BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0120.p (308 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776203.1| LysR family transcription regulator protein ... 523 e-146 gb|AEA83621.1| LysR family transcriptional regulator [Pseudomona... 344 1e-92 ref|YP_004713972.1| LysR family transcriptional regulator [Pseud... 343 1e-92 ref|YP_001349981.1| transcriptional regulator [Pseudomonas aerug... 343 2e-92 ref|ZP_06880244.1| putative transcriptional regulator [Pseudomon... 343 2e-92 >ref|YP_003776203.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64295.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 321 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 253/297 (85%), Positives = 273/297 (91%) Query: 1 MLFDLTDLRLFILIAELNSLTRSAERMNLSLAATSNRIKELEARFGMRLLYRESKGVQLT 60 MLFDLTDLRLFILIAE NSLTRSAERMNLSL ATSNRIKELE RFG RLLYRESKGVQLT Sbjct: 1 MLFDLTDLRLFILIAEHNSLTRSAERMNLSLGATSNRIKELETRFGTRLLYRESKGVQLT 60 Query: 61 PAGQTFLTHAQQFMQQVERLKGDMQQYNNGIKGYIRIFANTTAVTEFMPEILGKFLTLHP 120 PAG T L HAQQFMQQVE LK DMQQYNNGIKGYIRIFANTTAVTEFMPEILGKFL HP Sbjct: 61 PAGHTLLHHAQQFMQQVEHLKSDMQQYNNGIKGYIRIFANTTAVTEFMPEILGKFLARHP 120 Query: 121 QVNVALEERLNHDIMRGIQEGTADIGIVAGPVQGDGLEILNFSTDRLVLAAALEHPLAGI 180 QVNVALEERLNHDI+RGIQEGTADIGIVAGPVQG+GL+ILNFSTDRLVLA ALEHPLA Sbjct: 121 QVNVALEERLNHDILRGIQEGTADIGIVAGPVQGEGLQILNFSTDRLVLATALEHPLADA 180 Query: 181 GKVSFAETLEYEHVGLHEGSTLHHFLNRIVSESGQRLKLRIQVRSFEAMCRMVETNVGIG 240 + F +TLEYEH+GLHEGSTLHHFL++IV+E+GQRLKLRIQVRSFEAMCRM+ETNVGIG Sbjct: 181 PSLPFIQTLEYEHIGLHEGSTLHHFLSKIVAENGQRLKLRIQVRSFEAMCRMIETNVGIG 240 Query: 241 IVPHSAALRHKQTMQLSLIELTDPWSVRERSMVVQSLDALPLYARDLVEFIRQQTAQ 297 I+P SAA RH+QTMQLS++EL+DPWSVRERSMVVQ +D L +AR+LVEFIR+QTAQ Sbjct: 241 ILPRSAAQRHQQTMQLSVVELSDPWSVRERSMVVQDIDTLSPHARNLVEFIREQTAQ 297 >gb|AEA83621.1| LysR family transcriptional regulator [Pseudomonas stutzeri DSM 4166] Length = 297 Score = 344 bits (882), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 170/288 (59%), Positives = 217/288 (75%) Query: 1 MLFDLTDLRLFILIAELNSLTRSAERMNLSLAATSNRIKELEARFGMRLLYRESKGVQLT 60 M FDL DLRLFI IAE SLT+ A R +LS AA S RIK LEA+F RLLYR+S+GV+LT Sbjct: 1 MHFDLADLRLFIHIAESPSLTQGARRAHLSPAAASARIKALEAQFDSRLLYRDSRGVELT 60 Query: 61 PAGQTFLTHAQQFMQQVERLKGDMQQYNNGIKGYIRIFANTTAVTEFMPEILGKFLTLHP 120 PAG L HA+ M+QV+ LK + +Y G+IRIFANTTAVTEF+PE+L FL P Sbjct: 61 PAGHKLLQHARLIMRQVDYLKSEFAEYGTDSAGHIRIFANTTAVTEFLPEVLAGFLAERP 120 Query: 121 QVNVALEERLNHDIMRGIQEGTADIGIVAGPVQGDGLEILNFSTDRLVLAAALEHPLAGI 180 V V L+ERL+ DI+RG+ +G+ D+GI+AGPVQ +GL++L+FSTDRL+LA + HPLAG Sbjct: 121 GVTVDLQERLSRDIVRGVLDGSTDMGIIAGPVQAEGLQVLHFSTDRLLLAVPVGHPLAGE 180 Query: 181 GKVSFAETLEYEHVGLHEGSTLHHFLNRIVSESGQRLKLRIQVRSFEAMCRMVETNVGIG 240 +V+ +TL Y+H+GLHEGSTL FL V + G +L LRIQV SFEA+CRM+E VGIG Sbjct: 181 AQVTLRQTLAYQHIGLHEGSTLLTFLRDQVEKLGGQLSLRIQVSSFEAVCRMIEAGVGIG 240 Query: 241 IVPHSAALRHKQTMQLSLIELTDPWSVRERSMVVQSLDALPLYARDLV 288 I+P SAA RH +TMQL+L+ L +PW+VRERS++V+ LDALP R L+ Sbjct: 241 IIPESAARRHSRTMQLALVTLDEPWAVRERSILVRELDALPGSVRALI 288 >ref|YP_004713972.1| LysR family transcriptional regulator [Pseudomonas stutzeri ATCC 17588 = LMG 11199] gb|AEJ04883.1| LysR family transcriptional regulator [Pseudomonas stutzeri ATCC 17588 = LMG 11199] Length = 297 Score = 343 bits (881), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 170/288 (59%), Positives = 217/288 (75%) Query: 1 MLFDLTDLRLFILIAELNSLTRSAERMNLSLAATSNRIKELEARFGMRLLYRESKGVQLT 60 M FDL DLRLFI IAE SLT+ A R +LS AA S RIK LEA+F RLLYR+S+GV+LT Sbjct: 1 MHFDLADLRLFIHIAESPSLTQGARRAHLSPAAASARIKALEAQFDSRLLYRDSRGVELT 60 Query: 61 PAGQTFLTHAQQFMQQVERLKGDMQQYNNGIKGYIRIFANTTAVTEFMPEILGKFLTLHP 120 PAG L HA+ M+QV+ LK + +Y G+IRIFANTTAVTEF+PE+L FL P Sbjct: 61 PAGHKLLQHARLIMRQVDYLKSEFAEYGTDSAGHIRIFANTTAVTEFLPEVLAGFLAERP 120 Query: 121 QVNVALEERLNHDIMRGIQEGTADIGIVAGPVQGDGLEILNFSTDRLVLAAALEHPLAGI 180 V V L+ERL+ DI+RG+ +G+ D+GI+AGPVQ +GL++L+FSTDRL+LA + HPLAG Sbjct: 121 GVTVDLQERLSRDIVRGVLDGSTDMGIIAGPVQAEGLQVLHFSTDRLLLAVPVGHPLAGE 180 Query: 181 GKVSFAETLEYEHVGLHEGSTLHHFLNRIVSESGQRLKLRIQVRSFEAMCRMVETNVGIG 240 +V+ +TL Y+H+GLHEGSTL FL V + G +L LRIQV SFEA+CRM+E VGIG Sbjct: 181 AQVTLRQTLVYQHIGLHEGSTLLTFLRDQVEKLGGQLSLRIQVSSFEAVCRMIEAGVGIG 240 Query: 241 IVPHSAALRHKQTMQLSLIELTDPWSVRERSMVVQSLDALPLYARDLV 288 I+P SAA RH +TMQL+L+ L +PW+VRERS++V+ LDALP R L+ Sbjct: 241 IIPESAARRHSRTMQLALVTLDEPWAVRERSILVRELDALPGSVRALI 288 >ref|YP_001349981.1| transcriptional regulator [Pseudomonas aeruginosa PA7] gb|ABR81723.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 298 Score = 343 bits (881), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 167/289 (57%), Positives = 218/289 (75%) Query: 1 MLFDLTDLRLFILIAELNSLTRSAERMNLSLAATSNRIKELEARFGMRLLYRESKGVQLT 60 M FDL DLRLFI IAE SLT+ A R +LS AA S RIK LE + G RLLYR+S+GV+LT Sbjct: 1 MHFDLADLRLFIHIAESPSLTQGARRAHLSPAAASARIKALEGQLGSRLLYRDSRGVELT 60 Query: 61 PAGQTFLTHAQQFMQQVERLKGDMQQYNNGIKGYIRIFANTTAVTEFMPEILGKFLTLHP 120 PAGQ L HA+ M+QVE LK + +Y + G+IRIFANTTAVTEF+PEIL FL P Sbjct: 61 PAGQRLLQHARLIMRQVEYLKSEFTEYGSDAAGHIRIFANTTAVTEFLPEILAGFLAARP 120 Query: 121 QVNVALEERLNHDIMRGIQEGTADIGIVAGPVQGDGLEILNFSTDRLVLAAALEHPLAGI 180 V+V L+ERL+ DI+RG+ +G+ D+GI+AGPV GL++L+FSTDRLV+A HPLAG Sbjct: 121 GVSVDLQERLSRDIVRGVLDGSTDLGIIAGPVAASGLQVLHFSTDRLVMAVPQGHPLAGQ 180 Query: 181 GKVSFAETLEYEHVGLHEGSTLHHFLNRIVSESGQRLKLRIQVRSFEAMCRMVETNVGIG 240 +V +TL+++H+GL EG+TLH FL V + G++L LRIQV SFEA+CRM+E VGIG Sbjct: 181 ARVRLRDTLQFQHIGLPEGTTLHAFLYERVEQMGEQLSLRIQVSSFEAICRMIEGGVGIG 240 Query: 241 IVPHSAALRHKQTMQLSLIELTDPWSVRERSMVVQSLDALPLYARDLVE 289 ++P SAA RH +TM+L+ IEL +PW++RERS++V+ L+ALP R L+E Sbjct: 241 VIPQSAARRHSRTMKLATIELDEPWAIRERSLLVRDLEALPSCVRALIE 289 >ref|ZP_06880244.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gb|EGM18888.1| putative transcriptional regulator [Pseudomonas aeruginosa 152504] Length = 298 Score = 343 bits (880), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 167/289 (57%), Positives = 217/289 (75%) Query: 1 MLFDLTDLRLFILIAELNSLTRSAERMNLSLAATSNRIKELEARFGMRLLYRESKGVQLT 60 M FDL DLRLFI IAE SLT+ A R LS AA S R+K LE + G RLLYR+S+GV+LT Sbjct: 1 MHFDLADLRLFIHIAESPSLTQGARRAFLSPAAASARVKALEGQLGSRLLYRDSRGVELT 60 Query: 61 PAGQTFLTHAQQFMQQVERLKGDMQQYNNGIKGYIRIFANTTAVTEFMPEILGKFLTLHP 120 PAGQ L HA+ M+QVE LK + +Y + G+IRIFANTTAVTEF+PEIL FL P Sbjct: 61 PAGQRLLQHARLIMRQVEYLKSEFTEYGSDAAGHIRIFANTTAVTEFLPEILAGFLAARP 120 Query: 121 QVNVALEERLNHDIMRGIQEGTADIGIVAGPVQGDGLEILNFSTDRLVLAAALEHPLAGI 180 V V L+ERL+ DI+RG+ +G+ D+GI+AGPV GL++L+FSTDRLV+A HPLAG Sbjct: 121 GVTVDLQERLSRDIVRGVLDGSTDLGIIAGPVAASGLQVLHFSTDRLVMAVPQGHPLAGQ 180 Query: 181 GKVSFAETLEYEHVGLHEGSTLHHFLNRIVSESGQRLKLRIQVRSFEAMCRMVETNVGIG 240 +VS +TL+++H+GL EG+TLH FL V + G++L LRIQV SFEA+CRM+E VGIG Sbjct: 181 ARVSLRDTLQFQHIGLPEGTTLHAFLYERVEQMGEQLSLRIQVSSFEAICRMIEGGVGIG 240 Query: 241 IVPHSAALRHKQTMQLSLIELTDPWSVRERSMVVQSLDALPLYARDLVE 289 ++P SAA RH +TM+L+ IEL +PW++RERS++V+ L+ALP R L+E Sbjct: 241 VIPQSAARRHSRTMKLATIELDEPWAIRERSLLVRDLEALPSCLRALIE 289