BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0109.p (229 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004752628.1| ATP-dependent DNA ligase [Collimonas fungivo... 325 3e-87 ref|YP_004617878.1| ATP-dependent DNA ligase [Ramlibacter tataou... 315 3e-84 ref|YP_411872.1| ATP-dependent DNA ligase [Nitrosospira multifor... 314 5e-84 ref|YP_316005.1| ATP-dependent DNA ligase [Thiobacillus denitrif... 309 2e-82 gb|EFV87123.1| hypothetical protein HMPREF0005_05774 [Achromobac... 308 3e-82 >ref|YP_004752628.1| ATP-dependent DNA ligase [Collimonas fungivorans Ter331] gb|AEK61805.1| ATP-dependent DNA ligase [Collimonas fungivorans Ter331] Length = 830 Score = 325 bits (833), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 144/226 (63%), Positives = 182/226 (80%) Query: 1 MEGIRALPQAIDPDHPPYLEVAEPLGLLSAAQMNVLEFHTWNGTRTSPTKPDRFIFDLDP 60 M G+R L A+DP HPP LE+A GLLSAAQMNVLEFHTWN +TS KPDR FDLDP Sbjct: 602 MHGVRQLATALDPGHPPLLEIAGAGGLLSAAQMNVLEFHTWNALKTSIMKPDRMTFDLDP 661 Query: 61 GSNVSWAAVQEAATLVRGFLQELGLQSLLKTSGGKGLHILVPLRRQHGWDTVKDFSHAIA 120 G +W +VQ+AA L+R FLQ+L L++++KTSGGKGLH++VP+++QHGWDTVKDFSHAI Sbjct: 662 GEKTTWESVQQAALLLRAFLQQLELEAVIKTSGGKGLHVVVPIKKQHGWDTVKDFSHAIV 721 Query: 121 THLAQTLPERFSSKSGSRNRVGRIFLDYIRNGFGATTACAWSLRARPGMGVSVPVSWDEL 180 HLA LP+RF ++SG+RNRVG+IF+DY+RNGFGATTA AWS+RARPG+GVSVP+ WDEL Sbjct: 722 DHLAGALPDRFVARSGARNRVGKIFVDYLRNGFGATTAAAWSVRARPGLGVSVPIGWDEL 781 Query: 181 ERLQSGSQWNISNIHTRLDRGNAPWSNNSFINQSLTSAMRALGFRP 226 E+++ G+ W +++IH RLD+GNAPW N QSL M+ L F+P Sbjct: 782 EKIKGGAHWTVADIHARLDQGNAPWEANGSRPQSLARPMKILEFKP 827 >ref|YP_004617878.1| ATP-dependent DNA ligase [Ramlibacter tataouinensis TTB310] gb|AEG91859.1| ATP-dependent DNA ligase-like protein [Ramlibacter tataouinensis TTB310] Length = 819 Score = 315 bits (807), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 146/225 (64%), Positives = 174/225 (77%) Query: 1 MEGIRALPQAIDPDHPPYLEVAEPLGLLSAAQMNVLEFHTWNGTRTSPTKPDRFIFDLDP 60 M GI AL A+DPDHPP LEV P GLLSAAQMNV+EFHTWNG +T+ KPDR FDLDP Sbjct: 593 MAGIEALDPALDPDHPPVLEVVRPEGLLSAAQMNVIEFHTWNGVKTAIAKPDRMTFDLDP 652 Query: 61 GSNVSWAAVQEAATLVRGFLQELGLQSLLKTSGGKGLHILVPLRRQHGWDTVKDFSHAIA 120 G V W VQEAA LVR FL ELGL + LKTSGGKGLH++VPL++Q WDTVKDFS AI Sbjct: 653 GEGVQWPQVQEAAQLVRAFLGELGLPAFLKTSGGKGLHVVVPLKKQRDWDTVKDFSQAIV 712 Query: 121 THLAQTLPERFSSKSGSRNRVGRIFLDYIRNGFGATTACAWSLRARPGMGVSVPVSWDEL 180 HLA+TLP+RF +KSG NRVG+IF+DY+RNG+GATT AWS R+RPG+G+SVPV W+EL Sbjct: 713 QHLARTLPDRFVAKSGPSNRVGKIFIDYLRNGYGATTVAAWSARSRPGLGISVPVRWEEL 772 Query: 181 ERLQSGSQWNISNIHTRLDRGNAPWSNNSFINQSLTSAMRALGFR 225 L SG+ W ++ +HTRLD GNAPWS+ L+ AM+ LGF+ Sbjct: 773 GALGSGAHWTVATVHTRLDEGNAPWSDYEAQRAGLSRAMKTLGFQ 817 >ref|YP_411872.1| ATP-dependent DNA ligase [Nitrosospira multiformis ATCC 25196] gb|ABB74480.1| ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module [Nitrosospira multiformis ATCC 25196] Length = 853 Score = 314 bits (805), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 145/226 (64%), Positives = 178/226 (78%) Query: 1 MEGIRALPQAIDPDHPPYLEVAEPLGLLSAAQMNVLEFHTWNGTRTSPTKPDRFIFDLDP 60 M GI L ++DPDHPP LEV+ GLLSA QMNV+EFHTWN T+ KPDR FDLDP Sbjct: 624 MPGIEQLDPSLDPDHPPLLEVSTAEGLLSAVQMNVIEFHTWNATKNVIGKPDRIAFDLDP 683 Query: 61 GSNVSWAAVQEAATLVRGFLQELGLQSLLKTSGGKGLHILVPLRRQHGWDTVKDFSHAIA 120 GS V WA +QE+A LV FL+ELGL+S LKTSGGKGLHI+VP+RR WDTVK FS AI Sbjct: 684 GSGVEWALIQESAQLVNVFLRELGLKSFLKTSGGKGLHIVVPIRRLRDWDTVKGFSQAIV 743 Query: 121 THLAQTLPERFSSKSGSRNRVGRIFLDYIRNGFGATTACAWSLRARPGMGVSVPVSWDEL 180 HLA+T+P RF++KSG RNRVG+IF+DY+RNGFGATT AWS+RARPG+GVSVP++W+EL Sbjct: 744 QHLAKTIPTRFTAKSGPRNRVGKIFIDYLRNGFGATTVSAWSVRARPGLGVSVPLAWEEL 803 Query: 181 ERLQSGSQWNISNIHTRLDRGNAPWSNNSFINQSLTSAMRALGFRP 226 L+S ++W+ SNIH RLD+GN PW++ + NQS+ AM+ LGF P Sbjct: 804 SSLKSSTRWSASNIHERLDKGNDPWADYAETNQSIVPAMKKLGFTP 849 >ref|YP_316005.1| ATP-dependent DNA ligase [Thiobacillus denitrificans ATCC 25259] gb|AAZ98200.1| DNA ligase, ATP-dependent, putative [Thiobacillus denitrificans ATCC 25259] Length = 846 Score = 309 bits (791), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 143/227 (62%), Positives = 174/227 (76%) Query: 1 MEGIRALPQAIDPDHPPYLEVAEPLGLLSAAQMNVLEFHTWNGTRTSPTKPDRFIFDLDP 60 M G++ LP+ +DP H P +EVA GLL+AAQMNV+EFHTWN +T KPDR FDLDP Sbjct: 617 MRGVKTLPRTLDPGHAPLIEVAAAEGLLTAAQMNVIEFHTWNARKTRIDKPDRMTFDLDP 676 Query: 61 GSNVSWAAVQEAATLVRGFLQELGLQSLLKTSGGKGLHILVPLRRQHGWDTVKDFSHAIA 120 G V W VQE+A LVR FL +LGL S LKTSGGKGLHI+VPL+R H WDTVKDFSHAI Sbjct: 677 GEGVGWTTVQESAHLVREFLSQLGLASFLKTSGGKGLHIVVPLKRLHDWDTVKDFSHAIV 736 Query: 121 THLAQTLPERFSSKSGSRNRVGRIFLDYIRNGFGATTACAWSLRARPGMGVSVPVSWDEL 180 HLA+TLP+RF++KSG +NRVG+IF+DY+RNGFGATT AWS+RARPG+GVSVP+ W EL Sbjct: 737 RHLARTLPQRFAAKSGPKNRVGKIFIDYLRNGFGATTVAAWSVRARPGLGVSVPLEWREL 796 Query: 181 ERLQSGSQWNISNIHTRLDRGNAPWSNNSFINQSLTSAMRALGFRPQ 227 + L S +QW + NI +RL+ GNAPW + SLT AM+ LG P+ Sbjct: 797 DALTSAAQWTVPNIDSRLEIGNAPWEAYDASSHSLTRAMKTLGHVPK 843 >gb|EFV87123.1| hypothetical protein HMPREF0005_05774 [Achromobacter xylosoxidans C54] Length = 658 Score = 308 bits (790), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 139/226 (61%), Positives = 180/226 (79%), Gaps = 2/226 (0%) Query: 1 MEGIRALPQAIDPDHPPYLEVAEPLGLLSAAQMNVLEFHTWNGTRTSPTKPDRFIFDLDP 60 M G+R LPQ +DPDHPP +EV P ++SAAQMNV+EFHTWN +++ KPDR +FDLDP Sbjct: 431 MPGVRPLPQELDPDHPPLMEVPTPQAIMSAAQMNVVEFHTWNAVKSAIDKPDRMLFDLDP 490 Query: 61 GSNVSWAAVQEAATLVRGFLQELGLQSLLKTSGGKGLHILVPLRRQHGWDTVKDFSHAIA 120 G V+W ++Q+AA LV L+E+GL+S LKTSGGKGLH++VPLRRQ+ WDTVK FS AI Sbjct: 491 GEGVAWPSMQQAARLVHVMLREIGLRSWLKTSGGKGLHVVVPLRRQYDWDTVKAFSQAIV 550 Query: 121 THLAQTLPERFSSKSGSRNRVGRIFLDYIRNGFGATTACAWSLRARPGMGVSVPVSWDEL 180 HLA+TLP+ F +KSG +NRVGRIF DY+RNGFGATT AWS RARPGMGVSVP++WDEL Sbjct: 551 QHLARTLPQVFVAKSGPKNRVGRIFADYLRNGFGATTVAAWSARARPGMGVSVPLAWDEL 610 Query: 181 ERLQSGSQWNISNIHTRLDRGNAPWSNNSFINQSLTSAMRALGFRP 226 + +++ QW I+NIH RLD G++PW + + Q+L +AM+A+ F+P Sbjct: 611 DEVRASDQWTIANIHERLDVGDSPW--DDYAPQALGAAMKAMDFKP 654