BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0087.p (383 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775205.1| branched-chain amino acid ABC transporter pe... 722 0.0 ref|YP_004752460.1| ABC branched chain amino acid family transpo... 638 0.0 ref|YP_523095.1| extracellular ligand-binding receptor [Rhodofer... 572 e-161 ref|YP_001894558.1| branched-chain amino acid ABC transporter pe... 566 e-159 ref|YP_557335.1| branched chain amino acid ABC transporter perip... 564 e-158 >ref|YP_003775205.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ63297.1| ABC-type branched-chain amino acid transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 383 Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/383 (90%), Positives = 371/383 (96%) Query: 1 MTYKTQALVAAALLSLSLSSQAADPIKIGVSGPFTGGSAPMGVSMRDGVKLAVAEINAAG 60 MTYKTQA VAAAL+SL+L+SQAADPIKIGVSGP+TGGSAPMGVSMRDGVKLAVAEINAAG Sbjct: 1 MTYKTQAFVAAALMSLALTSQAADPIKIGVSGPYTGGSAPMGVSMRDGVKLAVAEINAAG 60 Query: 61 GLLGRQVQLVERDDEAKNERGVQIAQEMINKEKVVATVGYANTGVALASQRFYQEAKIPV 120 GLLGRQ+QL+ERDDEAKNERGVQIAQE+INKEKVVATVG+ NTGVALASQRFYQEAKIPV Sbjct: 61 GLLGRQIQLIERDDEAKNERGVQIAQELINKEKVVATVGFINTGVALASQRFYQEAKIPV 120 Query: 121 ITNVATGSVVTKQFEKDKDNYIFRTSANDAIQAKMLADEAIDKQKYTKVAILADSTNYGQ 180 I NVATG+V+TKQFEK+KDNY+FRTSA D IQAKM+ADEA+DKQK+TKVAILADSTNYGQ Sbjct: 121 INNVATGTVITKQFEKEKDNYVFRTSAADKIQAKMIADEAVDKQKFTKVAILADSTNYGQ 180 Query: 181 LGREDLEKALAAKKITPVAIEKYNLKDVDMTAQLLKSKQGGAQVVLTYGIGPELAQIANG 240 LGREDLEK LA KK+TPVA+EKYN+KDVDMTAQLLKSKQGGAQ VLTYGIGPELAQIANG Sbjct: 181 LGREDLEKVLADKKVTPVAVEKYNIKDVDMTAQLLKSKQGGAQAVLTYGIGPELAQIANG 240 Query: 241 MEKLNWHVPIIGSWPLSMGNFIDNSGKNGNGARMPQTFIQDGDTPKRKSFIEAYQKAYKV 300 MEKLNWHVPIIGSWPLSMGNFIDNSGKNGNGARMPQTFIQDG+TPKRK+FIEAYQKAYKV Sbjct: 241 MEKLNWHVPIIGSWPLSMGNFIDNSGKNGNGARMPQTFIQDGNTPKRKAFIEAYQKAYKV 300 Query: 301 DRMPSAVSAAQGYDSILLLAAAIKQAGSTDGEKVRGALESLNTKIEGVVTTYNKPFTRDD 360 DRMPSAVSAAQGYDSILLLAAAIKQAG+TDG+KVR ALE+LNTK+EGVVTTY+KPFT DD Sbjct: 301 DRMPSAVSAAQGYDSILLLAAAIKQAGTTDGDKVRAALENLNTKVEGVVTTYDKPFTHDD 360 Query: 361 HEAIKANMVVMGEVKNGRVVLGK 383 HEAIK MVVMGEVKNGRV+LGK Sbjct: 361 HEAIKPAMVVMGEVKNGRVILGK 383 >ref|YP_004752460.1| ABC branched chain amino acid family transporter, periplasmic ligand binding protein [Collimonas fungivorans Ter331] gb|AEK61637.1| ABC branched chain amino acid family transporter, periplasmic ligand binding protein [Collimonas fungivorans Ter331] Length = 385 Score = 638 bits (1645), Expect = 0.0, Method: Compositional matrix adjust. Identities = 309/385 (80%), Positives = 348/385 (90%), Gaps = 2/385 (0%) Query: 1 MTYKTQALVAAALLSLSLSSQAADPIKIGVSGPFTGGSAPMGVSMRDGVKLAVAEINAAG 60 M +A VA AL+S +L++ AA+PIKIGV+GPFTGGSAPMGVSMRDGVKLAVA+INA G Sbjct: 1 MNTIIKACVATALVSWTLAAGAAEPIKIGVTGPFTGGSAPMGVSMRDGVKLAVADINAKG 60 Query: 61 GLLGRQVQLVERDDEAKNERGVQIAQEMINKEKVVATVGYANTGVALASQRFYQEAKIPV 120 G+LGRQ+QLVERDDEAKNERGVQ+AQE+INKEKVV TVG+ NTGVALASQRFYQEAKIPV Sbjct: 61 GVLGRQLQLVERDDEAKNERGVQVAQELINKEKVVGTVGFINTGVALASQRFYQEAKIPV 120 Query: 121 ITNVATGSVVTKQF--EKDKDNYIFRTSANDAIQAKMLADEAIDKQKYTKVAILADSTNY 178 + NVATGS+VTKQF ++KDNY+FR +AND IQ+ M+ DEA+ +QK+TKVAILADSTNY Sbjct: 121 MNNVATGSIVTKQFVGPENKDNYVFRNAANDTIQSAMIVDEAVVRQKHTKVAILADSTNY 180 Query: 179 GQLGREDLEKALAAKKITPVAIEKYNLKDVDMTAQLLKSKQGGAQVVLTYGIGPELAQIA 238 GQLGREDLE+ LAA+ I PVA+EKYNLKDVDMTAQLLK+KQGGA+VVLTYGIGPELAQIA Sbjct: 181 GQLGREDLERTLAARGIKPVAVEKYNLKDVDMTAQLLKAKQGGAEVVLTYGIGPELAQIA 240 Query: 239 NGMEKLNWHVPIIGSWPLSMGNFIDNSGKNGNGARMPQTFIQDGDTPKRKSFIEAYQKAY 298 NGMEKLNW VPIIGSW LSMGNFIDN+GKNG+GARMPQTFIQD T KRK+FIEAYQKAY Sbjct: 241 NGMEKLNWKVPIIGSWTLSMGNFIDNAGKNGDGARMPQTFIQDATTAKRKAFIEAYQKAY 300 Query: 299 KVDRMPSAVSAAQGYDSILLLAAAIKQAGSTDGEKVRGALESLNTKIEGVVTTYNKPFTR 358 K+DRMPSAVSAAQGYDS+ LLAAAIKQAGSTDG KVR ALE+LN +EGVVTTY KP++ Sbjct: 301 KIDRMPSAVSAAQGYDSVYLLAAAIKQAGSTDGVKVREALENLNGTVEGVVTTYTKPYSH 360 Query: 359 DDHEAIKANMVVMGEVKNGRVVLGK 383 DDHEAIK NMVV+GEVKNGRVVL K Sbjct: 361 DDHEAIKPNMVVIGEVKNGRVVLAK 385 >ref|YP_523095.1| extracellular ligand-binding receptor [Rhodoferax ferrireducens T118] gb|ABD69564.1| Extracellular ligand-binding receptor [Rhodoferax ferrireducens T118] Length = 399 Score = 572 bits (1473), Expect = e-161, Method: Compositional matrix adjust. Identities = 278/378 (73%), Positives = 322/378 (85%), Gaps = 1/378 (0%) Query: 3 YKTQALVAAALLSLSLSSQAADPIKIGVSGPFTGGSAPMGVSMRDGVKLAVAEINAAGGL 62 ++T AL + AL S+S AAD IKIG+ GP TGGS+PMGVSMRDG KLAV EINA GGL Sbjct: 4 FRTIALSSVALAVASMS-MAADNIKIGLQGPLTGGSSPMGVSMRDGAKLAVTEINAHGGL 62 Query: 63 LGRQVQLVERDDEAKNERGVQIAQEMINKEKVVATVGYANTGVALASQRFYQEAKIPVIT 122 LGR+++++ERDDEAKNERGVQIAQE+INKEKVVATVGY N+GVALASQRFYQEAKIPV+ Sbjct: 63 LGRKIEMIERDDEAKNERGVQIAQELINKEKVVATVGYINSGVALASQRFYQEAKIPVMN 122 Query: 123 NVATGSVVTKQFEKDKDNYIFRTSANDAIQAKMLADEAIDKQKYTKVAILADSTNYGQLG 182 NVAT + +T+QF NY+FR SAND IQ+ ++ +E I ++KYTKVAILADSTNYGQLG Sbjct: 123 NVATATTITQQFADQPQNYVFRNSANDTIQSTLIVEEVIGRRKYTKVAILADSTNYGQLG 182 Query: 183 REDLEKALAAKKITPVAIEKYNLKDVDMTAQLLKSKQGGAQVVLTYGIGPELAQIANGME 242 R DLEKALAAK ITPVA EKYN+KDVDMT QLLK+K+ GAQVV+TYGIGPELAQIANGM Sbjct: 183 RADLEKALAAKGITPVATEKYNIKDVDMTPQLLKAKEAGAQVVITYGIGPELAQIANGMI 242 Query: 243 KLNWHVPIIGSWPLSMGNFIDNSGKNGNGARMPQTFIQDGDTPKRKSFIEAYQKAYKVDR 302 KL W VP++GSW LSMGNFIDN+GKN + A MPQTFIQ+G+TPKRKSFI+AYQK YKV R Sbjct: 243 KLGWKVPMMGSWTLSMGNFIDNAGKNADDALMPQTFIQEGNTPKRKSFIDAYQKTYKVTR 302 Query: 303 MPSAVSAAQGYDSILLLAAAIKQAGSTDGEKVRGALESLNTKIEGVVTTYNKPFTRDDHE 362 +PS VSAAQGYDSI LLAAAIKQAGST+G KV ALE L T +EGVVTTYNKPF++ DHE Sbjct: 303 IPSPVSAAQGYDSIYLLAAAIKQAGSTEGPKVLAALEDLKTPVEGVVTTYNKPFSKADHE 362 Query: 363 AIKANMVVMGEVKNGRVV 380 AI NM V+G+V++G VV Sbjct: 363 AITLNMPVIGKVQDGHVV 380 >ref|YP_001894558.1| branched-chain amino acid ABC transporter periplasmic protein [Burkholderia phytofirmans PsJN] gb|ACD15334.1| Extracellular ligand-binding receptor [Burkholderia phytofirmans PsJN] Length = 405 Score = 567 bits (1460), Expect = e-159, Method: Compositional matrix adjust. Identities = 279/383 (72%), Positives = 322/383 (84%), Gaps = 3/383 (0%) Query: 1 MTYKTQALVAA-ALLSLSLSSQAADPIKIGVSGPFTGGSAPMGVSMRDGVKLAVAEINAA 59 M + +++V A AL +L+ S AADPIKIGV GPFTGGS+ MGVSMRDGV+LA AEIN A Sbjct: 1 MGIRLKSVVGALALCALANVSYAADPIKIGVDGPFTGGSSSMGVSMRDGVRLATAEINKA 60 Query: 60 GGLLGRQVQLVERDDEAKNERGVQIAQEMINKEKVVATVGYANTGVALASQRFYQEAKIP 119 GG+LGRQ+ LVERDDEAKNERGVQIAQE+INKEKVVA VGY NTGVALASQRF+QEAKIP Sbjct: 61 GGVLGRQIVLVERDDEAKNERGVQIAQELINKEKVVAVVGYINTGVALASQRFFQEAKIP 120 Query: 120 VITNVATGSVVTKQFEKDKDNYIFRTSANDAIQAKMLADEAIDKQKYTKVAILADSTNYG 179 V NVATGS+VTKQF DNY+FR +A D IQA M+ +EA+ K+ + KVAILADSTNYG Sbjct: 121 VFNNVATGSIVTKQFTDQPDNYVFRNAAADRIQAPMIVEEAVTKRGFKKVAILADSTNYG 180 Query: 180 QLGREDLEKALAAKKITPVAIEKYNLKDVDMTAQLLKSKQGGAQVVLTYGIGPELAQIAN 239 QLGREDLEKALAAK + PVA+EK+N+KDVDMTAQLLK+K+ GA+ VLTYGIGPELAQIAN Sbjct: 181 QLGREDLEKALAAKGVKPVAVEKFNIKDVDMTAQLLKAKEAGAEAVLTYGIGPELAQIAN 240 Query: 240 GMEKLNWHVPIIGSWPLSMGNFIDNSGKNGNGARMPQTFIQDGDTPKRKSFIEAYQKAYK 299 GM KL W VP+IGSW LSM N+IDN+ NG GARMPQTFIQ+ +TPKRK+FI+AY K +K Sbjct: 241 GMAKLGWKVPLIGSWTLSMANYIDNASTNGEGARMPQTFIQEANTPKRKTFIDAYLKEFK 300 Query: 300 V--DRMPSAVSAAQGYDSILLLAAAIKQAGSTDGEKVRGALESLNTKIEGVVTTYNKPFT 357 +R+ S VSAAQGYDS+ LLAAAI QAGSTDG KVR ALE+LNTK+EGVV Y+KPFT Sbjct: 301 PKNNRIDSPVSAAQGYDSVYLLAAAITQAGSTDGPKVRAALENLNTKVEGVVMVYDKPFT 360 Query: 358 RDDHEAIKANMVVMGEVKNGRVV 380 DDHEAI N+ V+GEVK GRVV Sbjct: 361 HDDHEAISPNVPVVGEVKGGRVV 383 >ref|YP_557335.1| branched chain amino acid ABC transporter periplasmic ligand-binding protein [Burkholderia xenovorans LB400] ref|ZP_06844789.1| Extracellular ligand-binding receptor [Burkholderia sp. Ch1-1] gb|ABE29283.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Burkholderia xenovorans LB400] gb|EFG67553.1| Extracellular ligand-binding receptor [Burkholderia sp. Ch1-1] Length = 405 Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust. Identities = 279/383 (72%), Positives = 321/383 (83%), Gaps = 3/383 (0%) Query: 1 MTYKTQALVAA-ALLSLSLSSQAADPIKIGVSGPFTGGSAPMGVSMRDGVKLAVAEINAA 59 M + +++V A AL +L+ AADPIKIGV GPFTGGS+ MGVSMRDGV+LA AEIN A Sbjct: 1 MGIRLKSVVGALALCALANVGYAADPIKIGVDGPFTGGSSSMGVSMRDGVRLATAEINKA 60 Query: 60 GGLLGRQVQLVERDDEAKNERGVQIAQEMINKEKVVATVGYANTGVALASQRFYQEAKIP 119 GG+LGRQ+ LVERDDEAKNERGVQIAQE+INKEKVVA VGY NTGVALASQRF+QEAKIP Sbjct: 61 GGVLGRQIVLVERDDEAKNERGVQIAQELINKEKVVAVVGYINTGVALASQRFFQEAKIP 120 Query: 120 VITNVATGSVVTKQFEKDKDNYIFRTSANDAIQAKMLADEAIDKQKYTKVAILADSTNYG 179 V NVATGSVVTKQF DNY+FR +A D IQA M+ +EA+ ++ + KVAILADSTNYG Sbjct: 121 VFNNVATGSVVTKQFTDQPDNYVFRNAAADRIQAPMIVEEAVTRRGFRKVAILADSTNYG 180 Query: 180 QLGREDLEKALAAKKITPVAIEKYNLKDVDMTAQLLKSKQGGAQVVLTYGIGPELAQIAN 239 QLGREDLEKALAAK + PVA+EK+N+KDVDMTAQLLK+K+ GA+ VLTYGIGPELAQIAN Sbjct: 181 QLGREDLEKALAAKGVKPVAVEKFNIKDVDMTAQLLKAKEAGAEAVLTYGIGPELAQIAN 240 Query: 240 GMEKLNWHVPIIGSWPLSMGNFIDNSGKNGNGARMPQTFIQDGDTPKRKSFIEAYQKAYK 299 GM KL W VP+IGSW LSM N+IDN+ NG GARMPQTFIQ+ +TPKRK+FI+AY K +K Sbjct: 241 GMAKLGWKVPLIGSWTLSMANYIDNASTNGEGARMPQTFIQEANTPKRKAFIDAYLKEFK 300 Query: 300 V--DRMPSAVSAAQGYDSILLLAAAIKQAGSTDGEKVRGALESLNTKIEGVVTTYNKPFT 357 +R+ S VSAAQGYDSI LLAAAI QAGSTDG KVR ALE+LNTK+EGVV Y+KPFT Sbjct: 301 PKNNRIDSPVSAAQGYDSIYLLAAAITQAGSTDGPKVRAALENLNTKVEGVVMVYDKPFT 360 Query: 358 RDDHEAIKANMVVMGEVKNGRVV 380 DDHEAI N+ V+GEVK GRVV Sbjct: 361 HDDHEAISPNVPVVGEVKGGRVV 383