BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0081.p (286 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_371973.1| IclR family transcriptional regulator [Burkhold... 207 2e-51 ref|YP_367003.1| IclR family transcriptional regulator [Burkhold... 198 9e-49 gb|EGD05040.1| IclR family transcriptional regulator [Burkholder... 195 6e-48 ref|NP_882948.1| IclR family regulatory protein [Bordetella para... 191 1e-46 ref|YP_004127556.1| regulatory protein iclr [Alicycliphilus deni... 190 3e-46 >ref|YP_371973.1| IclR family transcriptional regulator [Burkholderia sp. 383] gb|ABB11329.1| transcriptional regulator, IclR family [Burkholderia sp. 383] Length = 270 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 113/267 (42%), Positives = 164/267 (61%), Gaps = 3/267 (1%) Query: 16 TEDASDASTEKAEKAGGTHTLERALTVLKAFGGYPGPVTNAELVRRTGFSKASVSRITAT 75 T ++ A T E A T TL+R L +L+AF P+TN EL +RTG S+++VSR+T+T Sbjct: 2 TNPSNHAETATPEPAQVTLTLDRGLQLLRAFHAERAPLTNGELAQRTGMSRSAVSRLTST 61 Query: 76 LVALGYLDRASDGLRYQIGMQGLVLGHNYRANNPVKLYARPIMQEYADEHDMSVALATGD 135 L+ LGY+ R + G R+++ +GH Y NPV A+P+MQ+ AD D+SVALAT D Sbjct: 62 LIQLGYIRRVAGGTRFELATGVFGIGHAYLETNPVTRLAQPLMQQLADRLDVSVALATAD 121 Query: 136 GMDTLYIEYCKSPRIATLRMGVGMRMPMELTSIGRTYLWA-QRPQERERLLSDIRRRGDD 194 G+D LYI + S IATLR+GVG +PM LT+IGR +LW PQ +E + + G Sbjct: 122 GLDMLYIAHRTSSGIATLRLGVGSLLPMGLTAIGRAWLWGLPDPQRQEYVARLLEAAGAQ 181 Query: 195 KQAANSMLRIEQAFDHLEKFGYCVAMGEFQRDSFGISVPVYLGNPAIPMALNCGGILPAP 254 + A + I+ AF+ L + G C++ GEFQR+++GI++PV +G+ A PM+L+CG I Sbjct: 182 RDAMRAG--IDHAFEDLRENGVCLSYGEFQRNAYGIALPVRVGDTATPMSLSCGAIKAHA 239 Query: 255 SDEHIHNVLVPRLVQTAVRLAAATADI 281 + I +VP L Q A L D+ Sbjct: 240 DIDTIRQRIVPALKQAARDLEHVLRDV 266 >ref|YP_367003.1| IclR family transcriptional regulator [Burkholderia sp. 383] gb|ABB06359.1| transcriptional regulator, IclR family [Burkholderia sp. 383] Length = 262 Score = 198 bits (503), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 107/256 (41%), Positives = 156/256 (60%), Gaps = 3/256 (1%) Query: 28 EKAGGTHTLERALTVLKAFGGYPGPVTNAELVRRTGFSKASVSRITATLVALGYLDRASD 87 ++ G T T+ER L VL AF P++NAELVRRTG KA+VSR+T TL+++GYL R Sbjct: 6 KQQGVTLTVERGLEVLHAFRAVRAPLSNAELVRRTGLPKATVSRLTTTLISIGYLRRVGG 65 Query: 88 GLRYQIGMQGLVLGHNYRANNPVKLYARPIMQEYADEHDMSVALATGDGMDTLYIEYCKS 147 G ++++ L +GH Y NPV P+MQ+ AD+ ++SVALA +D +YI + S Sbjct: 66 GRQFELSAGALSIGHAYLEANPVTRLVTPVMQKLADKLNLSVALAVPHRLDMVYIAWRAS 125 Query: 148 PRIATLRMGVGMRMPMELTSIGRTYLWAQRPQERERLLSD-IRRRGDDKQAANSMLRIEQ 206 RIATLR+GVG +PM T++GR YL+A RE L++ + GDD A +E Sbjct: 126 ARIATLRLGVGSLLPMASTAVGRAYLYALPDAMREPLIAALLEAAGDD--AGTVRENLEA 183 Query: 207 AFDHLEKFGYCVAMGEFQRDSFGISVPVYLGNPAIPMALNCGGILPAPSDEHIHNVLVPR 266 AF+ L + G C+++GE+QR+++G++VP+ +G MALNCG + P I + P Sbjct: 184 AFEDLRQTGVCMSVGEYQRNAYGVAVPIVVGRTRTLMALNCGAVELEPDMAAIRQRVAPE 243 Query: 267 LVQTAVRLAAATADID 282 L A L+ +DID Sbjct: 244 LKTAAETLSMILSDID 259 >gb|EGD05040.1| IclR family transcriptional regulator [Burkholderia sp. TJI49] Length = 270 Score = 195 bits (496), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 103/240 (42%), Positives = 149/240 (62%), Gaps = 3/240 (1%) Query: 33 THTLERALTVLKAFGGYPGPVTNAELVRRTGFSKASVSRITATLVALGYLDRASDGLRYQ 92 T TL+R L VL+AF P+TN EL +RTG S+++VSR+T+TL+ LGY+ R + G +++ Sbjct: 19 TQTLDRGLQVLRAFHAERTPLTNGELAQRTGMSRSAVSRLTSTLIHLGYIRRVAGGTQFE 78 Query: 93 IGMQGLVLGHNYRANNPVKLYARPIMQEYADEHDMSVALATGDGMDTLYIEYCKSPRIAT 152 + +G+ Y NPV A P MQ+ AD ++SVALA DG D LYI + S IAT Sbjct: 79 LATGVFGIGYAYLETNPVTRLAHPPMQQLADRLNVSVALAAPDGFDMLYIAHRTSAGIAT 138 Query: 153 LRMGVGMRMPMELTSIGRTYLWA-QRPQERERLLSDIRRRGDDKQAANSMLRIEQAFDHL 211 LR+GVG +PM T+IGR +LW P+ R+ + + G ++A + I+ AFD L Sbjct: 139 LRLGVGSLLPMGWTAIGRAWLWTLPEPERRQYVARLLEAAGPQREAMR--IGIDNAFDDL 196 Query: 212 EKFGYCVAMGEFQRDSFGISVPVYLGNPAIPMALNCGGILPAPSDEHIHNVLVPRLVQTA 271 G C++ GEFQR ++GI++P+ +G A PM+L+CG I P P + I +VP L Q A Sbjct: 197 GSNGVCMSFGEFQRHAYGIALPISVGRSATPMSLSCGAIRPDPDLDAIRQHIVPALKQAA 256 >ref|NP_882948.1| IclR family regulatory protein [Bordetella parapertussis 12822] ref|NP_887158.1| IclR family transcriptional regulator [Bordetella bronchiseptica RB50] emb|CAE36187.1| IclR family regulatory protein [Bordetella parapertussis] emb|CAE31108.1| IclR family regulatory protein [Bordetella bronchiseptica RB50] Length = 269 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 104/265 (39%), Positives = 154/265 (58%), Gaps = 1/265 (0%) Query: 21 DASTEKAEKAGGTHTLERALTVLKAFGGYPGPVTNAELVRRTGFSKASVSRITATLVALG 80 D E ++ T+ER L VL+AF P++NAELVRRTG KA+VSR+T+TL+ +G Sbjct: 6 DTVDEHDSESAALMTVERGLKVLRAFRSDRTPLSNAELVRRTGLPKATVSRLTSTLLQVG 65 Query: 81 YLDRASDGLRYQIGMQGLVLGHNYRANNPVKLYARPIMQEYADEHDMSVALATGDGMDTL 140 +L + +++ L +GH Y N + A+P++Q AD+ D+SVAL DG+D L Sbjct: 66 FLRQVPGRREFELAAGSLGIGHAYLDTNEMLQAAQPLLQNLADQLDVSVALGIQDGLDLL 125 Query: 141 YIEYCKSPRIATLRMGVGMRMPMELTSIGRTYLWAQRPQERERLLSDIRRRGDDKQAANS 200 YI Y S ++ATLR+GVG +PM TSIGR YLWA ++ +L+++ +R D+ AA Sbjct: 126 YIGYRVSRKVATLRLGVGSVLPMSTTSIGRAYLWALPCDQQRQLIAEYKRHAGDEGAALE 185 Query: 201 MLRIEQAFDHLEKFGYCVAMGEFQRDSFGISVPVYLGNPAIPMALNCGGILPAPSDEHIH 260 I +FD L G C MG +QR +FG+++P++ G IP++++CG + Sbjct: 186 R-SIHASFDELASTGTCAVMGGYQRRTFGVAMPIWAGRQRIPISMSCGKADVELDLQAER 244 Query: 261 NVLVPRLVQTAVRLAAATADIDSML 285 + P L QTA L AD D L Sbjct: 245 ERIAPALKQTAAALQELLADFDGQL 269 >ref|YP_004127556.1| regulatory protein iclr [Alicycliphilus denitrificans BC] gb|ADV00669.1| regulatory protein IclR [Alicycliphilus denitrificans BC] Length = 264 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 104/252 (41%), Positives = 151/252 (59%), Gaps = 1/252 (0%) Query: 25 EKAEKAGGTHTLERALTVLKAFGGYPGPVTNAELVRRTGFSKASVSRITATLVALGYLDR 84 ++A + T+ER L VL+AF P+TN ELVRRTG KA+VSR+T+TL+ +G+L Sbjct: 5 KQAGDSAALMTVERGLEVLRAFRSDRTPLTNTELVRRTGLPKATVSRLTSTLLQVGFLRL 64 Query: 85 ASDGLRYQIGMQGLVLGHNYRANNPVKLYARPIMQEYADEHDMSVALATGDGMDTLYIEY 144 +++ L +GH Y A N + A+P+MQE AD D+SVAL DG+D LY+ Y Sbjct: 65 VPGKREFELSAGALGIGHAYLATNEMLQAAQPLMQELADRLDVSVALGIQDGIDMLYVGY 124 Query: 145 CKSPRIATLRMGVGMRMPMELTSIGRTYLWAQRPQERERLLSDIRRRGDDKQAANSMLRI 204 S ++ATLR+GVG +PM TSIGR YLW P +R +L+ + +RR + A I Sbjct: 125 RVSRKVATLRLGVGSVLPMGATSIGRAYLWGLPPAQRRQLIDEHKRRAGAQGEALERA-I 183 Query: 205 EQAFDHLEKFGYCVAMGEFQRDSFGISVPVYLGNPAIPMALNCGGILPAPSDEHIHNVLV 264 E +F LE G C +G +QR ++G+++P+ G+ +PM+L+CG E + Sbjct: 184 EASFAELEARGTCAVLGGYQRGTYGVALPIRAGSEGVPMSLSCGRADVDLDLEAERERIA 243 Query: 265 PRLVQTAVRLAA 276 P L +TAVRL A Sbjct: 244 PALKETAVRLEA 255