BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0080.p (401 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_367285.1| branched chain amino acid ABC transporter perip... 498 e-139 ref|NP_882940.1| extracellular ligand binding protein [Bordetell... 486 e-135 ref|YP_004127588.1| extracellular ligand-binding receptor [Alicy... 482 e-134 ref|YP_004387387.1| extracellular ligand-binding receptor [Alicy... 482 e-134 ref|NP_882717.1| hypothetical protein BPP0363 [Bordetella parape... 453 e-125 >ref|YP_367285.1| branched chain amino acid ABC transporter periplasmic ligand-binding protein [Burkholderia sp. 383] gb|ABB06641.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Burkholderia sp. 383] Length = 395 Score = 498 bits (1282), Expect = e-139, Method: Compositional matrix adjust. Identities = 240/390 (61%), Positives = 306/390 (78%), Gaps = 1/390 (0%) Query: 9 KVLAGSTVAALLTCGVSAAHADEIIKLGLSIPLSGAAANWGKGSEWLCNAAAKEVADAGG 68 + L +++A V + A E IKLGLS+PLSG+ A WG G++WLC AA E+A +GG Sbjct: 7 RRLLRTSIAIACCAHVPFSTAGETIKLGLSVPLSGSGAPWGVGADWLCRKAAAEIAASGG 66 Query: 69 VKVGGKVYNYKCVAYDNKYNAAEGTKVAQTLLNRDGIRFIGGSLGTAPVKALQSLSEREG 128 V+V G+ N++CV YDNKYNAA+G KVAQ L+N+D ++F+ GS+GTAPV+ALQSL+ER+G Sbjct: 67 VRVKGQTVNFECVTYDNKYNAADGAKVAQALVNKDDVKFVAGSIGTAPVRALQSLTERKG 126 Query: 129 ALHFTTAWGSSIKGPKFPLTFTIMNTVNEISFPLTRFVKETNPSIKTVSLLNPNDATGQE 188 L FTTAWG+SIKGP +PLTFT MNT EI+ PLT F+ +T+P IKTV+LLNPNDATGQE Sbjct: 127 VLLFTTAWGASIKGPSYPLTFTQMNTTLEIARPLTGFIAKTHP-IKTVALLNPNDATGQE 185 Query: 189 TEALARKAWTAAGVQVISSDWYDRGTTEFQPIASKMAAAKADVIDLASTPPADSGVVFKE 248 TE +ARKAW A GV+V+SSDWY+RG++EFQP+A+K++A K D IDL STPPAD+G+VFKE Sbjct: 186 TEKIARKAWEAVGVKVVSSDWYERGSSEFQPVAAKLSALKPDGIDLCSTPPADAGIVFKE 245 Query: 249 LKVLGWKGVQAVQVGTGAEGIIATGGTAVDGTYMGAAMVFDSALTTPKQKKLNDAAKAAI 308 L LGW GV+ V+VGTGA G+IATGG+AV G Y+GAA+ D A T Q+ L+D + A Sbjct: 246 LGGLGWNGVKIVEVGTGASGLIATGGSAVQGVYLGAAVSLDGASATAHQRALDDGVRKAT 305 Query: 309 GESLNSVQISFYDSVMALKAAMEASQSVDPKLVAAALPTVKFESFYGVSSGFGGKDVYGT 368 G+S+N+VQI YD+V ALKAAME +QS P VA A+ V F SFYG SGFGGK VYG+ Sbjct: 306 GDSINAVQIGIYDAVYALKAAMEKAQSTAPADVAKAMGGVTFTSFYGSQSGFGGKAVYGS 365 Query: 369 PQQILIPVIVTQIKNGKLTEVRRIASEEMK 398 PQQ+L+PVIVTQ+K+GKL EV RIAS E++ Sbjct: 366 PQQMLLPVIVTQLKDGKLVEVTRIASGELR 395 >ref|NP_882940.1| extracellular ligand binding protein [Bordetella parapertussis 12822] ref|NP_887148.1| branched-chain amino acid ABC transporter substrate-binding protein [Bordetella bronchiseptica RB50] emb|CAE36177.1| extracellular ligand binding protein [Bordetella parapertussis] emb|CAE31098.1| extracellular ligand binding protein [Bordetella bronchiseptica RB50] Length = 389 Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust. Identities = 238/379 (62%), Positives = 298/379 (78%), Gaps = 4/379 (1%) Query: 14 STVAALLTCGVSAAHADEIIKLGLSIPLSGAAANWGKGSEWLCNAAAKEVADAGGVKVGG 73 S A + + +HA E IKLG+SIPLSG+ ANWGKGSEWLC AA+E+ AGGVKV G Sbjct: 13 SGFAIAMLAAATLSHA-ETIKLGMSIPLSGSGANWGKGSEWLCAKAAEEIKAAGGVKVQG 71 Query: 74 KVYNYKCVAYDNKYNAAEGTKVAQTLLNRDGIRFIGGSLGTAPVKALQSLSEREGALHFT 133 KVY+++CV YDNKYNAAEG KVAQ L++RDG++++ GS+G APV+ALQSL+ER G L FT Sbjct: 72 KVYDFECVGYDNKYNAAEGAKVAQALVSRDGVKYVAGSIGVAPVRALQSLTERRGVLLFT 131 Query: 134 TAWGSSIKGPKFPLTFTIMNTVNEISFPLTRFVKETNPSIKTVSLLNPNDATGQETEALA 193 AWG+SIKGPKFPLTFT MN+VNEIS P+ VK+ +P IKTV LLNPNDATGQETE +A Sbjct: 132 AAWGNSIKGPKFPLTFTQMNSVNEISEPMIAHVKKLHPEIKTVVLLNPNDATGQETEKVA 191 Query: 194 RKAWTAAGVQVISSDWYDRGTTEFQPIASKMAAAKADVIDLASTPPADSGVVFKELKVLG 253 + AW GV+V++SDWY+RGT+EFQPIA+K+ + K D++DLASTPPAD+G+VF+ELK LG Sbjct: 192 KAAWEKNGVKVLASDWYERGTSEFQPIAAKLNSLKPDLVDLASTPPADAGLVFRELKALG 251 Query: 254 WKGVQAVQVGTGAEGIIATGGTAVDGTYMGAAMVFDSALTTPKQKKLNDAAKAAIGESLN 313 W GV+ V+VGTGA+G++ATG AVDGTY+GAA+ D + QK LND K GE++N Sbjct: 252 WNGVKVVEVGTGADGLLATGKDAVDGTYLGAAVAVDG--LSAHQKALNDGVKKVTGENIN 309 Query: 314 SVQISFYDSVMALKAAMEASQSVDPKLVAAALPTVKFESFYGVSSGFGGKDVYGTPQQIL 373 SVQI FYDSV A+KAAME +QSVDP+ VA +P VKF+SF+G FGGK VYG+ QQ+ Sbjct: 310 SVQIGFYDSVYAIKAAMEKAQSVDPQQVAKVMPDVKFQSFFG-EVDFGGKSVYGSDQQMQ 368 Query: 374 IPVIVTQIKNGKLTEVRRI 392 +PVI+TQI L EV R+ Sbjct: 369 LPVIITQISGTALKEVGRV 387 >ref|YP_004127588.1| extracellular ligand-binding receptor [Alicycliphilus denitrificans BC] gb|ADV00701.1| Extracellular ligand-binding receptor [Alicycliphilus denitrificans BC] Length = 391 Score = 482 bits (1241), Expect = e-134, Method: Compositional matrix adjust. Identities = 227/362 (62%), Positives = 289/362 (79%), Gaps = 3/362 (0%) Query: 31 EIIKLGLSIPLSGAAANWGKGSEWLCNAAAKEVADAGGVKVGGKVYNYKCVAYDNKYNAA 90 E IKLGLSIPLSG+ ANWGKGSEWLC AA+E+ GGVKV GKVYN++CV YDNKYNAA Sbjct: 30 ETIKLGLSIPLSGSGANWGKGSEWLCGRAAEEIKAQGGVKVQGKVYNFECVGYDNKYNAA 89 Query: 91 EGTKVAQTLLNRDGIRFIGGSLGTAPVKALQSLSEREGALHFTTAWGSSIKGPKFPLTFT 150 EG KVAQ L+ RDG++++ GS+GTAPV+ALQSL+ER L FT+AWG+SIKGP FPLTF+ Sbjct: 90 EGAKVAQALVARDGVKYVAGSIGTAPVRALQSLTERRNVLMFTSAWGTSIKGPNFPLTFS 149 Query: 151 IMNTVNEISFPLTRFVKETNPSIKTVSLLNPNDATGQETEALARKAWTAAGVQVISSDWY 210 MN+VNEIS P+ +V + +P +KTV+LLNPNDATGQETE +A+ AW GV+V+ SDWY Sbjct: 150 QMNSVNEISEPMIEYVMKLHPGVKTVALLNPNDATGQETEKVAKAAWEKNGVKVLVSDWY 209 Query: 211 DRGTTEFQPIASKMAAAKADVIDLASTPPADSGVVFKELKVLGWKGVQAVQVGTGAEGII 270 +RGT+EFQPIA+K+ AAK D+IDLASTPPAD+G++FKELK +GW GV+ V+VGTGA+G++ Sbjct: 210 ERGTSEFQPIAAKLNAAKPDLIDLASTPPADAGLIFKELKAMGWNGVKVVEVGTGADGLV 269 Query: 271 ATGGTAVDGTYMGAAMVFDSALTTPKQKKLNDAAKAAIGESLNSVQISFYDSVMALKAAM 330 ATG AV G Y+GAA+ DS QK+LN+ + GES+NSVQI FYD+ A+KAAM Sbjct: 270 ATGKDAVGGAYLGAAVAVDS--MNAHQKELNEGVRKVTGESINSVQIGFYDAPWAIKAAM 327 Query: 331 EASQSVDPKLVAAALPTVKFESFYGVSSGFGGKDVYGTPQQILIPVIVTQIKNGKLTEVR 390 E +QS+DP VA + TV+F+SF+G +GFGGK VYG+ QQ+ +PVI+TQ+ L EV Sbjct: 328 EKAQSIDPVQVAKVMSTVRFKSFFG-ETGFGGKAVYGSDQQMQLPVIITQVVGTTLKEVG 386 Query: 391 RI 392 R+ Sbjct: 387 RV 388 >ref|YP_004387387.1| extracellular ligand-binding receptor [Alicycliphilus denitrificans K601] gb|AEB83871.1| Extracellular ligand-binding receptor [Alicycliphilus denitrificans K601] Length = 390 Score = 482 bits (1240), Expect = e-134, Method: Compositional matrix adjust. Identities = 227/362 (62%), Positives = 290/362 (80%), Gaps = 3/362 (0%) Query: 31 EIIKLGLSIPLSGAAANWGKGSEWLCNAAAKEVADAGGVKVGGKVYNYKCVAYDNKYNAA 90 E IKLGLSIPLSG+ ANWGKGSEW+C AA+EV GGVKV G+ + ++CV YDNKYNAA Sbjct: 30 ETIKLGLSIPLSGSGANWGKGSEWMCAKAAQEVNAQGGVKVKGQAHQFECVGYDNKYNAA 89 Query: 91 EGTKVAQTLLNRDGIRFIGGSLGTAPVKALQSLSEREGALHFTTAWGSSIKGPKFPLTFT 150 EG KVAQ L+ RD ++F+ GS+G AP +ALQSL+ER L FT AWG+S+KGPKFPLTF+ Sbjct: 90 EGAKVAQALVARDEVKFVAGSIGVAPARALQSLTERRNVLLFTAAWGNSMKGPKFPLTFS 149 Query: 151 IMNTVNEISFPLTRFVKETNPSIKTVSLLNPNDATGQETEALARKAWTAAGVQVISSDWY 210 MN+ NEIS PL VK+ +P +KTV LLNPNDATGQETE +A+ AW GV+V+ SDWY Sbjct: 150 QMNSPNEISEPLITHVKKLHPGVKTVVLLNPNDATGQETEKVAKAAWEKNGVKVLVSDWY 209 Query: 211 DRGTTEFQPIASKMAAAKADVIDLASTPPADSGVVFKELKVLGWKGVQAVQVGTGAEGII 270 +RGT+EFQPIA+K+ AAK DV+DLASTPPAD+G++FKELK LGW GV+ V+VGTGA+G++ Sbjct: 210 ERGTSEFQPIAAKLHAAKPDVVDLASTPPADAGLIFKELKALGWNGVKVVEVGTGADGLL 269 Query: 271 ATGGTAVDGTYMGAAMVFDSALTTPKQKKLNDAAKAAIGESLNSVQISFYDSVMALKAAM 330 ATG AV+G Y+GAA+ DS TP+QK L++ + A GES+N++QI FYD+V A+KAAM Sbjct: 270 ATGKDAVEGAYLGAAVSVDS--MTPQQKALDEGVRKATGESVNAIQIGFYDAVWAIKAAM 327 Query: 331 EASQSVDPKLVAAALPTVKFESFYGVSSGFGGKDVYGTPQQILIPVIVTQIKNGKLTEVR 390 E +QS+DP VA A+PTV+F+SFYG +GFGGKDVYG+ QQ+ +PVI+T++ L EV Sbjct: 328 EKAQSIDPAEVAKAMPTVRFKSFYG-ETGFGGKDVYGSDQQMRLPVIITKLVGTSLQEVG 386 Query: 391 RI 392 R+ Sbjct: 387 RV 388 >ref|NP_882717.1| hypothetical protein BPP0363 [Bordetella parapertussis 12822] emb|CAE35947.1| putative exported protein [Bordetella parapertussis] Length = 402 Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust. Identities = 214/382 (56%), Positives = 283/382 (74%), Gaps = 1/382 (0%) Query: 19 LLTCGVSAAHADEIIKLGLSIPLSGAAANWGKGSEWLCNAAAKEVADAGGVKVGGKVYNY 78 ++ G + A + + LG+S P+SGAAA WG G EW AAKE+ DAGGVK+GG Y + Sbjct: 17 VMAAGSAHAQESKTLILGVSAPMSGAAATWGLGQEWTAKQAAKEINDAGGVKIGGTTYKF 76 Query: 79 KCVAYDNKYNAAEGTKVAQTLLNRDGIRFIGGSLGTAPVKALQSLSEREGALHFTTAWGS 138 + AYDNKYNAAEGTKVAQ ++NRD R++ GS+GTAP+ ALQSL+ER G + FT+AWG Sbjct: 77 EVRAYDNKYNAAEGTKVAQNIVNRDKSRYVVGSIGTAPILALQSLTERNGVILFTSAWGK 136 Query: 139 SIKGPKFPLTFTIMNTVNEISFPLTRFVKETNPSIKTVSLLNPNDATGQETEALARKAWT 198 ++KGP+ P T T NT EI PL +VK +P+IKTV++LNPNDATG+ETE +A+KAW Sbjct: 137 TVKGPQKPYTLTQSNTPFEILAPLYDYVKAKHPAIKTVAMLNPNDATGKETEPVAQKAWE 196 Query: 199 AAGVQVISSDWYDRGTTEFQPIASKMAAAKADVIDLASTPPADSGVVFKELKVLGWKGVQ 258 GV+V+S +WY+RGTT+FQPIA K+AA K D IDL TPPAD+GVVF+EL VLGW GV+ Sbjct: 197 KLGVKVVSVNWYERGTTQFQPIAQKLAAVKPDAIDLGVTPPADAGVVFRELSVLGWNGVK 256 Query: 259 AVQVGTGAEGIIATGGTAVDGTYMGAAMVFDSALTTPKQKKLNDAAKAAIGESLNSVQIS 318 VGTGA ++ GG A DG YMG + ++ A T KQ++LN+ K AIGESLN +Q++ Sbjct: 257 VQPVGTGAAQLVEIGGKAADGVYMGFSGDYEGAQATAKQRELNEGMKKAIGESLNPLQLA 316 Query: 319 FYDSVMALKAAMEASQSVDPKLVAAALPTVKFESFYGVSSGFGGKDVYGTPQQILIPVIV 378 YDSV ALKA MEA+ S++P + ALPT+ FE+ YG + FGG YG+PQQ+LIP+++ Sbjct: 317 PYDSVYALKAGMEAANSIEPADIVKALPTIVFETSYG-KTAFGGAQTYGSPQQMLIPIMI 375 Query: 379 TQIKNGKLTEVRRIASEEMKQR 400 TQI++GKL EV R+ +E++QR Sbjct: 376 TQIQDGKLVEVERVVPQELQQR 397