BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0143.p (236 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776197.1| TRAP-type C4-dicarboxylate-binding periplasm... 413 e-114 ref|YP_003774270.1| TRAP-type C4-dicarboxylate transport system ... 383 e-104 ref|ZP_08274273.1| TRAP-type C4-dicarboxylate transport system, ... 372 e-101 ref|YP_003448127.1| C4-dicarboxylate-binding periplasmic protein... 345 3e-93 emb|CAM75978.1| Bacterial extracellular solute-binding protein, ... 340 8e-92 >ref|YP_003776197.1| TRAP-type C4-dicarboxylate-binding periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ64289.1| TRAP-type C4-dicarboxylate-binding periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 344 Score = 413 bits (1062), Expect = e-114, Method: Compositional matrix adjust. Identities = 192/235 (81%), Positives = 215/235 (91%) Query: 2 KEYEVFDLPYIFPNRAVLARITEGPIGQNLFRKLEAKGIKGLAYWDNGMKVMTANKPLHK 61 +E+EVFDLPYIFP++AVL R+TEGPIGQ LF+KLE KGIKGLAYWDNGMKVMTAN+PLHK Sbjct: 108 REFEVFDLPYIFPDKAVLKRVTEGPIGQGLFQKLEGKGIKGLAYWDNGMKVMTANRPLHK 167 Query: 62 VDDFRGMKMRIQSSKVLDEQFRALKANPQVLAFSEVYQAMQTGVVDGSENTPSNIYSQKV 121 V DFR +KMRIQSSKVLDEQFRALKANPQVLAFSEVYQAMQTGVVDGSENTPSN+Y+QK+ Sbjct: 168 VADFRALKMRIQSSKVLDEQFRALKANPQVLAFSEVYQAMQTGVVDGSENTPSNVYTQKM 227 Query: 122 HEVQSQLTVSDHGYIGYAVIVNKKFWESLPPDVRGQLESAMKDATRYANAIAQQENEDAL 181 HEVQS LTVSDHGYIGYAVIVNKKFWE+LP D+R QLE+AMK AT YAN IAQ+EN+DAL Sbjct: 228 HEVQSNLTVSDHGYIGYAVIVNKKFWEALPADIRSQLEAAMKQATLYANTIAQKENDDAL 287 Query: 182 AAIKASGKTKVYYLTDAEKAEWRKALLPVHKSMESRVGKDLIQEIYKETANLGAK 236 AAIKASGKT+VY L++ EKAEWR+ALLPVHKSM +RVG DLI+ IYKE+ G K Sbjct: 288 AAIKASGKTRVYTLSEQEKAEWRRALLPVHKSMAARVGADLIEAIYKESEAAGVK 342 >ref|YP_003774270.1| TRAP-type C4-dicarboxylate transport system periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ62362.1| TRAP-type C4-dicarboxylate transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 334 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 178/236 (75%), Positives = 205/236 (86%) Query: 1 VKEYEVFDLPYIFPNRAVLARITEGPIGQNLFRKLEAKGIKGLAYWDNGMKVMTANKPLH 60 VKE+EVFDLPYIFP + VL R+TEGPIG++LF+KLE KGI GLAYWDNG KVM+ANKPLH Sbjct: 99 VKEFEVFDLPYIFPTKEVLYRVTEGPIGKDLFKKLEPKGITGLAYWDNGFKVMSANKPLH 158 Query: 61 KVDDFRGMKMRIQSSKVLDEQFRALKANPQVLAFSEVYQAMQTGVVDGSENTPSNIYSQK 120 DFRG+KMRIQSSKVLD Q RAL ANPQVLAFSEVYQA+QTGVVDG+EN PSN+Y+QK Sbjct: 159 HPADFRGLKMRIQSSKVLDAQMRALGANPQVLAFSEVYQALQTGVVDGTENPPSNLYTQK 218 Query: 121 VHEVQSQLTVSDHGYIGYAVIVNKKFWESLPPDVRGQLESAMKDATRYANAIAQQENEDA 180 +HEVQ +TVS+HGY+GYAVIVNKKFW+ LP D+R QLE AMKDAT+YANAIAQQEN+ A Sbjct: 219 MHEVQKHVTVSNHGYLGYAVIVNKKFWDGLPSDIRTQLEGAMKDATKYANAIAQQENDAA 278 Query: 181 LAAIKASGKTKVYYLTDAEKAEWRKALLPVHKSMESRVGKDLIQEIYKETANLGAK 236 LAA++ +GKT VY LTDAEKAEWRKALLPV + M SR+GKDLI + KE+A LG K Sbjct: 279 LAAVEKTGKTTVYRLTDAEKAEWRKALLPVQQQMASRIGKDLIDAVNKESAALGQK 334 >ref|ZP_08274273.1| TRAP-type C4-dicarboxylate transport system, periplasmic component [Oxalobacteraceae bacterium IMCC9480] gb|EGF32246.1| TRAP-type C4-dicarboxylate transport system, periplasmic component [Oxalobacteraceae bacterium IMCC9480] Length = 337 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 172/236 (72%), Positives = 203/236 (86%) Query: 1 VKEYEVFDLPYIFPNRAVLARITEGPIGQNLFRKLEAKGIKGLAYWDNGMKVMTANKPLH 60 VKE+E+FDLPYIFP + VL R+TEGPIG++LF+KLE+KGI GLAYWDNG KVM+ANKPL Sbjct: 102 VKEFELFDLPYIFPGKDVLYRVTEGPIGKDLFKKLESKGITGLAYWDNGFKVMSANKPLK 161 Query: 61 KVDDFRGMKMRIQSSKVLDEQFRALKANPQVLAFSEVYQAMQTGVVDGSENTPSNIYSQK 120 DF+G+KMRIQSSKVLD + RAL ANPQVLAFSEVYQA+QTGVVDG+EN PSN+Y+QK Sbjct: 162 TPADFKGLKMRIQSSKVLDAEMRALGANPQVLAFSEVYQALQTGVVDGTENPPSNLYTQK 221 Query: 121 VHEVQSQLTVSDHGYIGYAVIVNKKFWESLPPDVRGQLESAMKDATRYANAIAQQENEDA 180 +HEVQS +TVS+HGY+GYAVIVNKKFW+ LP D+R LE+AMKDAT+YANAIAQQEN+ A Sbjct: 222 MHEVQSNVTVSNHGYLGYAVIVNKKFWDGLPADIRTGLEAAMKDATKYANAIAQQENDKA 281 Query: 181 LAAIKASGKTKVYYLTDAEKAEWRKALLPVHKSMESRVGKDLIQEIYKETANLGAK 236 + A++ SGKT+VY L D EKAEWRKALLPV K MESR+GKDLI + KE LG K Sbjct: 282 MEAVRKSGKTEVYVLNDKEKAEWRKALLPVQKDMESRIGKDLITAVGKEATTLGYK 337 >ref|YP_003448127.1| C4-dicarboxylate-binding periplasmic protein [Azospirillum sp. B510] dbj|BAI71583.1| C4-dicarboxylate-binding periplasmic protein [Azospirillum sp. B510] Length = 340 Score = 345 bits (885), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 164/235 (69%), Positives = 196/235 (83%) Query: 2 KEYEVFDLPYIFPNRAVLARITEGPIGQNLFRKLEAKGIKGLAYWDNGMKVMTANKPLHK 61 KE+EVFDLPYIFP++ VL R+T+G IG++LFRKLE+KGI GLAYWDNG K+M+ANKPL K Sbjct: 105 KEFEVFDLPYIFPSKEVLQRVTKGEIGKSLFRKLESKGIVGLAYWDNGFKIMSANKPLIK 164 Query: 62 VDDFRGMKMRIQSSKVLDEQFRALKANPQVLAFSEVYQAMQTGVVDGSENTPSNIYSQKV 121 +D +G+KMRIQSSKVLD Q RAL A PQV+AFSEVYQA+QTGVVDG+EN PSN+Y+QK+ Sbjct: 165 PEDVKGLKMRIQSSKVLDAQMRALGALPQVMAFSEVYQALQTGVVDGTENPPSNMYTQKM 224 Query: 122 HEVQSQLTVSDHGYIGYAVIVNKKFWESLPPDVRGQLESAMKDATRYANAIAQQENEDAL 181 HEVQ T++DHGY+GYAVIVNKKFWE LP DVRG+LE AMK+AT YAN IAQ EN+ AL Sbjct: 225 HEVQKNATLTDHGYLGYAVIVNKKFWEGLPADVRGKLEEAMKEATDYANDIAQNENDVAL 284 Query: 182 AAIKASGKTKVYYLTDAEKAEWRKALLPVHKSMESRVGKDLIQEIYKETANLGAK 236 A +KASGKT+ + T E+ W KAL PVHK E+RVGKDLI+ IYKE+A G K Sbjct: 285 AQMKASGKTEFHSQTKEEREAWIKALKPVHKDAEARVGKDLIEAIYKESAAAGFK 339 >emb|CAM75978.1| Bacterial extracellular solute-binding protein, family 7 [Magnetospirillum gryphiswaldense MSR-1] Length = 335 Score = 340 bits (873), Expect = 8e-92, Method: Compositional matrix adjust. Identities = 156/236 (66%), Positives = 191/236 (80%) Query: 1 VKEYEVFDLPYIFPNRAVLARITEGPIGQNLFRKLEAKGIKGLAYWDNGMKVMTANKPLH 60 VKE+EVFDLPYIFP++ VL +T+GP+GQ L +KLE KGI+GLAYWDNG KV++ANKP+ Sbjct: 99 VKEFEVFDLPYIFPSKEVLRAVTDGPVGQGLLKKLETKGIRGLAYWDNGFKVLSANKPIK 158 Query: 61 KVDDFRGMKMRIQSSKVLDEQFRALKANPQVLAFSEVYQAMQTGVVDGSENTPSNIYSQK 120 D +G+K+RIQSSKVLD Q RAL A PQ +AFSEVYQA+QTGVVDG+EN PSN+++QK Sbjct: 159 TPADLKGVKLRIQSSKVLDAQMRALAALPQSMAFSEVYQALQTGVVDGTENPPSNMFTQK 218 Query: 121 VHEVQSQLTVSDHGYIGYAVIVNKKFWESLPPDVRGQLESAMKDATRYANAIAQQENEDA 180 +HEVQ TV++HGY+GYAVIVNKKFW+ LP D R LE AM +A+R+ANAIAQQEN+D+ Sbjct: 219 MHEVQKHATVTNHGYLGYAVIVNKKFWDGLPTDTRAVLEGAMNEASRFANAIAQQENDDS 278 Query: 181 LAAIKASGKTKVYYLTDAEKAEWRKALLPVHKSMESRVGKDLIQEIYKETANLGAK 236 LAA+KASGKT+ Y T E WRKALLPVH ME RVGK++IQ +Y E LG K Sbjct: 279 LAAMKASGKTEFYQPTKEELEAWRKALLPVHAEMEGRVGKEIIQAVYAEATKLGFK 334