BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0119.p         (110 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776204.1| transmembrane permease [Herbaspirillum serop...   182   2e-44
ref|NP_521751.1| hypothetical protein RS04702 [Ralstonia solanac...   127   4e-28
ref|YP_003005075.1| hypothetical protein Dd1591_2772 [Dickeya ze...   127   7e-28
ref|ZP_07673878.1| membrane protein [Ralstonia sp. 5_7_47FAA] >g...   126   1e-27
ref|ZP_03697157.1| protein of unknown function DUF81 [Lutiella n...   126   1e-27

>ref|YP_003776204.1| transmembrane permease [Herbaspirillum seropedicae SmR1]
 gb|ADJ64296.1| transmembrane permease protein [Herbaspirillum seropedicae SmR1]
          Length = 254

 Score =  182 bits (462), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 92/110 (83%), Positives = 101/110 (91%)

Query: 1   MGLAAGASAGFFSVGGAIVAVPGLVGLFGMTQTAAQGLGLAMVTPGTLVALWTYASAGHV 60
           +GL+AGASAGFFSVGGAIVAVP L   FGMTQTAAQGLGLAMVTPGTLVALWTYA AGHV
Sbjct: 145 VGLSAGASAGFFSVGGAIVAVPLLTAFFGMTQTAAQGLGLAMVTPGTLVALWTYAHAGHV 204

Query: 61  DWSIGIPLALGGVLSISWGVALAHHLPERRLRMLFCGALIAIAAWMMTHG 110
           DW++GIP+ALGGVLSISWGVALAHHLPERRLR+LFCGAL+ ++ WMM  G
Sbjct: 205 DWAVGIPMALGGVLSISWGVALAHHLPERRLRILFCGALLLLSVWMMVGG 254


>ref|NP_521751.1| hypothetical protein RS04702 [Ralstonia solanacearum GMI1000]
 emb|CAD17341.1| probable permease transmembrane protein [Ralstonia solanacearum
           GMI1000]
          Length = 263

 Score =  127 bits (320), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 65/110 (59%), Positives = 82/110 (74%)

Query: 1   MGLAAGASAGFFSVGGAIVAVPGLVGLFGMTQTAAQGLGLAMVTPGTLVALWTYASAGHV 60
           +G+A+G  +G F+VGG +V VP LV LFGM+QT AQG+ LA+V PG+L+AL TYA AGHV
Sbjct: 153 LGIASGGMSGIFTVGGGLVVVPALVTLFGMSQTRAQGMALALVVPGSLIALATYAHAGHV 212

Query: 61  DWSIGIPLALGGVLSISWGVALAHHLPERRLRMLFCGALIAIAAWMMTHG 110
            W  GIPLALGG+ S+SWGVALAH     RLR++FC  L+  AA M+  G
Sbjct: 213 SWGTGIPLALGGMASVSWGVALAHRFSPMRLRLVFCAVLVGAAAAMLVEG 262


>ref|YP_003005075.1| hypothetical protein Dd1591_2772 [Dickeya zeae Ech1591]
 gb|ACT07596.1| protein of unknown function DUF81 [Dickeya zeae Ech1591]
          Length = 254

 Score =  127 bits (318), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 63/107 (58%), Positives = 82/107 (76%)

Query: 1   MGLAAGASAGFFSVGGAIVAVPGLVGLFGMTQTAAQGLGLAMVTPGTLVALWTYASAGHV 60
           +G+A+G  +G F+VGG +V VP LV LFG TQT AQG+ LA+V PG L AL +YA AG+V
Sbjct: 145 LGVASGFMSGIFTVGGGLVVVPALVTLFGFTQTQAQGIALALVVPGALAALASYAQAGNV 204

Query: 61  DWSIGIPLALGGVLSISWGVALAHHLPERRLRMLFCGALIAIAAWMM 107
           DW+ GIPLA+GG+LS+SWGVALAH LP   LR+ FC  L+++A  M+
Sbjct: 205 DWATGIPLAIGGILSVSWGVALAHKLPVVALRLAFCLVLVSVAVVML 251


>ref|ZP_07673878.1| membrane protein [Ralstonia sp. 5_7_47FAA]
 gb|EFP67806.1| membrane protein [Ralstonia sp. 5_7_47FAA]
          Length = 260

 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 64/107 (59%), Positives = 79/107 (73%)

Query: 1   MGLAAGASAGFFSVGGAIVAVPGLVGLFGMTQTAAQGLGLAMVTPGTLVALWTYASAGHV 60
           MG+A+GA +G F+VGG +V VP LV  FGM QT AQG+ LA+V PG+L+AL TYA AGHV
Sbjct: 149 MGVASGAMSGIFTVGGGLVVVPALVTFFGMPQTRAQGMALALVVPGSLIALATYAHAGHV 208

Query: 61  DWSIGIPLALGGVLSISWGVALAHHLPERRLRMLFCGALIAIAAWMM 107
           DW  GIPLA GG+ S+SWGVALA+    RRLR+ FC  L+  A  M+
Sbjct: 209 DWGTGIPLAAGGIASVSWGVALAYRFSARRLRLAFCTVLLGTALMML 255


>ref|ZP_03697157.1| protein of unknown function DUF81 [Lutiella nitroferrum 2002]
 gb|EEG09643.1| protein of unknown function DUF81 [Lutiella nitroferrum 2002]
          Length = 254

 Score =  126 bits (316), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 63/107 (58%), Positives = 79/107 (73%)

Query: 1   MGLAAGASAGFFSVGGAIVAVPGLVGLFGMTQTAAQGLGLAMVTPGTLVALWTYASAGHV 60
           +G+ +GA +G F+VGG +V VP LV LFG TQT AQG+ LA+V PG L AL +Y  AG+V
Sbjct: 145 LGVVSGAMSGIFTVGGGLVVVPALVTLFGFTQTQAQGMALALVVPGALAALLSYTQAGNV 204

Query: 61  DWSIGIPLALGGVLSISWGVALAHHLPERRLRMLFCGALIAIAAWMM 107
           DW +GIPLA+GGVLS+SWGVALAH L   RLR+ FC  L+  A  M+
Sbjct: 205 DWGVGIPLAIGGVLSVSWGVALAHKLSAARLRLAFCAVLVGSAVMML 251