BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0076.p         (136 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775393.1| transcription regulator protein [Herbaspiril...   213   5e-54
ref|YP_001100074.1| putative transcriptional regulator [Herminii...   197   5e-49
ref|YP_001353184.1| MerR family transcriptional regulator [Janth...   194   4e-48
ref|ZP_04578154.1| transcriptional regulator [Oxalobacter formig...   192   1e-47
ref|ZP_04575957.1| transcriptional regulator [Oxalobacter formig...   190   7e-47

>ref|YP_003775393.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63485.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 135

 Score =  213 bits (543), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 110/137 (80%), Positives = 118/137 (86%), Gaps = 5/137 (3%)

Query: 1   MNERVNKPAVIVLPPIPAKRYFTIGEVSELCGVKPHVLRYWEQEFTQLKPVKRRGNRRYY 60
           MN+RVNKPA IVLPPIPAKRYFTIGEVSELCGVKPHVLRYWEQEFTQLKPVKRRGNRRYY
Sbjct: 1   MNDRVNKPAAIVLPPIPAKRYFTIGEVSELCGVKPHVLRYWEQEFTQLKPVKRRGNRRYY 60

Query: 61  QHHEVLLIRRIRELLYEQGFTISGARNKLDGHMGEERQEGLPEEVE-VSVSMDAAQIDAV 119
           QHHEVLLIRRIRELLYEQGFTISGARNKLDG    E+    PE VE  ++S+D   I+ V
Sbjct: 61  QHHEVLLIRRIRELLYEQGFTISGARNKLDGSNEPEQ----PEIVEPPAISLDEEGIEKV 116

Query: 120 RVELLDILELLRPTARA 136
           R ELLDIL++LRP A A
Sbjct: 117 RAELLDILKVLRPEAVA 133


>ref|YP_001100074.1| putative transcriptional regulator [Herminiimonas arsenicoxydans]
 emb|CAL61949.1| Putative transcriptional regulatory protein MerR family
           [Herminiimonas arsenicoxydans]
          Length = 129

 Score =  197 bits (500), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 99/132 (75%), Positives = 111/132 (84%), Gaps = 4/132 (3%)

Query: 1   MNERVNKPAVIVLPPIPAKRYFTIGEVSELCGVKPHVLRYWEQEFTQLKPVKRRGNRRYY 60
           MNER+NK  +  LPPIPAKRYFTIGEVSELCGVKPHVLRYWEQEFTQLKPVKRRGNRRYY
Sbjct: 1   MNERINKAELAALPPIPAKRYFTIGEVSELCGVKPHVLRYWEQEFTQLKPVKRRGNRRYY 60

Query: 61  QHHEVLLIRRIRELLYEQGFTISGARNKLDGHMGEER-QEGLPEEVEVSVSMDAAQIDAV 119
           QHHEVLLIRRIRELLYEQGFTISGARNKLD  + E R  E LP +   +V++D   + A+
Sbjct: 61  QHHEVLLIRRIRELLYEQGFTISGARNKLDSRILEARTDEDLPLD---AVTIDPNAVLAI 117

Query: 120 RVELLDILELLR 131
           R EL++IL LL+
Sbjct: 118 RKELMEILMLLK 129


>ref|YP_001353184.1| MerR family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gb|ABR89045.1| transcriptional regulator, MerR family [Janthinobacterium sp.
           Marseille]
          Length = 130

 Score =  194 bits (493), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 96/133 (72%), Positives = 110/133 (82%), Gaps = 5/133 (3%)

Query: 1   MNERVNKPAVIVLPPIPAKRYFTIGEVSELCGVKPHVLRYWEQEFTQLKPVKRRGNRRYY 60
           MNER+ KP ++ LPPIPAKRYFTIGEVSELCGVKPHVLRYWEQEFTQLKPVKRRGNRRYY
Sbjct: 1   MNERIQKPELVALPPIPAKRYFTIGEVSELCGVKPHVLRYWEQEFTQLKPVKRRGNRRYY 60

Query: 61  QHHEVLLIRRIRELLYEQGFTISGARNKLDGHMGEER--QEGLPEEVEVSVSMDAAQIDA 118
           QHHEVLLIRRIRELLYEQGFTISGARNKLD  + E     + +P+      ++DA Q+  
Sbjct: 61  QHHEVLLIRRIRELLYEQGFTISGARNKLDSRILEANGDDDAVPDS---GPTVDADQLAD 117

Query: 119 VRVELLDILELLR 131
           +R EL++IL LL+
Sbjct: 118 IRNELVEILALLK 130


>ref|ZP_04578154.1| transcriptional regulator [Oxalobacter formigenes OXCC13]
 gb|EEO29127.1| transcriptional regulator [Oxalobacter formigenes OXCC13]
          Length = 135

 Score =  192 bits (488), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 98/131 (74%), Positives = 109/131 (83%), Gaps = 3/131 (2%)

Query: 1   MNERVNKPAVIVLPPIPAKRYFTIGEVSELCGVKPHVLRYWEQEFTQLKPVKRRGNRRYY 60
           MNERV+KP  + LPPIPAKRYFTIGEVSELCGVKPHVLRYWEQEFTQLKPVKRRGNRRYY
Sbjct: 1   MNERVHKPETVALPPIPAKRYFTIGEVSELCGVKPHVLRYWEQEFTQLKPVKRRGNRRYY 60

Query: 61  QHHEVLLIRRIRELLYEQGFTISGARNKLDGHMGEERQ-EGLPEEVEVSVSMDAAQIDAV 119
           QHHEVLLIRRIRELLY+QGFTISGARNKL+   G     E LPE  E  ++  +  ++A+
Sbjct: 61  QHHEVLLIRRIRELLYDQGFTISGARNKLNEREGRTAPVEVLPE--ESFMAPPSVDVEAI 118

Query: 120 RVELLDILELL 130
           R EL DIL+LL
Sbjct: 119 RSELNDILQLL 129


>ref|ZP_04575957.1| transcriptional regulator [Oxalobacter formigenes HOxBLS]
 gb|EEO26919.1| transcriptional regulator [Oxalobacter formigenes HOxBLS]
          Length = 137

 Score =  190 bits (482), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 95/131 (72%), Positives = 108/131 (82%), Gaps = 1/131 (0%)

Query: 1   MNERVNKPAVIVLPPIPAKRYFTIGEVSELCGVKPHVLRYWEQEFTQLKPVKRRGNRRYY 60
           MNERV+K   +VLP IPAKRYFTIGEVSELCGVKPHVLRYWEQEFTQLKPVKRRGNRRYY
Sbjct: 1   MNERVHKSEAVVLPSIPAKRYFTIGEVSELCGVKPHVLRYWEQEFTQLKPVKRRGNRRYY 60

Query: 61  QHHEVLLIRRIRELLYEQGFTISGARNKLDGHMGEE-RQEGLPEEVEVSVSMDAAQIDAV 119
           QHHEVLLIRRIRELLY+QGFTISGARNKL+     +   E +PE+ EV+++     ++ V
Sbjct: 61  QHHEVLLIRRIRELLYDQGFTISGARNKLNERGARKVVAEEIPEKDEVAITGSFVDLETV 120

Query: 120 RVELLDILELL 130
           R EL +IL LL
Sbjct: 121 RSELSEILALL 131