BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0151.p (354 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002501950.1| TRAP dicarboxylate transporter subunit DctP ... 508 e-142 ref|YP_001767557.1| TRAP dicarboxylate transporter subunit DctP ... 501 e-140 ref|YP_001524812.1| TRAP dicarboxylate transporter DctP subunit ... 498 e-139 ref|YP_003774533.1| TRAP-type C4-dicarboxylate transport system ... 395 e-108 ref|YP_002499559.1| TRAP dicarboxylate transporter subunit DctP ... 395 e-108 >ref|YP_002501950.1| TRAP dicarboxylate transporter subunit DctP [Methylobacterium nodulans ORS 2060] gb|ACL61647.1| TRAP dicarboxylate transporter, DctP subunit [Methylobacterium nodulans ORS 2060] Length = 345 Score = 508 bits (1307), Expect = e-142, Method: Compositional matrix adjust. Identities = 235/331 (70%), Positives = 288/331 (87%) Query: 24 RRSLLTAAATLPLFTVWSGPARAAEFNYKLATGQSLDQPVNARLKQATDRIREASAGRLD 83 RRS LTAAA +PL + + PA AAEF+YKLATGQSL QP+NARL+QAT RIREAS GRL+ Sbjct: 15 RRSFLTAAAAVPLVAIRTRPALAAEFSYKLATGQSLTQPINARLEQATQRIREASGGRLE 74 Query: 84 IRFFPASQLGSDTDLLTQVRSGGVEFLNIAGSVISTVVPLAAITNVGFTYSDYQQVWSSV 143 ++FFPASQLGSDTDL+TQVRSGG+EFLNIAGSVISTV AAITNVGF ++DY+QVW Sbjct: 75 MKFFPASQLGSDTDLITQVRSGGIEFLNIAGSVISTVAAGAAITNVGFAFADYEQVWRGA 134 Query: 144 DGELGKLIRAQIDKSGFVSVAKAGDNSFRQISSASKPIKTPADLQGYRIRVPVSPMFTSL 203 DG +G+ +R+QI+K+G + AKA DNSFRQI+SASKPIKTP DL+GYRIRVPVSP+FTSL Sbjct: 135 DGPIGQYVRSQIEKAGLLVPAKAADNSFRQITSASKPIKTPEDLKGYRIRVPVSPIFTSL 194 Query: 204 FKSLGANPTSINFNELYTALQTKLVDGQENGLVAIDSGKLYEVQKYITQTNHIWDPFWML 263 F +LGANPTSINFNELYTALQT+LVDGQENGLVAID+GKLYEVQKY+++TNHIWDPFW++ Sbjct: 195 FSALGANPTSINFNELYTALQTRLVDGQENGLVAIDAGKLYEVQKYVSETNHIWDPFWIV 254 Query: 264 GNRRAFAALPDDLKKIVQREFDRAYMEQRGDVEQLNTTLKEQLTKKGIVFETANRDSFRK 323 NRRAF LP+ L++IV+REFDRA MEQR DV +LN TLK QL+ KG+VFE+A++++FR+ Sbjct: 255 ANRRAFGRLPESLQEIVRREFDRAAMEQREDVARLNGTLKTQLSAKGLVFESADKEAFRR 314 Query: 324 ALSDAGFYKEWRDKFGAAPWAALEAVVGKMS 354 +L AGFY++W++KFG W ALE+V G ++ Sbjct: 315 SLGQAGFYRDWKEKFGQEAWKALESVTGALA 345 >ref|YP_001767557.1| TRAP dicarboxylate transporter subunit DctP [Methylobacterium sp. 4-46] gb|ACA15123.1| TRAP dicarboxylate transporter, DctP subunit [Methylobacterium sp. 4-46] Length = 344 Score = 501 bits (1289), Expect = e-140, Method: Compositional matrix adjust. Identities = 233/331 (70%), Positives = 282/331 (85%) Query: 24 RRSLLTAAATLPLFTVWSGPARAAEFNYKLATGQSLDQPVNARLKQATDRIREASAGRLD 83 RRSLLTAAA +PL + + PARAAEF YKLATGQSL QP+NARL QAT RIREAS GRL+ Sbjct: 14 RRSLLTAAAAVPLVAIRTRPARAAEFTYKLATGQSLTQPINARLDQATQRIREASGGRLE 73 Query: 84 IRFFPASQLGSDTDLLTQVRSGGVEFLNIAGSVISTVVPLAAITNVGFTYSDYQQVWSSV 143 ++FFPASQLGSDTDL+TQVRSGG+EFLNIAGSVISTV AAITNVGF ++DY Q W Sbjct: 74 LKFFPASQLGSDTDLITQVRSGGIEFLNIAGSVISTVAAGAAITNVGFAFADYDQAWRGA 133 Query: 144 DGELGKLIRAQIDKSGFVSVAKAGDNSFRQISSASKPIKTPADLQGYRIRVPVSPMFTSL 203 DG +G+ +R QI+K+G + AKA DNSFRQI+SASKPI+TP DL+GYRIRVPVSP+FTSL Sbjct: 134 DGPIGQYVRTQIEKAGLLVAAKAADNSFRQITSASKPIRTPDDLKGYRIRVPVSPIFTSL 193 Query: 204 FKSLGANPTSINFNELYTALQTKLVDGQENGLVAIDSGKLYEVQKYITQTNHIWDPFWML 263 F +LGA+PTSINFNELYTALQT+LVDGQENGLVAID+GKLYEVQKY+++TNHIWDPFW++ Sbjct: 194 FSALGASPTSINFNELYTALQTRLVDGQENGLVAIDAGKLYEVQKYVSETNHIWDPFWIV 253 Query: 264 GNRRAFAALPDDLKKIVQREFDRAYMEQRGDVEQLNTTLKEQLTKKGIVFETANRDSFRK 323 NRRAF LP+ L++IV+RE DRA EQR DV +LN TLK QL KG+VFE A++D+FR+ Sbjct: 254 ANRRAFGRLPEPLQEIVRRELDRAAQEQREDVARLNGTLKTQLVAKGLVFEAADKDAFRR 313 Query: 324 ALSDAGFYKEWRDKFGAAPWAALEAVVGKMS 354 +L+ AGFY++W++KFG W ALE+V G ++ Sbjct: 314 SLTQAGFYRDWKEKFGPEAWKALESVTGALA 344 >ref|YP_001524812.1| TRAP dicarboxylate transporter DctP subunit [Azorhizobium caulinodans ORS 571] dbj|BAF87894.1| TRAP dicarboxylate transporter DctP subunit [Azorhizobium caulinodans ORS 571] Length = 361 Score = 498 bits (1281), Expect = e-139, Method: Compositional matrix adjust. Identities = 233/332 (70%), Positives = 280/332 (84%), Gaps = 1/332 (0%) Query: 24 RRSLLT-AAATLPLFTVWSGPARAAEFNYKLATGQSLDQPVNARLKQATDRIREASAGRL 82 RR+LL AAA +PL + + PARAAEF++K+ATGQSL QP+NARL+QA RI+EAS GR+ Sbjct: 30 RRTLLAGAAAAIPLVAIRTSPARAAEFSFKVATGQSLTQPINARLEQACARIQEASGGRM 89 Query: 83 DIRFFPASQLGSDTDLLTQVRSGGVEFLNIAGSVISTVVPLAAITNVGFTYSDYQQVWSS 142 +++FFPASQLGSDTDL+TQVRSGG+EFLNIAGSVISTV AAITNVGF ++DY VW Sbjct: 90 ELKFFPASQLGSDTDLITQVRSGGIEFLNIAGSVISTVAAGAAITNVGFAFADYDHVWRG 149 Query: 143 VDGELGKLIRAQIDKSGFVSVAKAGDNSFRQISSASKPIKTPADLQGYRIRVPVSPMFTS 202 VDG +G +R Q++K+G + V+KA DNSFRQI+S SKPI+ PADL+GYRIRVPVSP+FTS Sbjct: 150 VDGAVGTYVRGQVEKAGLLIVSKAADNSFRQITSFSKPIRVPADLKGYRIRVPVSPIFTS 209 Query: 203 LFKSLGANPTSINFNELYTALQTKLVDGQENGLVAIDSGKLYEVQKYITQTNHIWDPFWM 262 LF SLGANPTSINFNELYTALQT+LVDGQENGLVAIDSGKLYEVQKY+++TNHIWDPFW+ Sbjct: 210 LFTSLGANPTSINFNELYTALQTRLVDGQENGLVAIDSGKLYEVQKYVSETNHIWDPFWL 269 Query: 263 LGNRRAFAALPDDLKKIVQREFDRAYMEQRGDVEQLNTTLKEQLTKKGIVFETANRDSFR 322 + NRRAF+ LP DL++IV REFDRA MEQR DV +LN LKEQL +G+ FETA++ +FR Sbjct: 270 MANRRAFSRLPADLQEIVTREFDRAAMEQRADVVRLNGVLKEQLQTRGLAFETADKPAFR 329 Query: 323 KALSDAGFYKEWRDKFGAAPWAALEAVVGKMS 354 K LSD GFYK W+DKFG W ALE V G ++ Sbjct: 330 KELSDNGFYKTWKDKFGTDAWKALETVTGDLA 361 >ref|YP_003774533.1| TRAP-type C4-dicarboxylate transport system periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ62625.1| TRAP-type C4-dicarboxylate transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 348 Score = 395 bits (1015), Expect = e-108, Method: Compositional matrix adjust. Identities = 184/336 (54%), Positives = 248/336 (73%), Gaps = 3/336 (0%) Query: 21 SAKRRSLLTAAAT---LPLFTVWSGPARAAEFNYKLATGQSLDQPVNARLKQATDRIREA 77 S RR LL A A LPLF++ S PA AAEFNYK ATGQ PVN R +QA DRIREA Sbjct: 12 SVSRRQLLKAGAVGAALPLFSIMSRPANAAEFNYKFATGQDPSHPVNKRAQQAIDRIREA 71 Query: 78 SAGRLDIRFFPASQLGSDTDLLTQVRSGGVEFLNIAGSVISTVVPLAAITNVGFTYSDYQ 137 + GRLDI+ FPA+QLGSDTDL++Q+R+GGVEF N A V+ST+VP A I N GF + DY+ Sbjct: 72 TGGRLDIKLFPANQLGSDTDLMSQIRNGGVEFFNQASVVLSTLVPAAGIVNTGFAFHDYK 131 Query: 138 QVWSSVDGELGKLIRAQIDKSGFVSVAKAGDNSFRQISSASKPIKTPADLQGYRIRVPVS 197 +VW ++DG LG +RAQI+K G ++++K DN FRQI++++KPIKT ADL+G ++RVP + Sbjct: 132 EVWQAMDGPLGAYVRAQIEKVGLLTMSKPWDNGFRQITTSTKPIKTAADLKGLKLRVPAA 191 Query: 198 PMFTSLFKSLGANPTSINFNELYTALQTKLVDGQENGLVAIDSGKLYEVQKYITQTNHIW 257 PM TSLF +LGA+PT INFNE+Y++LQTKLV+GQEN L I + +LYEVQK+ T +NH+W Sbjct: 192 PMLTSLFSALGASPTPINFNEVYSSLQTKLVEGQENPLAIISTARLYEVQKFCTISNHVW 251 Query: 258 DPFWMLGNRRAFAALPDDLKKIVQREFDRAYMEQRGDVEQLNTTLKEQLTKKGIVFETAN 317 D +W+LGNRRAF LP D+++IV+RE D+A ++R D+ L+ + L KG+ A+ Sbjct: 252 DAYWILGNRRAFEKLPKDIQEIVRRELDKAATDERADIASLSGFARNDLQGKGVQIIEAD 311 Query: 318 RDSFRKALSDAGFYKEWRDKFGAAPWAALEAVVGKM 353 ++SF++AL+ FYK+ R KFG W L+ VG + Sbjct: 312 KNSFKEALARGSFYKDLRAKFGDDAWKLLQNSVGSL 347 >ref|YP_002499559.1| TRAP dicarboxylate transporter subunit DctP [Methylobacterium nodulans ORS 2060] gb|ACL59256.1| TRAP dicarboxylate transporter, DctP subunit [Methylobacterium nodulans ORS 2060] Length = 338 Score = 395 bits (1015), Expect = e-108, Method: Compositional matrix adjust. Identities = 185/337 (54%), Positives = 247/337 (73%) Query: 18 SLPSAKRRSLLTAAATLPLFTVWSGPARAAEFNYKLATGQSLDQPVNARLKQATDRIREA 77 S P+ RR+LL AA+LPL T+ PA AAEF YKLATGQ PVN R ++A +RIREA Sbjct: 2 STPTLSRRTLLAGAASLPLVTILRRPANAAEFEYKLATGQDPTHPVNLRAQEALNRIREA 61 Query: 78 SAGRLDIRFFPASQLGSDTDLLTQVRSGGVEFLNIAGSVISTVVPLAAITNVGFTYSDYQ 137 S GRLDI+ FPA+QLGSDTDLL+QVR+G VEF N++ S+++T +P A++ N GF + DY Sbjct: 62 SGGRLDIKLFPANQLGSDTDLLSQVRNGSVEFFNLSTSILATFIPAASLPNTGFAFKDYD 121 Query: 138 QVWSSVDGELGKLIRAQIDKSGFVSVAKAGDNSFRQISSASKPIKTPADLQGYRIRVPVS 197 VW+++DG LG IR QI K+ +V+KA DN FR I+S+++ I+TP DL+G++IRVP + Sbjct: 122 AVWAAMDGGLGNYIREQIAKTPIQTVSKAWDNGFRHITSSTREIRTPEDLKGFKIRVPPA 181 Query: 198 PMFTSLFKSLGANPTSINFNELYTALQTKLVDGQENGLVAIDSGKLYEVQKYITQTNHIW 257 PM TSLFK+L A +NFNELY+ALQTK+ +GQEN L + +LYEVQK + T H+W Sbjct: 182 PMLTSLFKALEAGAAPLNFNELYSALQTKIFEGQENPLAITATTRLYEVQKSCSLTGHVW 241 Query: 258 DPFWMLGNRRAFAALPDDLKKIVQREFDRAYMEQRGDVEQLNTTLKEQLTKKGIVFETAN 317 D +W+LGN+RAF LP+DL+ +V RE DR+ +QR D+ +L+ +L+++LT KGI F N Sbjct: 242 DGYWILGNKRAFQRLPEDLRALVTRELDRSADDQRADIVRLSASLRQELTAKGITFIEVN 301 Query: 318 RDSFRKALSDAGFYKEWRDKFGAAPWAALEAVVGKMS 354 RD FR AL FYK+WR KFG A W LEAV GK++ Sbjct: 302 RDPFRDALGRTTFYKDWRAKFGDAAWGHLEAVSGKLA 338