BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0082.p (291 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_367004.1| IclR family transcriptional regulator [Burkhold... 198 8e-49 gb|EGD01471.1| IclR family transcriptional regulator [Burkholder... 190 2e-46 ref|YP_158053.1| transcriptional regulator [Aromatoleum aromatic... 179 4e-43 ref|NP_887166.1| IclR family transcriptional regulator [Bordetel... 176 3e-42 ref|YP_004387426.1| IclR family transcriptional regulator [Alicy... 176 3e-42 >ref|YP_367004.1| IclR family transcriptional regulator [Burkholderia sp. 383] gb|ABB06360.1| transcriptional regulator, IclR family [Burkholderia sp. 383] Length = 289 Score = 198 bits (504), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 106/281 (37%), Positives = 163/281 (58%), Gaps = 6/281 (2%) Query: 6 RLQGTGNGQWADVKVVLRAPGNGSPRDVPINANDIIAPIERGLAILSVFGPADQWLGNQE 65 R+ + W D + G+G +D + ++ P+ R LAIL+ F P WLGNQE Sbjct: 11 RMSAQEDANWHDASI-----GDGESQDGGHASRAMVVPLARSLAILAAFSPHAPWLGNQE 65 Query: 66 ISAKTGIPKATVTRLTQTLTDQGFLNHSTRLRKYGLAAAVLGLGYVTMDNSHTAALARSH 125 + ++TGIP TV+R+ ++L G+L++S + RKY LAA VL LGY + +S+ LAR Sbjct: 66 LVSETGIPAPTVSRMVRSLVALGYLHYSPQRRKYRLAAPVLSLGYAAIAHSNVQLLARLE 125 Query: 126 MQKLADDCGVFVSLVGRDGLDVSLLENCHSTSSLATLGVNVGARFPIAANPFGLALLSGL 185 MQ A+ +V L RD LDV +LE C + L ++ G R IA++P G ALL+ L Sbjct: 126 MQAFANANETYVMLGTRDRLDVIVLETCAGKPASVDLKLHAGTRLRIASSPMGWALLAAL 185 Query: 186 PLAERNYLLDHIRLRYQQEYRVNLRSRVADAVAQVSQKGYCVSICELGSEITVAAAPLNI 245 P ER YLL +I + +++ NLR R+++ ++QV GYC+S+ E ++T+ A PL + Sbjct: 186 PELERFYLLGNIERKTGRDW-PNLRRRISEGISQVHNVGYCMSLGEWEPDLTILAVPLVV 244 Query: 246 PDRPPMAIGCAGPARLITREKLREEIGPRLVELVTRLQDHA 286 D P+ + C G + + R ++ E+GPRLV LQ+ A Sbjct: 245 QDHTPLVLACIGRSARLGRARVERELGPRLVAAAQHLQEQA 285 >gb|EGD01471.1| IclR family transcriptional regulator [Burkholderia sp. TJI49] Length = 250 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 100/250 (40%), Positives = 151/250 (60%), Gaps = 1/250 (0%) Query: 40 IIAPIERGLAILSVFGPADQWLGNQEISAKTGIPKATVTRLTQTLTDQGFLNHSTRLRKY 99 ++ P+ R LAIL+ F P + WLGNQE+ +TGIP TV+R+ ++L G+L++S + RKY Sbjct: 1 MVVPLARSLAILAAFSPHEPWLGNQELVIETGIPAPTVSRMARSLVALGYLHYSPQRRKY 60 Query: 100 GLAAAVLGLGYVTMDNSHTAALARSHMQKLADDCGVFVSLVGRDGLDVSLLENCHSTSSL 159 LAA VL LGY + +S+ LAR MQ A+ +V L RD LDV +LE C + Sbjct: 61 RLAAPVLSLGYAAIAHSNVQLLARLEMQAFANANETYVMLGTRDRLDVIVLETCAGKPAS 120 Query: 160 ATLGVNVGARFPIAANPFGLALLSGLPLAERNYLLDHIRLRYQQEYRVNLRSRVADAVAQ 219 L + G R IA++P G ALL+ LP ER YLL +I + +++ LR R+++ ++Q Sbjct: 121 VDLKLYAGTRLRIASSPMGWALLAALPELERFYLLGNIERKTGRDWP-TLRRRISEGISQ 179 Query: 220 VSQKGYCVSICELGSEITVAAAPLNIPDRPPMAIGCAGPARLITREKLREEIGPRLVELV 279 V GYC+S+ E ++T+ A PL + D P+ + C G + + R ++ E+GPRLV Sbjct: 180 VHNVGYCMSLGEWEPDLTILAVPLVVQDHTPLVLACVGRSARLGRARVERELGPRLVAAA 239 Query: 280 TRLQDHAGLT 289 LQ+ A +T Sbjct: 240 QHLQEQAVVT 249 >ref|YP_158053.1| transcriptional regulator [Aromatoleum aromaticum EbN1] emb|CAI07152.1| Transcriptional regulator [Aromatoleum aromaticum EbN1] Length = 285 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 99/264 (37%), Positives = 157/264 (59%), Gaps = 10/264 (3%) Query: 32 DVPINAND-------IIAPIERGLAILSVFGPADQWLGNQEISAKTGIPKATVTRLTQTL 84 D+ + A+D + + RGL +L F P D L N E++ +TG+PK T++RLT TL Sbjct: 22 DIQVFADDEESKDRQFVNALARGLELLRCFRPGDTELSNAELARRTGLPKPTISRLTHTL 81 Query: 85 TDQGFLNHSTRLRKYGLAAAVLGLGYVTMDNSHTAALARSHMQKLADDCGVFVSLVGRDG 144 T G+L S Y LAA VL LGY + N +AR +M++L++ V VS+ RD Sbjct: 82 TKLGYLGFSESRGTYRLAAGVLALGYALLSNLDVRKVARPYMEELSEYAQVSVSIGARDR 141 Query: 145 LDVSLLENCHSTSSLATLGVNVGARFPIAANPFGLALLSGLPLAERNYLLDHIRLRYQQE 204 L + +E+C S++++ TL ++VG+R P+A + G ALL GLP ER+YL+DHIRLR ++ Sbjct: 142 LSIVYIESCRSSANV-TLRLDVGSRIPLATSAVGRALLCGLPQGERDYLMDHIRLRDEEN 200 Query: 205 YRVNLRSRVADAVAQVSQKGYCVSICELGSEITVAAAPLN-IPDRPPMAIGCAGPARLIT 263 + +++ + A+ ++G+ VS + ++ P+ + MA C GPA L++ Sbjct: 201 W-PRVKAGIEQALRDYHERGFVVSAGDWQKDVHAVGVPMTGVDGERAMAFNCGGPAFLLS 259 Query: 264 REKLREEIGPRLVELVTRLQDHAG 287 RE+L E+GPRLVELV +++ G Sbjct: 260 RERLIGEVGPRLVELVHKVEADLG 283 >ref|NP_887166.1| IclR family transcriptional regulator [Bordetella bronchiseptica RB50] emb|CAE31116.1| IclR family regulatory protein [Bordetella bronchiseptica RB50] Length = 283 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 94/244 (38%), Positives = 141/244 (57%), Gaps = 1/244 (0%) Query: 40 IIAPIERGLAILSVFGPADQWLGNQEISAKTGIPKATVTRLTQTLTDQGFLNHSTRLRKY 99 ++ P+ R L ++S F P ++WLGN +++ +TG+P +TV+R+ Q+L G+L H RKY Sbjct: 33 VVTPLVRALVLISAFSPQERWLGNGQLAQRTGLPPSTVSRIAQSLVHLGYLLHDEAERKY 92 Query: 100 GLAAAVLGLGYVTMDNSHTAALARSHMQKLADDCGVFVSLVGRDGLDVSLLENCHSTSSL 159 LA AVLGLGY + +S LA M A V V L RD LD+ +LE S Sbjct: 93 RLAPAVLGLGYAAIAHSAIQGLAGERMAAFARQHKVHVCLAARDRLDLVVLECRRSLECP 152 Query: 160 ATLGVNVGARFPIAANPFGLALLSGLPLAERNYLLDHIRLRYQQEYRVNLRSRVADAVAQ 219 L ++VG R IA +P G ++L+ LP ER YLLD++ R +++ LR RV + +AQ Sbjct: 153 VALPLHVGMRVGIAQSPMGWSMLAALPELERCYLLDNVERRMARDWS-RLRRRVWEGMAQ 211 Query: 220 VSQKGYCVSICELGSEITVAAAPLNIPDRPPMAIGCAGPARLITREKLREEIGPRLVELV 279 V + GYC SI E E+ A P+ + P + C G ++ +TR ++ E+GPRL+ + Sbjct: 212 VGETGYCTSIGEWDPELGALATPVLLEGSSPFVLACIGTSQTMTRARVARELGPRLLAMR 271 Query: 280 TRLQ 283 LQ Sbjct: 272 EALQ 275 >ref|YP_004387426.1| IclR family transcriptional regulator [Alicycliphilus denitrificans K601] gb|AEB83910.1| transcriptional regulator, IclR family [Alicycliphilus denitrificans K601] Length = 282 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 95/245 (38%), Positives = 143/245 (58%), Gaps = 1/245 (0%) Query: 40 IIAPIERGLAILSVFGPADQWLGNQEISAKTGIPKATVTRLTQTLTDQGFLNHSTRLRKY 99 ++ P+ R L I+S F P ++WLG +++ +TG+P +TVTR+ Q+L G+L + RKY Sbjct: 32 VVTPLVRALVIISAFAPQERWLGIGQLAQRTGLPPSTVTRIAQSLVHLGYLLYDGDERKY 91 Query: 100 GLAAAVLGLGYVTMDNSHTAALARSHMQKLADDCGVFVSLVGRDGLDVSLLENCHSTSSL 159 L+ AVLGLGY + +S LA M A V V L RD LD+ +LE S S Sbjct: 92 RLSPAVLGLGYAAIAHSAIQGLAGEPMAAFARQHKVHVCLAARDRLDLVVLECRRSVESP 151 Query: 160 ATLGVNVGARFPIAANPFGLALLSGLPLAERNYLLDHIRLRYQQEYRVNLRSRVADAVAQ 219 L ++VG R +A +P G ALL+ LP ER+YLL+++ R +E+ LR RV + AQ Sbjct: 152 IALPLHVGMRLGLAQSPMGWALLAALPELERSYLLENVERRMSREWS-RLRRRVCEGTAQ 210 Query: 220 VSQKGYCVSICELGSEITVAAAPLNIPDRPPMAIGCAGPARLITREKLREEIGPRLVELV 279 V +KGYC +I E ++ AAP+ + P + C G ++ +TR ++ E+GPRL+ + Sbjct: 211 VYEKGYCAAIGEWEPDLGTLAAPVLLEGNAPFVLACIGASQGMTRARVERELGPRLLAMA 270 Query: 280 TRLQD 284 LQ Sbjct: 271 GELQS 275