BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0157.p (294 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774535.1| LysR family transcription regulator protein ... 495 e-138 ref|YP_001793285.1| LysR family transcriptional regulator [Lepto... 462 e-128 ref|YP_002945191.1| LysR family transcriptional regulator [Vario... 444 e-123 ref|YP_001561764.1| LysR family transcriptional regulator [Delft... 396 e-108 ref|YP_004491128.1| LysR family transcriptional regulator [Delft... 392 e-107 >ref|YP_003774535.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62627.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 295 Score = 495 bits (1275), Expect = e-138, Method: Compositional matrix adjust. Identities = 240/291 (82%), Positives = 264/291 (90%) Query: 1 MAALPPIPNLQAFEAVARRRSFALAAGELHLTASAVSHQVARLESYLGVRLFERSAHGVH 60 MA LPP+PNLQAFEAVARR+SFALAA ELHLTASAVSHQVARLESYLG+RLFERSAHGV Sbjct: 1 MAVLPPLPNLQAFEAVARRKSFALAAAELHLTASAVSHQVARLESYLGIRLFERSAHGVR 60 Query: 61 ISAAGESYLARIQGAISAITAASMDVKHGVSNSLYIHSAPSIASLWLMERLNGFARAYPD 120 I+ AGE+YLARIQGAISAITAASMDV+ GVSN+LYIHSAPSIASLWLM RLN FAR+YP+ Sbjct: 61 ITTAGEAYLARIQGAISAITAASMDVRQGVSNTLYIHSAPSIASLWLMARLNDFARSYPE 120 Query: 121 ISFNLSAAHTPSNFELGEVDIDIRYGIPNWPGLQVEPLFEERIVPLASPEFIRQNKLKKP 180 I+FNLSAAH+ SNFELGEVDIDIRYGIPNWPGL VEPLFEERIVPLASP FIR+ +L+KP Sbjct: 121 ITFNLSAAHSQSNFELGEVDIDIRYGIPNWPGLVVEPLFEERIVPLASPAFIREYRLRKP 180 Query: 181 EDLLRVRLIRSNVSVVQWPDWFAIYSPLRTPNQFAVRFDRAQMSLDAATQGLGVALESTT 240 DLL V+LIRSNVSVVQW DWF ++ +R P QFAVRFDRAQMSLDAATQGLGVALES T Sbjct: 181 ADLLGVKLIRSNVSVVQWADWFGEFADVRAPEQFAVRFDRAQMSLDAATQGLGVALESAT 240 Query: 241 VAGRHIRERQLKPVFGLEQCIKVKAHFAVYPARHIKRPAVEAFLGWLREQA 291 VA RH+ E++LKP+FGLE+ IKVKAHFAVYPA H +RPAV AFL WLREQA Sbjct: 241 VAARHLEEKKLKPIFGLERAIKVKAHFAVYPAHHARRPAVAAFLEWLREQA 291 >ref|YP_001793285.1| LysR family transcriptional regulator [Leptothrix cholodnii SP-6] gb|ACB36520.1| transcriptional regulator, LysR family [Leptothrix cholodnii SP-6] Length = 297 Score = 462 bits (1188), Expect = e-128, Method: Compositional matrix adjust. Identities = 224/292 (76%), Positives = 257/292 (88%) Query: 1 MAALPPIPNLQAFEAVARRRSFALAAGELHLTASAVSHQVARLESYLGVRLFERSAHGVH 60 M+ +PPI NLQAFEAVARRRSFALAA ELHLTASA+SHQV RLE++LGVRLFERSAHGV Sbjct: 1 MSYIPPITNLQAFEAVARRRSFALAAAELHLTASAISHQVTRLEAHLGVRLFERSAHGVR 60 Query: 61 ISAAGESYLARIQGAISAITAASMDVKHGVSNSLYIHSAPSIASLWLMERLNGFARAYPD 120 IS AGESYL+RI A+SAI AA+ D++ GV NSLY+HSAPSIASLWLM RL GFA+AYPD Sbjct: 61 ISPAGESYLSRIGRALSAIAAATEDLRQGVRNSLYVHSAPSIASLWLMARLQGFAQAYPD 120 Query: 121 ISFNLSAAHTPSNFELGEVDIDIRYGIPNWPGLQVEPLFEERIVPLASPEFIRQNKLKKP 180 IS NLS+AHTPS+FELG+ DIDIRYG+PNWP L VEPLFEE IVPLASPEFIR+++LK+P Sbjct: 121 ISLNLSSAHTPSDFELGQSDIDIRYGVPNWPDLVVEPLFEESIVPLASPEFIREHRLKRP 180 Query: 181 EDLLRVRLIRSNVSVVQWPDWFAIYSPLRTPNQFAVRFDRAQMSLDAATQGLGVALESTT 240 E LL V+LI+SNVSVVQW DWF+ ++ P +F+VRFDRAQMSLDAATQGLGVALESTT Sbjct: 181 EHLLGVKLIQSNVSVVQWADWFSAFTDQHAPERFSVRFDRAQMSLDAATQGLGVALESTT 240 Query: 241 VAGRHIRERQLKPVFGLEQCIKVKAHFAVYPARHIKRPAVEAFLGWLREQAA 292 +AGRHI ER+L+PVFGL++ IKVKAHFAVYP RH KRPAVEAFL WL +AA Sbjct: 241 IAGRHIAERRLRPVFGLDKAIKVKAHFAVYPPRHAKRPAVEAFLAWLHGEAA 292 >ref|YP_002945191.1| LysR family transcriptional regulator [Variovorax paradoxus S110] gb|ACS19925.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] Length = 294 Score = 444 bits (1143), Expect = e-123, Method: Compositional matrix adjust. Identities = 215/292 (73%), Positives = 250/292 (85%) Query: 1 MAALPPIPNLQAFEAVARRRSFALAAGELHLTASAVSHQVARLESYLGVRLFERSAHGVH 60 M+ LP + NLQAFEAVARRRSFALAA ELHLTASA+SHQV+RLE++LGVRLFERSAHGV Sbjct: 1 MSTLPAVTNLQAFEAVARRRSFALAASELHLTASAISHQVSRLEAHLGVRLFERSAHGVR 60 Query: 61 ISAAGESYLARIQGAISAITAASMDVKHGVSNSLYIHSAPSIASLWLMERLNGFARAYPD 120 +SAAG+ YL+++ GA+ AI +A+ D++ GVSNSLY+HSAPSIASLWLM RL GFA+AYPD Sbjct: 61 LSAAGDMYLSKVGGALLAIASATDDLRQGVSNSLYVHSAPSIASLWLMSRLRGFAQAYPD 120 Query: 121 ISFNLSAAHTPSNFELGEVDIDIRYGIPNWPGLQVEPLFEERIVPLASPEFIRQNKLKKP 180 IS NLSAAHT S+F LG+ DIDIRYGIPNWP L VEPLFEERIVPLASP FIRQ+ LK+ Sbjct: 121 ISLNLSAAHTTSDFALGQADIDIRYGIPNWPDLVVEPLFEERIVPLASPAFIRQHGLKRI 180 Query: 181 EDLLRVRLIRSNVSVVQWPDWFAIYSPLRTPNQFAVRFDRAQMSLDAATQGLGVALESTT 240 E L V+LI+SNVSVVQW DWF +S R P++FA+RFDRAQMSLDAATQGLGVALES T Sbjct: 181 EQLGGVKLIQSNVSVVQWSDWFGQFSDKRAPDRFAIRFDRAQMSLDAATQGLGVALESAT 240 Query: 241 VAGRHIRERQLKPVFGLEQCIKVKAHFAVYPARHIKRPAVEAFLGWLREQAA 292 +A RHI ER+L+PVFGL+Q IKVKAHFAVYP RH KR +V AFL W+ +AA Sbjct: 241 IAARHIAERKLRPVFGLDQAIKVKAHFAVYPPRHAKRSSVAAFLQWIHAEAA 292 >ref|YP_001561764.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1] gb|ABX33379.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1] Length = 323 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 195/292 (66%), Positives = 236/292 (80%) Query: 1 MAALPPIPNLQAFEAVARRRSFALAAGELHLTASAVSHQVARLESYLGVRLFERSAHGVH 60 MA++P +LQAFEAVARRRSFALAA ELHLTASAVSHQVA+LE+ LGVRLFERSAHGV Sbjct: 20 MASIPTTAHLQAFEAVARRRSFALAASELHLTASAVSHQVAKLEAQLGVRLFERSAHGVR 79 Query: 61 ISAAGESYLARIQGAISAITAASMDVKHGVSNSLYIHSAPSIASLWLMERLNGFARAYPD 120 +S G++YL R+ GA++AI +A+ D++H +SNSLY+H APSIASLWLM RL FARA P Sbjct: 80 LSRPGQAYLERVGGALAAIVSATEDLRHSMSNSLYVHCAPSIASLWLMPRLRDFARACPH 139 Query: 121 ISFNLSAAHTPSNFELGEVDIDIRYGIPNWPGLQVEPLFEERIVPLASPEFIRQNKLKKP 180 I+ NLSAAH+ S+F LG+ DIDIRYGI WP L+VEPLFEER++PLASP F+ ++ L + Sbjct: 140 IALNLSAAHSHSDFALGQADIDIRYGIAQWPDLEVEPLFEERVLPLASPAFVAEHGLARV 199 Query: 181 EDLLRVRLIRSNVSVVQWPDWFAIYSPLRTPNQFAVRFDRAQMSLDAATQGLGVALESTT 240 + LL V LI+SNVS+VQW DWF ++PLR P +FAVRFDRAQMSLDAATQGLGVALES Sbjct: 200 QQLLHVPLIQSNVSIVQWSDWFLAFTPLRAPERFAVRFDRAQMSLDAATQGLGVALESAM 259 Query: 241 VAGRHIRERQLKPVFGLEQCIKVKAHFAVYPARHIKRPAVEAFLGWLREQAA 292 AG HI + +L FG+EQ ++VKAHFAVYP R+ RPAV AFL WL +AA Sbjct: 260 NAGGHIADGRLVAPFGMEQALRVKAHFAVYPTRNAHRPAVAAFLAWLHGEAA 311 >ref|YP_004491128.1| LysR family transcriptional regulator [Delftia sp. Cs1-4] gb|AEF92773.1| transcriptional regulator, LysR family [Delftia sp. Cs1-4] Length = 304 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 194/292 (66%), Positives = 237/292 (81%) Query: 1 MAALPPIPNLQAFEAVARRRSFALAAGELHLTASAVSHQVARLESYLGVRLFERSAHGVH 60 MA++P +LQAFEAVARRRSFALAA ELHLTASAVSHQVA+LE+ LGVRLFERSAHGV Sbjct: 1 MASIPSSAHLQAFEAVARRRSFALAASELHLTASAVSHQVAKLEAQLGVRLFERSAHGVR 60 Query: 61 ISAAGESYLARIQGAISAITAASMDVKHGVSNSLYIHSAPSIASLWLMERLNGFARAYPD 120 +S G++YL R+ GA++AI +A+ D++H +SNSLY+H APSIASLWLM RL FARA P Sbjct: 61 LSRPGQAYLERVGGALAAIVSATEDLRHSMSNSLYVHCAPSIASLWLMPRLRDFARACPH 120 Query: 121 ISFNLSAAHTPSNFELGEVDIDIRYGIPNWPGLQVEPLFEERIVPLASPEFIRQNKLKKP 180 I+ NLSAAH+ S+F LG+ DIDIRYGI WP L+VEPLFEE I+PLASP F+ ++ L++ Sbjct: 121 IALNLSAAHSHSDFALGQADIDIRYGIAQWPELEVEPLFEEHILPLASPAFVAEHGLQRV 180 Query: 181 EDLLRVRLIRSNVSVVQWPDWFAIYSPLRTPNQFAVRFDRAQMSLDAATQGLGVALESTT 240 + LL V LI+SNVS+VQW DWF +S LR P +FAVRFDRAQMSLDAATQGLGVALES Sbjct: 181 QQLLHVPLIQSNVSIVQWSDWFHSFSQLRAPERFAVRFDRAQMSLDAATQGLGVALESAM 240 Query: 241 VAGRHIRERQLKPVFGLEQCIKVKAHFAVYPARHIKRPAVEAFLGWLREQAA 292 AG HI + +L FG+++ ++VKAHFAVYPAR+ +RPAV AFL WL +AA Sbjct: 241 NAGGHIADGRLVAPFGMDRALRVKAHFAVYPARNARRPAVAAFLAWLHAEAA 292