BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0066.p         (239 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EGP46784.1| capsular polysaccharide biosynthesis protein [Ach...   130   2e-28
ref|YP_787146.1| capsular polysaccharide biosynthesis protein [B...   116   2e-24

>gb|EGP46784.1| capsular polysaccharide biosynthesis protein [Achromobacter
           xylosoxidans AXX-A]
          Length = 759

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/235 (36%), Positives = 114/235 (48%), Gaps = 11/235 (4%)

Query: 6   AFETHLSVRYGVTPELATQARLGMDLSGAGKLDKQTPPATTP-LRAANGEFEFEALQRTI 64
           A  T L+   GV P+ A Q RLG+DL  A       P A  P L  A      +A    I
Sbjct: 533 AITTGLADGLGVKPQWALQGRLGLDLGAA-------PGAALPVLPNATALLNHDASAGRI 585

Query: 65  QLRTPQARGFFGFLMKRRVGDDNVAIELLGKSRGFTGVLLTALDNRPLVSSRRILISASS 124
            +  P     FG     R+G  +  ++    + G    +LTALD +PL  SR +L+S  +
Sbjct: 586 VIDAPALWAVFGATGTGRIGGQSAWMQF--DAAGAASAMLTALDGQPLAQSRHMLLSLGN 643

Query: 125 AVTGNQPGSMPPRPKELIRYKSDAKWWTLEQDAGMNSKPSGPRDVEGPVWMERNEARISL 184
             TG QPGSMP RPK  + Y+    W TLE DAG ++ PSG      P W+ R  A + L
Sbjct: 644 DTTGTQPGSMPARPKMRVPYRGQGAWSTLEPDAG-SAGPSGSYATRAPAWLRRTPAMLGL 702

Query: 185 RTQAKRISVYPLDGSGKHMTALDGNRASLNNGMATIHIQAEIAQASPWYEVVADE 239
             +  R+SVYPLDG G+   AL    A        + +Q     ASPWYE+V +E
Sbjct: 703 APRTGRLSVYPLDGEGRRRAALPAADAVSGADGVRVRVQTRDDGASPWYELVFEE 757


>ref|YP_787146.1| capsular polysaccharide biosynthesis protein [Bordetella avium
           197N]
 emb|CAJ50258.1| putative capsular polysaccharide biosynthesis protein [Bordetella
           avium 197N]
          Length = 757

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/176 (35%), Positives = 93/176 (52%), Gaps = 3/176 (1%)

Query: 64  IQLRTPQARGFFGFLMKRRVGDDNVAIELLGKSRGFTGVLLTALDNRPLVSSRRILISAS 123
           + +  P     FG   K R+G++ V I+          V+LT LD RP+ +SR +L++  
Sbjct: 583 LLIDAPGVWALFGSTGKSRIGNNAVWIQFAPPE--LASVMLTPLDGRPISASRHLLLALG 640

Query: 124 SAVTGNQPGSMPPRPKELIRYKSDAKWWTLEQDAGMNSKPSGPRDVEGPVWMERNEARIS 183
           +   G+QPG+ PPRPK L+ Y+  + W TL  D G +  PSG      P W+ R  A + 
Sbjct: 641 NPTMGSQPGATPPRPKTLVPYRGQSGWMTLNPDPGADG-PSGDMATRAPAWLRRQPAELG 699

Query: 184 LRTQAKRISVYPLDGSGKHMTALDGNRASLNNGMATIHIQAEIAQASPWYEVVADE 239
           L  +  R+ VYPLDG G+   AL       +   A I +Q + A +SPWYE+V ++
Sbjct: 700 LAPRGGRLIVYPLDGEGRRRAALPAAEVMQDAAGARIRVQQDTALSSPWYELVFED 755