BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0077.p         (137 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001353183.1| integration host factor alpha-subunit [Janth...   245   1e-63
ref|YP_001100075.1| integration host factor subunit alpha [Hermi...   245   2e-63
ref|YP_004752163.1| integration host factor subunit alpha [Colli...   236   8e-61
ref|ZP_08274684.1| Integration host factor alpha subunit [Oxalob...   231   3e-59
ref|YP_003775392.1| integration host factor alpha-subunit [Herba...   202   1e-50

>ref|YP_001353183.1| integration host factor alpha-subunit [Janthinobacterium sp.
           Marseille]
 gb|ABR88677.1| integration host factor alpha-subunit [Janthinobacterium sp.
           Marseille]
          Length = 165

 Score =  245 bits (626), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 121/134 (90%), Positives = 128/134 (95%)

Query: 1   MNNVNSSEFQSVLDADLQRAVLESEVRSQAEKNLPTLTKAELAELLFEQVGLNKREAKDM 60
           MN+VNS+E QSVL ADL RA++E++VRSQAEKNLPTLTKAELAELLFEQVGLNKREAKDM
Sbjct: 29  MNDVNSAELQSVLAADLNRAMMEAQVRSQAEKNLPTLTKAELAELLFEQVGLNKREAKDM 88

Query: 61  VETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVTFHASQK 120
           VETFFDEIRNALERGE+VKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVTFHASQK
Sbjct: 89  VETFFDEIRNALERGESVKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVTFHASQK 148

Query: 121 LKEMVEVSSGQPLA 134
           LK MVE SS QPLA
Sbjct: 149 LKGMVEDSSQQPLA 162


>ref|YP_001100075.1| integration host factor subunit alpha [Herminiimonas
           arsenicoxydans]
 emb|CAL61950.1| Integration host factor subunit alpha (IHF-alpha) [Herminiimonas
           arsenicoxydans]
          Length = 151

 Score =  245 bits (625), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 121/134 (90%), Positives = 127/134 (94%)

Query: 1   MNNVNSSEFQSVLDADLQRAVLESEVRSQAEKNLPTLTKAELAELLFEQVGLNKREAKDM 60
           MN+VNSSE QSVL ADL RA+LE++VRSQAEK+LPTLTKAELAELLFEQVGLNKREAKDM
Sbjct: 15  MNDVNSSELQSVLAADLNRAMLEAQVRSQAEKDLPTLTKAELAELLFEQVGLNKREAKDM 74

Query: 61  VETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVTFHASQK 120
           VETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVTFHASQK
Sbjct: 75  VETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVTFHASQK 134

Query: 121 LKEMVEVSSGQPLA 134
           LK MVEVS+   LA
Sbjct: 135 LKSMVEVSNQTSLA 148


>ref|YP_004752163.1| integration host factor subunit alpha [Collimonas fungivorans
           Ter331]
 gb|AEK61340.1| Integration host factor alpha subunit [Collimonas fungivorans
           Ter331]
          Length = 147

 Score =  236 bits (602), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 115/133 (86%), Positives = 125/133 (93%)

Query: 1   MNNVNSSEFQSVLDADLQRAVLESEVRSQAEKNLPTLTKAELAELLFEQVGLNKREAKDM 60
           MNN+ + EF+SVLDADL RA+ E++ RSQAEKNLPTLTKAELAELLFEQVGLNKREAKDM
Sbjct: 1   MNNMQTVEFESVLDADLNRAMREAQARSQAEKNLPTLTKAELAELLFEQVGLNKREAKDM 60

Query: 61  VETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVTFHASQK 120
           VETFFDEIR+ALERGE+VKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVTFHASQK
Sbjct: 61  VETFFDEIRDALERGESVKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVTFHASQK 120

Query: 121 LKEMVEVSSGQPL 133
           LK MVE +S QP+
Sbjct: 121 LKGMVEAASLQPI 133


>ref|ZP_08274684.1| Integration host factor alpha subunit [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF31844.1| Integration host factor alpha subunit [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 137

 Score =  231 bits (588), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 114/126 (90%), Positives = 120/126 (95%)

Query: 1   MNNVNSSEFQSVLDADLQRAVLESEVRSQAEKNLPTLTKAELAELLFEQVGLNKREAKDM 60
           MN+V S+EFQSVL ADL RA+LE++VRSQAEK LPTLTKAELAELLFEQVGLNKREAKDM
Sbjct: 1   MNDVISTEFQSVLSADLNRAMLEAQVRSQAEKELPTLTKAELAELLFEQVGLNKREAKDM 60

Query: 61  VETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVTFHASQK 120
           VETFFDEIR+ALERGE VKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVTFHASQK
Sbjct: 61  VETFFDEIRDALERGELVKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRVVTFHASQK 120

Query: 121 LKEMVE 126
           LK MVE
Sbjct: 121 LKSMVE 126


>ref|YP_003775392.1| integration host factor alpha-subunit [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ63484.1| integration host factor alpha-subunit protein [Herbaspirillum
           seropedicae SmR1]
          Length = 104

 Score =  202 bits (514), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 97/104 (93%), Positives = 102/104 (98%)

Query: 34  LPTLTKAELAELLFEQVGLNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQ 93
           +PTLTKAELAELLFEQVGLNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQ
Sbjct: 1   MPTLTKAELAELLFEQVGLNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQ 60

Query: 94  RPGRNPKTGEEIPITARRVVTFHASQKLKEMVEVSSGQPLALAV 137
           RPGRNPKTGEEIPITARRVVTFHASQKLKEMVE+SSG P+ ++V
Sbjct: 61  RPGRNPKTGEEIPITARRVVTFHASQKLKEMVELSSGSPVEMSV 104