BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0105.p (216 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775717.1| cytochrome c oxidase polypeptide II precurso... 283 2e-74 ref|ZP_02882962.1| cytochrome c oxidase subunit III [Burkholderi... 238 6e-61 ref|YP_002942615.1| cytochrome C oxidase subunit I [Variovorax p... 233 1e-59 ref|YP_001860947.1| cytochrome c oxidase, subunit I [Burkholderi... 227 1e-57 ref|YP_003909263.1| cytochrome c oxidase subunit III [Burkholder... 218 5e-55 >ref|YP_003775717.1| cytochrome c oxidase polypeptide II precursor transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ63809.1| cytochrome c oxidase polypeptide II precursor (cytochrome aa3 subunit 2) transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 200 Score = 283 bits (723), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 139/198 (70%), Positives = 169/198 (85%) Query: 19 RQGAALDISALPTFAFGPRSTTWWGTMGMVLVEGTVFALGVMSYFYLRSQSDQWPDGGIP 78 + A LD+S LPTF FGP STTWW T+G++ +E TVFALG+ SYFYLR Q+ WP P Sbjct: 3 QPAATLDVSGLPTFGFGPASTTWWATLGLIFIESTVFALGIASYFYLRGQAPAWPPDSAP 62 Query: 79 PDLMWGTLNTLLMLLSCVPNWWTNEAAKQFDLRKVRIGLCICMVFSLLFLGGRVGEFASL 138 PDL+WG+LNT++MLLSC+PN+ ++AA +FDL++VR+GL +C++FSLLFLGGR+GEFASL Sbjct: 63 PDLLWGSLNTVIMLLSCLPNYLASQAAHRFDLQRVRLGLVLCLLFSLLFLGGRIGEFASL 122 Query: 139 NVKWSDNAYGSVTWMLLGLHTTHLITDTYNTLVLTVLFFTGPVEAKRFVDVSENAAYWYF 198 NV WS NAYGS+TWMLLGLHT HLITDT++TLVLTVLFFTGPVE+KR+VDVSEN YWYF Sbjct: 123 NVNWSHNAYGSITWMLLGLHTVHLITDTFDTLVLTVLFFTGPVESKRYVDVSENGDYWYF 182 Query: 199 VVISWVAIYAVIYGGARL 216 VVISW+AIYAVIY G R Sbjct: 183 VVISWLAIYAVIYWGPRF 200 >ref|ZP_02882962.1| cytochrome c oxidase subunit III [Burkholderia graminis C4D1M] gb|EDT11246.1| cytochrome c oxidase subunit III [Burkholderia graminis C4D1M] Length = 212 Score = 238 bits (606), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 116/214 (54%), Positives = 150/214 (70%), Gaps = 2/214 (0%) Query: 3 MSGDTHHSAKPAKQAVRQGAALDISALPTFAFGPRSTTWWGTMGMVLVEGTVFALGVMSY 62 M+ A +A R+ A+ + LPT+ F RS WWGTMG++++EGTVFA+ VM Y Sbjct: 1 MTTVDERYADSRPRAARK--AIHVGELPTYGFSHRSLMWWGTMGLMVIEGTVFAIAVMMY 58 Query: 63 FYLRSQSDQWPDGGIPPDLMWGTLNTLLMLLSCVPNWWTNEAAKQFDLRKVRIGLCICMV 122 FYLR+ + WP P L+WG++NT ++++S +PN AA++ D R+ L +C+ Sbjct: 59 FYLRTLASVWPMNAPGPGLLWGSVNTAILVVSMLPNHLAKRAAEREDRAASRLWLLVCLA 118 Query: 123 FSLLFLGGRVGEFASLNVKWSDNAYGSVTWMLLGLHTTHLITDTYNTLVLTVLFFTGPVE 182 FSL FLG R EF +LNV W DNAYGSV WML+GLHT HLITDT++T VL VL FTGPVE Sbjct: 119 FSLAFLGVRALEFKALNVTWYDNAYGSVLWMLMGLHTVHLITDTFDTAVLDVLLFTGPVE 178 Query: 183 AKRFVDVSENAAYWYFVVISWVAIYAVIYGGARL 216 KR+VDVSENAAYWYFVV+SW+ IYAV+Y RL Sbjct: 179 GKRYVDVSENAAYWYFVVLSWLPIYAVVYWAPRL 212 >ref|YP_002942615.1| cytochrome C oxidase subunit I [Variovorax paradoxus S110] gb|ACS17349.1| putative cytochrome c oxidase subunit I [Variovorax paradoxus S110] Length = 201 Score = 233 bits (594), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 116/193 (60%), Positives = 145/193 (75%) Query: 24 LDISALPTFAFGPRSTTWWGTMGMVLVEGTVFALGVMSYFYLRSQSDQWPDGGIPPDLMW 83 LD+SALP++AFG RS WWGT G++ +EGT+FA+ + +Y YLRSQ+D WP G PPDL+W Sbjct: 8 LDVSALPSYAFGHRSLMWWGTFGLIAIEGTIFAIAIGAYLYLRSQADSWPLGAPPPDLLW 67 Query: 84 GTLNTLLMLLSCVPNWWTNEAAKQFDLRKVRIGLCICMVFSLLFLGGRVGEFASLNVKWS 143 G+ NTL++L S PN AA+ DL + R L +C++F+L FL R EFA+L+ +W Sbjct: 68 GSANTLILLASIWPNQKAKRAAEARDLVRTRGWLLVCLLFALAFLVLRGFEFAALHTRWD 127 Query: 144 DNAYGSVTWMLLGLHTTHLITDTYNTLVLTVLFFTGPVEAKRFVDVSENAAYWYFVVISW 203 NAYGSV W LLGLHT HL+TDTY+T VL VL FTGP+E +RFVDVSENA YWYFVV SW Sbjct: 128 HNAYGSVVWTLLGLHTVHLLTDTYDTAVLDVLLFTGPMEGQRFVDVSENALYWYFVVFSW 187 Query: 204 VAIYAVIYGGARL 216 + IYAVIYG RL Sbjct: 188 LPIYAVIYGVPRL 200 >ref|YP_001860947.1| cytochrome c oxidase, subunit I [Burkholderia phymatum STM815] gb|ACC73901.1| cytochrome c oxidase, subunit I [Burkholderia phymatum STM815] Length = 874 Score = 227 bits (578), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 114/220 (51%), Positives = 144/220 (65%), Gaps = 7/220 (3%) Query: 4 SGDTHHSAKPAKQAVRQGAALD-------ISALPTFAFGPRSTTWWGTMGMVLVEGTVFA 56 +G + P + R G++LD + ALP+F FG RS WW T G++L+EGTVFA Sbjct: 653 AGRAQKTRVPHAASSRDGSSLDAQPSTLDVRALPSFGFGARSLMWWATAGLMLIEGTVFA 712 Query: 57 LGVMSYFYLRSQSDQWPDGGIPPDLMWGTLNTLLMLLSCVPNWWTNEAAKQFDLRKVRIG 116 L V YFYLR+ + WP PP L+WG+LNT +++LS VPN AA Q + R+ Sbjct: 713 LAVAVYFYLRTVNASWPMHAPPPSLLWGSLNTAVLILSVVPNELARRAANQGNRELARLW 772 Query: 117 LCICMVFSLLFLGGRVGEFASLNVKWSDNAYGSVTWMLLGLHTTHLITDTYNTLVLTVLF 176 L +C+ F+L+FL R EF +LNV W NAYGS+ W LL LHTTHLITDT +T VL VL Sbjct: 773 LAVCVGFALIFLVLRGFEFTALNVMWYANAYGSIVWTLLALHTTHLITDTVDTAVLAVLL 832 Query: 177 FTGPVEAKRFVDVSENAAYWYFVVISWVAIYAVIYGGARL 216 +TGP E KR VD SENA YWYFVV+SW+ IYAVIY R+ Sbjct: 833 YTGPYEGKRLVDTSENAFYWYFVVLSWLPIYAVIYFAPRM 872 >ref|YP_003909263.1| cytochrome c oxidase subunit III [Burkholderia sp. CCGE1003] gb|ADN59972.1| cytochrome c oxidase subunit III [Burkholderia sp. CCGE1003] Length = 216 Score = 218 bits (555), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 120/215 (55%), Positives = 150/215 (69%), Gaps = 5/215 (2%) Query: 7 THHSAKPAKQAVRQGAA-----LDISALPTFAFGPRSTTWWGTMGMVLVEGTVFALGVMS 61 T P + AVR+ A LD+ LP+F FG RS WWGTM ++L+EGTVFA+ M Sbjct: 2 TELRKVPVEAAVREDGAAPALMLDVRHLPSFGFGHRSLMWWGTMCLMLIEGTVFAIAAMM 61 Query: 62 YFYLRSQSDQWPDGGIPPDLMWGTLNTLLMLLSCVPNWWTNEAAKQFDLRKVRIGLCICM 121 YFYLRS + +WP PP+L+WGT NT+++L+S PN +AA + + R+ L IC+ Sbjct: 62 YFYLRSLTARWPLNAAPPELLWGTANTVILLVSMWPNQLAKQAADRQQRARARLWLIICL 121 Query: 122 VFSLLFLGGRVGEFASLNVKWSDNAYGSVTWMLLGLHTTHLITDTYNTLVLTVLFFTGPV 181 +F+++FL R EFA+LNV W NAYGSV W+LLGLHTTHLITD +T VL VL FTGP Sbjct: 122 LFAVVFLVLRGFEFAALNVSWYTNAYGSVVWLLLGLHTTHLITDAIDTAVLGVLLFTGPF 181 Query: 182 EAKRFVDVSENAAYWYFVVISWVAIYAVIYGGARL 216 E KRFVDVSENA YWYFVV+SW+ IYAVIY RL Sbjct: 182 EGKRFVDVSENAMYWYFVVLSWLPIYAVIYLAPRL 216