BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0161.p (195 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774533.1| TRAP-type C4-dicarboxylate transport system ... 368 e-100 ref|YP_003773939.1| TRAP-type C4-dicarboxylate transport system ... 355 3e-96 ref|YP_001206706.1| putative TRAP-type C4-dicarboxylate transpor... 287 6e-76 ref|YP_001239281.1| putative TRAP-type C4-dicarboxylate transpor... 283 1e-74 ref|NP_768810.1| ABC transporter substrate-binding protein [Brad... 271 4e-71 >ref|YP_003774533.1| TRAP-type C4-dicarboxylate transport system periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ62625.1| TRAP-type C4-dicarboxylate transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 348 Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust. Identities = 176/195 (90%), Positives = 186/195 (95%) Query: 1 LLTMSRPWDNGFRQITTSTKAVKTAGDLKGLKLRVPAAPMLTSLFTALGASPTPINFNEV 60 LLTMS+PWDNGFRQITTSTK +KTA DLKGLKLRVPAAPMLTSLF+ALGASPTPINFNEV Sbjct: 154 LLTMSKPWDNGFRQITTSTKPIKTAADLKGLKLRVPAAPMLTSLFSALGASPTPINFNEV 213 Query: 61 YSSLQTKLVEGQENPLAIISTARLYEVQKFCAMSNHVWDAYWILGNRRAIERLPKDIQEI 120 YSSLQTKLVEGQENPLAIISTARLYEVQKFC +SNHVWDAYWILGNRRA E+LPKDIQEI Sbjct: 214 YSSLQTKLVEGQENPLAIISTARLYEVQKFCTISNHVWDAYWILGNRRAFEKLPKDIQEI 273 Query: 121 VRRELDKAATDERADIASLSISARNDLAAKGVQIIEPDKNSFKDALAKGTFYKDLRSKFG 180 VRRELDKAATDERADIASLS ARNDL KGVQIIE DKNSFK+ALA+G+FYKDLR+KFG Sbjct: 274 VRRELDKAATDERADIASLSGFARNDLQGKGVQIIEADKNSFKEALARGSFYKDLRAKFG 333 Query: 181 EDAWKLLQNSVGSLG 195 +DAWKLLQNSVGSLG Sbjct: 334 DDAWKLLQNSVGSLG 348 >ref|YP_003773939.1| TRAP-type C4-dicarboxylate transport system periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ62031.1| TRAP-type C4-dicarboxylate transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 345 Score = 355 bits (910), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 166/195 (85%), Positives = 184/195 (94%) Query: 1 LLTMSRPWDNGFRQITTSTKAVKTAGDLKGLKLRVPAAPMLTSLFTALGASPTPINFNEV 60 LLTMS+PWDNGFRQITTSTK V+ AGD+KGLKLRVPAAPMLTSLF+ALGASPTPINFNEV Sbjct: 151 LLTMSKPWDNGFRQITTSTKPVRNAGDVKGLKLRVPAAPMLTSLFSALGASPTPINFNEV 210 Query: 61 YSSLQTKLVEGQENPLAIISTARLYEVQKFCAMSNHVWDAYWILGNRRAIERLPKDIQEI 120 YSSLQTKLVEGQENPLAIISTARLYEVQKFC +SNHVWDAYWILGNRRA E+LPKDIQEI Sbjct: 211 YSSLQTKLVEGQENPLAIISTARLYEVQKFCTISNHVWDAYWILGNRRAFEKLPKDIQEI 270 Query: 121 VRRELDKAATDERADIASLSISARNDLAAKGVQIIEPDKNSFKDALAKGTFYKDLRSKFG 180 VRRELDKAA+DERADIA+ S ARNDLA+KG+QI+E DK+SFK+ALA+ FYKD+R+KFG Sbjct: 271 VRRELDKAASDERADIAAFSGFARNDLASKGLQIVEADKDSFKEALARANFYKDMRAKFG 330 Query: 181 EDAWKLLQNSVGSLG 195 EDAWKLL+ SVG+LG Sbjct: 331 EDAWKLLEGSVGALG 345 >ref|YP_001206706.1| putative TRAP-type C4-dicarboxylate transport system binding periplasmic protein DctP [Bradyrhizobium sp. ORS 278] emb|CAL78489.1| putative TRAP-type C4-dicarboxylate transport system, periplasmic component (dctP-like) [Bradyrhizobium sp. ORS 278] Length = 340 Score = 287 bits (734), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 130/194 (67%), Positives = 163/194 (84%) Query: 2 LTMSRPWDNGFRQITTSTKAVKTAGDLKGLKLRVPAAPMLTSLFTALGASPTPINFNEVY 61 + +S+PWDNGFRQ+T+ST+ +KT DLK K+RVPAAP+LTSLF ALGA PTPINFNEVY Sbjct: 147 IALSKPWDNGFRQVTSSTREIKTPDDLKSFKIRVPAAPILTSLFQALGAGPTPINFNEVY 206 Query: 62 SSLQTKLVEGQENPLAIISTARLYEVQKFCAMSNHVWDAYWILGNRRAIERLPKDIQEIV 121 +SLQTK+VEGQENPL II+TA+LYEVQK+C++++HVWDAYWILGNR A+ +LP D+Q +V Sbjct: 207 TSLQTKVVEGQENPLPIIATAKLYEVQKYCSLTSHVWDAYWILGNRAALGKLPSDLQVLV 266 Query: 122 RRELDKAATDERADIASLSISARNDLAAKGVQIIEPDKNSFKDALAKGTFYKDLRSKFGE 181 +E K+A DERADIA+LS S R DLAAKG ++ DK +F+ AL K +FYKD R KFGE Sbjct: 267 TQEFGKSADDERADIAALSQSLRADLAAKGFTFVDVDKEAFRTALGKTSFYKDWRGKFGE 326 Query: 182 DAWKLLQNSVGSLG 195 DAWK+LQ++VG LG Sbjct: 327 DAWKILQSNVGELG 340 >ref|YP_001239281.1| putative TRAP-type C4-dicarboxylate transport system periplasmic protein [Bradyrhizobium sp. BTAi1] gb|ABQ35375.1| putative TRAP-type C4-dicarboxylate transport system, periplasmic component [Bradyrhizobium sp. BTAi1] Length = 337 Score = 283 bits (724), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 128/194 (65%), Positives = 160/194 (82%) Query: 2 LTMSRPWDNGFRQITTSTKAVKTAGDLKGLKLRVPAAPMLTSLFTALGASPTPINFNEVY 61 + +S+PWDNGFRQ+T+ST+ ++T DLK K+RVPAAP+LTSLF ALGA PTPINFNEVY Sbjct: 144 IALSKPWDNGFRQVTSSTREIRTPDDLKSFKIRVPAAPILTSLFQALGAGPTPINFNEVY 203 Query: 62 SSLQTKLVEGQENPLAIISTARLYEVQKFCAMSNHVWDAYWILGNRRAIERLPKDIQEIV 121 +SLQTK+VEGQENPL II+TA+LYEVQK+C++++HVWDAYWIL NR A RLP D+Q IV Sbjct: 204 TSLQTKVVEGQENPLPIIATAKLYEVQKYCSLTSHVWDAYWILCNRAAFTRLPADLQAIV 263 Query: 122 RRELDKAATDERADIASLSISARNDLAAKGVQIIEPDKNSFKDALAKGTFYKDLRSKFGE 181 RE + +A DERADIA+LS S R DLAAKG ++ DK +F+ AL K +FYKD R KFGE Sbjct: 264 TREFNASADDERADIAALSQSLRADLAAKGFTFVDVDKTAFRAALGKSSFYKDWRGKFGE 323 Query: 182 DAWKLLQNSVGSLG 195 +AW +LQ++VG LG Sbjct: 324 EAWTILQSNVGELG 337 >ref|NP_768810.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC47435.1| blr2170 [Bradyrhizobium japonicum USDA 110] Length = 355 Score = 271 bits (693), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 121/194 (62%), Positives = 157/194 (80%) Query: 1 LLTMSRPWDNGFRQITTSTKAVKTAGDLKGLKLRVPAAPMLTSLFTALGASPTPINFNEV 60 ++ +S+ WDNGFRQ+T+S + V+T DLK ++RVP AP+LTSLF ALGA PTPINFNEV Sbjct: 161 IMAVSKAWDNGFRQVTSSGREVRTPDDLKNFQIRVPPAPLLTSLFKALGAGPTPINFNEV 220 Query: 61 YSSLQTKLVEGQENPLAIISTARLYEVQKFCAMSNHVWDAYWILGNRRAIERLPKDIQEI 120 YS+LQTK+V+GQENPL II+TARLYEVQ C+++ HVWD YWILGN+RA ERLPKD+QEI Sbjct: 221 YSALQTKVVDGQENPLPIIATARLYEVQSTCSLTGHVWDGYWILGNKRAFERLPKDVQEI 280 Query: 121 VRRELDKAATDERADIASLSISARNDLAAKGVQIIEPDKNSFKDALAKGTFYKDLRSKFG 180 V RELD++A D+RADIA LS S R DL+ KG++ I+ D+ +F+ AL+K +FY D + KFG Sbjct: 281 VTRELDRSAVDQRADIAKLSQSLRADLSTKGLKFIDVDRAAFRQALSKTSFYADWKGKFG 340 Query: 181 EDAWKLLQNSVGSL 194 E+AW L+ + G L Sbjct: 341 EEAWSHLEKAAGQL 354