVLEELRRREPIFHRPEFGTRREDFERMTTEDFWETGASGQRYSRSYVLGVLDA 66

Query: 62  RYKSAEADDLVCSEFKLRRLAEDLYQLNYVLQQPDRLTRRTTLWQKTGGKWKIVFHQGTP 121
           R+     D     +F+ + +A D Y L Y L Q +R TRR TLW++T   WKIV+HQGT 
Sbjct: 67  RHGHIGEDFWQTRDFRCQEIAPDNYLLTYTLVQSNRTTRRATLWRRTPDGWKIVYHQGTI 126

Query: 122 ITEN 125
           + E 
Sbjct: 127 VAEG 130


>ref|YP_003645906.1| hypothetical protein Tpau_0934 [Tsukamurella paurometabola DSM
           20162]
 gb|ADG77567.1| conserved hypothetical protein [Tsukamurella paurometabola DSM
           20162]
          Length = 140

 Score =  120 bits (300), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 54/119 (45%), Positives = 75/119 (63%)

Query: 5   EIDAVLAELRVREPIFHRREFGTSRDDLLGMTTDDFWEIGASGNIYDRNFVIETLLERYK 64
           E+  VL +LR REPIFHRRE+G + +D L +T  DFWE+GASG  Y R++V   L  RY 
Sbjct: 20  ELREVLEDLRRREPIFHRREWGVTHEDFLALTAPDFWEVGASGRRYSRDYVWSALERRYA 79

Query: 65  SAEADDLVCSEFKLRRLAEDLYQLNYVLQQPDRLTRRTTLWQKTGGKWKIVFHQGTPIT 123
               D    S+F++R      Y L Y L Q DR+TRR ++W++   +W ++FHQGTP+ 
Sbjct: 80  QDADDPWETSDFQVRATGSSTYLLTYTLTQGDRVTRRLSVWKRRENRWSVLFHQGTPVA 138


>ref|YP_001898751.1| hypothetical protein Rpic_1175 [Ralstonia pickettii 12J]
 gb|ACD26319.1| conserved hypothetical protein [Ralstonia pickettii 12J]
          Length = 131

 Score =  120 bits (300), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 59/124 (47%), Positives = 80/124 (64%)

Query: 2   SIPEIDAVLAELRVREPIFHRREFGTSRDDLLGMTTDDFWEIGASGNIYDRNFVIETLLE 61
           + P + +VL ELR REPIFHR EFGT R+D   MTT+DFWE GASG  Y R++V+  L  
Sbjct: 7   TAPGLLSVLEELRRREPIFHRPEFGTRREDFERMTTEDFWETGASGQRYSRSYVLGVLDA 66

Query: 62  RYKSAEADDLVCSEFKLRRLAEDLYQLNYVLQQPDRLTRRTTLWQKTGGKWKIVFHQGTP 121
           R+     D     +F+ + +A D Y L Y L Q +R TRR TLW++T   WK+++HQGT 
Sbjct: 67  RHGHIGEDFWQTRDFRCQEIAPDNYLLTYTLVQSNRTTRRATLWRRTLDGWKVIYHQGTI 126

Query: 122 ITEN 125
           + E+
Sbjct: 127 VAES 130