BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0123.p         (167 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776202.1| hypothetical protein Hsero_2799 [Herbaspiril...   194   4e-48
ref|ZP_03697171.1| conserved hypothetical protein [Lutiella nitr...   173   7e-42
ref|YP_001156020.1| hypothetical protein Pnuc_1241 [Polynucleoba...   165   3e-39
ref|YP_982372.1| hypothetical protein Pnap_2143 [Polaromonas nap...   160   5e-38
ref|YP_984025.1| hypothetical protein Pnap_3808 [Polaromonas nap...   160   6e-38

>ref|YP_003776202.1| hypothetical protein Hsero_2799 [Herbaspirillum seropedicae SmR1]
 gb|ADJ64294.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 286

 Score =  194 bits (493), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 95/117 (81%), Positives = 100/117 (85%)

Query: 50  EADWRRRIEPDPVLLFRYSALTFNGHRIHYDRSYVTGVEGYPGLIVHGPLIATLLVDLLG 109
           +A W RRI PDPVLLFRYSALTFNGHRIHYDRSYVTGVEGYPGLIVHGPLIATLL DLL 
Sbjct: 169 DALWSRRIVPDPVLLFRYSALTFNGHRIHYDRSYVTGVEGYPGLIVHGPLIATLLADLLA 228

Query: 110 RSLPLARLLEFNFRAVGSLFDIEAFEICGKLSADGKRAELWAQNLRGELAMQAEAVL 166
           R +P A L  F+FRAVGSLFD EAF +CGK SADG+R  LWAQN RGELAMQAEA L
Sbjct: 229 RQMPQAVLRAFDFRAVGSLFDTEAFTLCGKPSADGRRVALWAQNERGELAMQAEATL 285


>ref|ZP_03697171.1| conserved hypothetical protein [Lutiella nitroferrum 2002]
 gb|EEG09657.1| conserved hypothetical protein [Lutiella nitroferrum 2002]
          Length = 284

 Score =  173 bits (439), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 89/135 (65%), Positives = 100/135 (74%), Gaps = 1/135 (0%)

Query: 33  LAGTLDXAPVAPKQAPAEADWRRRIEPDPVLLFRYSALTFNGHRIHYDRSYVTGVEGYPG 92
           LA   D  P  P+ APA+ DW R I PD VLLFRYSALTFNGHRIHYDR YVT VEGYPG
Sbjct: 151 LAKPGDPVP-QPQAAPADHDWLREIHPDDVLLFRYSALTFNGHRIHYDRRYVTEVEGYPG 209

Query: 93  LIVHGPLIATLLVDLLGRSLPLARLLEFNFRAVGSLFDIEAFEICGKLSADGKRAELWAQ 152
           LIVHGPLIATLLVDLL R+LP A L  F+FRAV  +FDI  F +CG+L  DGK  +LWA+
Sbjct: 210 LIVHGPLIATLLVDLLRRNLPGATLSNFSFRAVKPVFDIAPFSVCGRLDPDGKIVKLWAK 269

Query: 153 NLRGELAMQAEAVLA 167
           +  G L M+A A LA
Sbjct: 270 DAEGWLTMEATATLA 284


>ref|YP_001156020.1| hypothetical protein Pnuc_1241 [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gb|ABP34456.1| conserved hypothetical protein [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 294

 Score =  165 bits (417), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 84/134 (62%), Positives = 97/134 (72%), Gaps = 4/134 (2%)

Query: 38  DXAPVAPKQAPAEADWRRRIEPDPVLLFRYSALTFNGHRIHYDRSYVTGVEGYPGLIVHG 97
           D  PVAP  AP++A W + I PD VLLFRYSALTFNGHRIHYDR YVT VEGYPGLIVHG
Sbjct: 161 DDKPVAPTPAPSDAAWTKTITPDDVLLFRYSALTFNGHRIHYDRKYVTEVEGYPGLIVHG 220

Query: 98  PLIATLLVDLLGRSLPLARLLEFNFRAVGSLFDIEAFEICGK--LSAD--GKRAELWAQN 153
           PLIATLLVDL+ +S+P ++L  F FRA+   FDI  F++  K  L  D  GK   +WAQ+
Sbjct: 221 PLIATLLVDLVRQSIPDSKLKSFEFRAIRPTFDINIFKVSAKPDLEKDLSGKTISIWAQD 280

Query: 154 LRGELAMQAEAVLA 167
             G L MQA AVLA
Sbjct: 281 HEGWLTMQASAVLA 294


>ref|YP_982372.1| hypothetical protein Pnap_2143 [Polaromonas naphthalenivorans CJ2]
 gb|ABM37451.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2]
          Length = 300

 Score =  160 bits (406), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 86/138 (62%), Positives = 97/138 (70%), Gaps = 3/138 (2%)

Query: 30  AAALAGTLDXAPVAPKQAPAEADWRRRIEPDPVLLFRYSALTFNGHRIHYDRSYVTGVEG 89
           AAA  G     PVA +Q    A W+R I PD VLLFRYSALTFNGHRIHYDR YVT VEG
Sbjct: 166 AAAQPGDPVPPPVAAEQG---AAWQREITPDDVLLFRYSALTFNGHRIHYDRKYVTEVEG 222

Query: 90  YPGLIVHGPLIATLLVDLLGRSLPLARLLEFNFRAVGSLFDIEAFEICGKLSADGKRAEL 149
           YPGLIVHGPLIATLLVDL+ R LP A +  FNF+AV   FD+  F + G+ S DGK  +L
Sbjct: 223 YPGLIVHGPLIATLLVDLVRRQLPGAFIKSFNFKAVRPTFDLHPFRLNGQPSPDGKTVKL 282

Query: 150 WAQNLRGELAMQAEAVLA 167
           WA++  G L MQA A LA
Sbjct: 283 WAEDHEGWLTMQATAELA 300


>ref|YP_984025.1| hypothetical protein Pnap_3808 [Polaromonas naphthalenivorans CJ2]
 gb|ABM39104.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2]
          Length = 285

 Score =  160 bits (405), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 81/130 (62%), Positives = 92/130 (70%), Gaps = 1/130 (0%)

Query: 38  DXAPVAPKQAPAEADWRRRIEPDPVLLFRYSALTFNGHRIHYDRSYVTGVEGYPGLIVHG 97
           D +P  P+ AP  + W RRI PD VLLFRYSALTFNGHRIHYDR YVT VEGYPGLIVHG
Sbjct: 157 DVSP-PPQAAPEASAWERRIIPDDVLLFRYSALTFNGHRIHYDRKYVTEVEGYPGLIVHG 215

Query: 98  PLIATLLVDLLGRSLPLARLLEFNFRAVGSLFDIEAFEICGKLSADGKRAELWAQNLRGE 157
           PLIATLL+DLL R  P A++L F F+AV   FDI  F + G+ S DGK   LW ++  G 
Sbjct: 216 PLIATLLMDLLRRQQPDAKVLRFEFKAVRPTFDIHPFSVHGQPSPDGKTVHLWGRDHEGW 275

Query: 158 LAMQAEAVLA 167
           L M A A LA
Sbjct: 276 LTMDATATLA 285