BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0107.p (289 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_02882964.1| cytochrome c oxidase, subunit II [Burkholderi... 309 3e-82 ref|YP_003775719.1| cytochrome c oxidase polypeptide II precurso... 290 1e-76 ref|YP_004231829.1| cytochrome c oxidase subunit II [Burkholderi... 270 2e-70 ref|YP_003909261.1| cytochrome c oxidase subunit II [Burkholderi... 270 2e-70 ref|ZP_02883998.1| cytochrome c oxidase, subunit II [Burkholderi... 269 5e-70 >ref|ZP_02882964.1| cytochrome c oxidase, subunit II [Burkholderia graminis C4D1M] gb|EDT11248.1| cytochrome c oxidase, subunit II [Burkholderia graminis C4D1M] Length = 355 Score = 309 bits (792), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 152/298 (51%), Positives = 198/298 (66%), Gaps = 9/298 (3%) Query: 1 VFFLIVTVFLYALWRAPRSTAITKADIHNQHSKRVHHIAIAW---------ALGLSAAGL 51 VF ++ F +ALWRAPR T T AD+ + V A+A A +S L Sbjct: 58 VFAAVLIAFFWALWRAPRGTRETPADMSTEADSAVGPKAVAEPGLRRAVIVATIVSTVLL 117 Query: 52 GSLFAVDMLTARQLSQLLPDDALRIDLTGHQWWWQATYLNSAGAPDFIVANELQLPVGRT 111 L D+LT R L++L DA++I++T HQWWW+ Y + + FI ANE+ +PVG+ Sbjct: 118 FGLIFADVLTDRALARLSMRDAVQIEVTAHQWWWEIRYNDPQASNVFITANEMHIPVGQP 177 Query: 112 VLINLRSDDVIHSLWIPALHGKLDLIPGRTATLRLRADAPGSYRGQCAEFCGEQHALMAL 171 VL+ L+S DVIHS W+P LHGK DLIPGRTAT+R RAD G YRGQCAEFCG +HALM+ Sbjct: 178 VLVTLKSSDVIHSFWVPNLHGKKDLIPGRTATIRFRADHAGEYRGQCAEFCGYEHALMSF 237 Query: 172 LAIAKPAEQYEAWAVSQRRPAAPPQTESAKHGLRVFLSNGCASCHTIRGTAAAGTLGPDL 231 L IA+ ++Y AW QR+ A PP E G ++FL++ CA CHT++G A LGPDL Sbjct: 238 LVIAETPDKYAAWLAHQRQDAPPPSNELETRGEQIFLTHSCAMCHTVQGIGANAVLGPDL 297 Query: 232 THLAARETLAAGMLPNQRGHLAGWIANARAIKPGVAMPPSTLTPNDLHSLLDFMETLR 289 TH+A+R+TLAAG LPN GHLAGWI +A+ IKPG MPP+ L P++LH+LL +M TLR Sbjct: 298 THVASRQTLAAGTLPNTPGHLAGWIVDAQRIKPGTVMPPNPLAPDELHALLAYMATLR 355 >ref|YP_003775719.1| cytochrome c oxidase polypeptide II precursor transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ63811.1| cytochrome c oxidase polypeptide II precursor (cytochrome aa3 subunit 2) transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 344 Score = 290 bits (743), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 157/291 (53%), Positives = 192/291 (65%), Gaps = 8/291 (2%) Query: 1 VFFLIVTVFLYALWRAPRSTAITKADIHNQHSKRVHHIAIAWALGLSAAGLGSLFAVDML 60 VF L + AL+R R +A A + R+ AI WALGLSA GL +LFA D++ Sbjct: 60 VFLLTLLACAVALFRRRRYSAEAAA-----ATPRLTW-AIGWALGLSATGLLALFAADVV 113 Query: 61 TARQLSQLLPDDALRIDLTGHQWWWQATYLNSAGAPDFIVANELQLPVGRTVLINLRSDD 120 +R L QL AL++ LT QWWWQA Y + F ANEL LPVGR V+I+L S+D Sbjct: 114 ASRALDQLPTAGALQVKLTARQWWWQAQYHDPLTGQGFTTANELHLPVGRAVIIDLDSED 173 Query: 121 VIHSLWIPALHGKLDLIPGRTATLRLRADAPGSYRGQCAEFCGEQHALMALLAIAKPAEQ 180 VIHSLW+P LHGKLDLIPG+ A LRLRAD G+YRGQCAEFCG +HA MALL A+ Sbjct: 174 VIHSLWLPNLHGKLDLIPGKPAQLRLRADQAGTYRGQCAEFCGLEHARMALLVTAESPAD 233 Query: 181 YEAWAVSQ--RRPAAPPQTESAKHGLRVFLSNGCASCHTIRGTAAAGTLGPDLTHLAARE 238 Y WA Q + G VF+ GCA CH IRGT AAG GPDLTHLA+R Sbjct: 234 YARWASGQARAAAPVADAAATVARGRAVFMERGCAQCHAIRGTDAAGQNGPDLTHLASRS 293 Query: 239 TLAAGMLPNQRGHLAGWIANARAIKPGVAMPPSTLTPNDLHSLLDFMETLR 289 TLAAG+ PNQRG LAGWI +AR++K GV MPP+ L P++L++LLD++ETL+ Sbjct: 294 TLAAGIFPNQRGFLAGWITDARSLKTGVIMPPAQLPPDELNALLDYLETLQ 344 >ref|YP_004231829.1| cytochrome c oxidase subunit II [Burkholderia sp. CCGE1001] gb|ADX58769.1| cytochrome c oxidase, subunit II [Burkholderia sp. CCGE1001] Length = 364 Score = 270 bits (690), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 134/291 (46%), Positives = 183/291 (62%), Gaps = 3/291 (1%) Query: 1 VFFLIVTVFLYALWRAPRSTAITKADIH--NQHSKRVHHIAIAWALGLSAAGLGSLFAVD 58 VF ++ L A+ RAPR+ + D+ + KRV + + A +S L L D Sbjct: 75 VFAAVLIALLVAMTRAPRADRDARPDLGPLERPEKRVRRV-VGGAAAVSVVLLFGLLLAD 133 Query: 59 MLTARQLSQLLPDDALRIDLTGHQWWWQATYLNSAGAPDFIVANELQLPVGRTVLINLRS 118 + T R LS+L DA+ +++TGHQWWW+A Y + A F VANEL +PVGR V+I+L++ Sbjct: 134 VATDRALSRLPVADAVHLEMTGHQWWWEARYADDAPGSGFAVANELHIPVGRPVVISLKA 193 Query: 119 DDVIHSLWIPALHGKLDLIPGRTATLRLRADAPGSYRGQCAEFCGEQHALMALLAIAKPA 178 DDVIH+ W+P LHGK D+IPGR +T+ RAD G+YRGQCAEFCG +HALMA +A+P Sbjct: 194 DDVIHTFWVPNLHGKKDMIPGRQSTIEFRADRAGTYRGQCAEFCGLEHALMAFTVVAEPP 253 Query: 179 EQYEAWAVSQRRPAAPPQTESAKHGLRVFLSNGCASCHTIRGTAAAGTLGPDLTHLAARE 238 QY+AW QR PA P G R+F + CA CHT+RGT+A G LGPDLTH+ +R Sbjct: 254 AQYDAWVARQRAPAPQPVNALQAQGERLFTTGNCAGCHTVRGTSAHGVLGPDLTHVMSRP 313 Query: 239 TLAAGMLPNQRGHLAGWIANARAIKPGVAMPPSTLTPNDLHSLLDFMETLR 289 L AG N +L WI ++KPG MP S L+ DL++L+ ++ TL+ Sbjct: 314 MLGAGTFENTPANLESWIKAPGSMKPGTTMPASQLSAQDLNALVAWIGTLQ 364 >ref|YP_003909261.1| cytochrome c oxidase subunit II [Burkholderia sp. CCGE1003] gb|ADN59970.1| cytochrome c oxidase, subunit II [Burkholderia sp. CCGE1003] Length = 360 Score = 270 bits (689), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 133/290 (45%), Positives = 184/290 (63%), Gaps = 1/290 (0%) Query: 1 VFFLIVTVFLYALWRAPRSTAITKADIHN-QHSKRVHHIAIAWALGLSAAGLGSLFAVDM 59 VF ++ L A+ RAPR+ +AD+ +H +R + A +S L L D+ Sbjct: 71 VFAAVLIALLIAMTRAPRAGRDARADLGPLEHPERRVSRVVGGASIVSVLLLFGLLVADI 130 Query: 60 LTARQLSQLLPDDALRIDLTGHQWWWQATYLNSAGAPDFIVANELQLPVGRTVLINLRSD 119 T R LS+L +A+++++TGHQWWW+A Y + F VANEL +PVGR V+I+L++D Sbjct: 131 ATDRALSRLPVANAVQLEMTGHQWWWEARYADDTPGSGFAVANELHVPVGRPVVISLKAD 190 Query: 120 DVIHSLWIPALHGKLDLIPGRTATLRLRADAPGSYRGQCAEFCGEQHALMALLAIAKPAE 179 DVIH+ W+P LHGK D+IPGR +T+ RAD G+YRGQCAEFCG +HALMA +A+PA Sbjct: 191 DVIHTFWVPNLHGKKDMIPGRESTIEFRADRAGTYRGQCAEFCGLEHALMAFTVVAEPAA 250 Query: 180 QYEAWAVSQRRPAAPPQTESAKHGLRVFLSNGCASCHTIRGTAAAGTLGPDLTHLAARET 239 +Y+AW QR PA P G +F + CA CHT+RGT A G LGPDLTH+ +R Sbjct: 251 EYDAWLARQRAPARQPANALQARGEHLFTTGNCAGCHTVRGTLAQGVLGPDLTHVMSRPM 310 Query: 240 LAAGMLPNQRGHLAGWIANARAIKPGVAMPPSTLTPNDLHSLLDFMETLR 289 L AG N +L WI ++KPG MPPS L+ DL++L+ ++ETL+ Sbjct: 311 LGAGTFANTPANLESWIKAPGSMKPGTTMPPSQLSAQDLNALVAWIETLQ 360 >ref|ZP_02883998.1| cytochrome c oxidase, subunit II [Burkholderia graminis C4D1M] gb|EDT10658.1| cytochrome c oxidase, subunit II [Burkholderia graminis C4D1M] Length = 309 Score = 269 bits (687), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 135/291 (46%), Positives = 181/291 (62%), Gaps = 3/291 (1%) Query: 1 VFFLIVTVFLYALWRAPRSTAITKADIH--NQHSKRVHHIAIAWALGLSAAGLGSLFAVD 58 VF ++ L A+ RAPR + D+ + KRV + A ++ S L L D Sbjct: 20 VFAAVLIALLVAMARAPRVSRDANPDLGPLERPEKRVRRVVGAASIA-SVVLLFGLLVAD 78 Query: 59 MLTARQLSQLLPDDALRIDLTGHQWWWQATYLNSAGAPDFIVANELQLPVGRTVLINLRS 118 + T R LS+L DA+ +++TGHQWWW+A Y + F VANEL +PVGR V+I+L++ Sbjct: 79 IATDRALSRLPVADAVHLEMTGHQWWWEARYADDTRGGGFAVANELHIPVGRPVVISLKA 138 Query: 119 DDVIHSLWIPALHGKLDLIPGRTATLRLRADAPGSYRGQCAEFCGEQHALMALLAIAKPA 178 DDVIH+ W+P LHGK D+IPGR +T+ RAD G+YRGQCAEFCG +HALMA +A+P Sbjct: 139 DDVIHTFWVPNLHGKKDMIPGRESTIEFRADRAGTYRGQCAEFCGLEHALMAFTVVAEPP 198 Query: 179 EQYEAWAVSQRRPAAPPQTESAKHGLRVFLSNGCASCHTIRGTAAAGTLGPDLTHLAARE 238 QY+AW QR PA P G R+F + CA CHT+RGT+A G LGPDLTH+ +R Sbjct: 199 AQYDAWLARQRAPAPQPANALQAQGERLFTTGNCAGCHTVRGTSAHGVLGPDLTHVMSRP 258 Query: 239 TLAAGMLPNQRGHLAGWIANARAIKPGVAMPPSTLTPNDLHSLLDFMETLR 289 L AG N +LA WI ++KPG MP S L+ DL +L+ +M TL+ Sbjct: 259 MLGAGTFENTPANLASWIRAPGSMKPGTTMPASQLSAQDLDALVAWMRTLQ 309