BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0060.p (460 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_787149.1| capsular polysaccharide biosynthesis protein [B... 364 2e-98 gb|EGP46787.1| capsular polysaccharide biosynthesis protein [Ach... 358 1e-96 ref|YP_003673713.1| chain length determinant protein EpsF [Methy... 210 5e-52 ref|YP_001791396.1| chain length determinant protein EpsF [Lepto... 208 1e-51 ref|YP_546133.1| lipopolysaccharide biosynthesis [Methylobacillu... 206 9e-51 >ref|YP_787149.1| capsular polysaccharide biosynthesis protein [Bordetella avium 197N] emb|CAJ50261.1| putative capsular polysaccharide biosynthesis protein [Bordetella avium 197N] Length = 461 Score = 364 bits (934), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 201/455 (44%), Positives = 316/455 (69%), Gaps = 7/455 (1%) Query: 7 ETGLSS-KQLASMISARRSTIFKTLLATVAATIVVTLLLPKTYTASSDIYLDYKGNDPIN 65 E+GL S Q+ +M++AR I + +ATV T ++ LLLP+ +TA++D+++DY+ NDPIN Sbjct: 6 ESGLLSLHQVWAMVAARSRLIAQVAIATVLLTGLLLLLLPRVWTATADVFIDYRENDPIN 65 Query: 66 GRLFSPMMDESYMQTQFDMIKSQAVAEKVIDALDLERTAAYHEAVERSGEARAHSQLVKR 125 GR FS ++DESYMQTQ D+I+SQAVA+++I L L + +A+ S RAH+ LV Sbjct: 66 GRSFSALLDESYMQTQIDLIRSQAVADQMIQTLGL---LSGEDALNGS---RAHTALVAE 119 Query: 126 INDHTMVVTRRSSRVIEVEYAADTAEQSRDLTNAVVRAYIDLNQQISSASARSRREQYNA 185 I V +++SRV+ V ++ADT +++R+ NA+V AY+ ++Q ISS +AR+RREQY A Sbjct: 120 IRRSLEVAKQQNSRVLTVSFSADTPQKAREYANAIVNAYLAVSQNISSGAARARREQYTA 179 Query: 186 QLEHLRKEADSIQEKLTKYQQEVGILDPNERNDLQSRQLGDLMTSLITVQNQQQEAQARK 245 QLE LR E D++Q+KLT+YQQE GI+D + D+ R+L D+ T+L+ +++Q+Q A+AR Sbjct: 180 QLEQLRNELDTLQDKLTRYQQETGIVDTPQGGDIDLRRLNDMTTALLALESQEQAARARN 239 Query: 246 SATDSLVRNGLRIDELPDVAQRPNINDLKSKLSDVNKRLADIQEVLGARHPKTVALISER 305 A + L+++G+++++LP+V Q +NDL++ ++ V+++L ++ LG +HP L ++R Sbjct: 240 EANERLLKSGVKVEDLPEVGQSAPVNDLRNGVTIVDQQLGQLRGSLGPKHPSVAGLQAQR 299 Query: 306 DDIAARISREARSSLDAQQIDARRLAMQEQALQKEVDTQRAKLLEQKQHRDTITSYQRQL 365 + + R+A + L +Q+ + RL Q+ +LQ ++ QR K+L+Q RD I +YQRQ Sbjct: 300 ATMQVEVERQAAAVLASQRSELDRLQAQKASLQADIKAQRDKVLDQMAKRDRIAAYQRQF 359 Query: 366 DSVERVYNTALAKYDEILMASNINTFDLTVLRVAEVPSTHSKPLLLQNIAASIVVGLALG 425 VE+VYNTAL KYD ILMASNI+ +L VLR A+ P++ S P + +++ ++VVG+ G Sbjct: 360 AGVEQVYNTALQKYDGILMASNISLPNLAVLRAADAPTSPSSPKVTRSLVLALVVGVLAG 419 Query: 426 FCLALLYELGQRRVRCEDDLVRGIHLPLIGNIGIR 460 LALL EL +RR+RC DDL+R LP++G IG R Sbjct: 420 LALALLLELSRRRIRCTDDLLRNTRLPVMGRIGRR 454 >gb|EGP46787.1| capsular polysaccharide biosynthesis protein [Achromobacter xylosoxidans AXX-A] Length = 446 Score = 358 bits (919), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 205/442 (46%), Positives = 310/442 (70%), Gaps = 7/442 (1%) Query: 18 MISARRSTIFKTLLATVAATIVVTLLLPKTYTASSDIYLDYKGNDPINGRLFSPMMDESY 77 M++AR + + LAT+A T ++ L+LP+ +TASSD+++DY+ NDPINGR FS ++DESY Sbjct: 1 MLAARARLVARVTLATLALTCLLLLVLPRVWTASSDVFIDYRENDPINGRSFSALLDESY 60 Query: 78 MQTQFDMIKSQAVAEKVIDALDLERTAAYHEAVERSGEARAHSQLVKRINDHTMVVTRRS 137 MQTQ DMI+SQAVA+ VI L+L + S +AH++LV I + VV +++ Sbjct: 61 MQTQIDMIRSQAVADHVISTLEL------LSGPDASQGTKAHNELVAYIRRNLEVVKQQN 114 Query: 138 SRVIEVEYAADTAEQSRDLTNAVVRAYIDLNQQISSASARSRREQYNAQLEHLRKEADSI 197 SRV+ V ++ADT +++R+ TNAVV +Y+ ++Q ISSA+AR+R EQY AQLE LR E D+I Sbjct: 115 SRVLTVSFSADTPQKAREFTNAVVNSYLAVSQNISSAAARARSEQYTAQLEQLRGEVDAI 174 Query: 198 QEKLTKYQQEVGILDPNERN-DLQSRQLGDLMTSLITVQNQQQEAQARKSATDSLVRNGL 256 Q+KLT+YQQE GI+D + D+ R L D+ TS++ + +Q + A+AR T+ L+++G+ Sbjct: 175 QDKLTRYQQETGIVDTEQTGGDIDVRSLNDMTTSMLALDSQLEAAKARNETTERLLKSGI 234 Query: 257 RIDELPDVAQRPNINDLKSKLSDVNKRLADIQEVLGARHPKTVALISERDDIAARISREA 316 R ++LP+V Q INDL++ L+ V +L ++ LG RHP L+++R + A I+R+A Sbjct: 235 RPEDLPEVGQVAPINDLRNGLTVVEHQLGQLRGSLGPRHPTVAGLLAQRAQMQADITRQA 294 Query: 317 RSSLDAQQIDARRLAMQEQALQKEVDTQRAKLLEQKQHRDTITSYQRQLDSVERVYNTAL 376 +++++AQ+ + RL Q+ ALQ+++D QRAK+LEQ RD I +Y+RQ VE+VY TAL Sbjct: 295 KATIEAQRGELERLQTQKAALQRDIDAQRAKVLEQMAKRDRIAAYRRQFAGVEQVYQTAL 354 Query: 377 AKYDEILMASNINTFDLTVLRVAEVPSTHSKPLLLQNIAASIVVGLALGFCLALLYELGQ 436 KYD ILMASNI+ +L VLR A++P++ S+P + ++A +VVGL G LA+L EL + Sbjct: 355 QKYDSILMASNISLPNLAVLRAADMPTSPSRPKVRSSLALGLVVGLLAGLALAMLLELSR 414 Query: 437 RRVRCEDDLVRGIHLPLIGNIG 458 RR+RC +DL R P++G IG Sbjct: 415 RRIRCAEDLERNTRQPVLGRIG 436 >ref|YP_003673713.1| chain length determinant protein EpsF [Methylotenera versatilis 301] gb|ADI29136.1| chain length determinant protein EpsF [Methylotenera versatilis 301] Length = 481 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 137/450 (30%), Positives = 235/450 (52%), Gaps = 7/450 (1%) Query: 10 LSSKQLASMISARRSTIFKTLLATVAATIVVTLLLPKTYTASSDIYLDYKGNDPINGRLF 69 +S QL S++ AR + TV T V++ +LPKTYTA++ + ++ KG DP+ G + Sbjct: 1 MSFSQLLSILVARIRILAWVFFLTVITTTVISFMLPKTYTATTSLVINSKGADPVTGFML 60 Query: 70 SPMMDESYMQTQFDMIKSQAVAEKVIDALDLERTAAYHEAVERS--GEARAHSQLVKRIN 127 P YM TQ D+I+S+ VA KV+D L + + E+S GE + Sbjct: 61 PPASMAGYMATQVDIIQSRNVALKVVDKLGVVNSPIARSQFEKSTKGEGNITDWYADQFL 120 Query: 128 DHTMVVTRRSSRVIEVEYAADTAEQSRDLTNAVVRAYIDLNQQISSASARSRREQYNAQL 187 + V R S VIE+ Y + S L NA AYI+ N Q+ A+ ++ ++ Sbjct: 121 QNLDVKPSRESSVIEISYQGADPKFSAMLANAFAEAYINTNLQLKIEPAKQAALWFDQEI 180 Query: 188 EHLRKEADSIQEKLTKYQQEVGILDPNERNDLQSRQLGDLMTSLITVQNQQQEAQARKSA 247 + LR+ + QE+L+ YQ+E GI ++R D+++ +L +L L+ Q Q ++ +R S Sbjct: 181 KGLRQNVELSQERLSAYQKEHGIASSDDRLDIETARLNELSNQLVMAQAQTYDSNSRHSQ 240 Query: 248 TDSLVRNGLRIDELPDVAQRPNINDLKSKLSDVNKRLADIQEVLGARHPKTVALISERDD 307 ++ G+ E P+V P I LKS+L+ + +L D+ + LG HP+ A E ++ Sbjct: 241 ----LKRGVE-SEAPEVLANPLIQGLKSQLAQADAKLTDLSQHLGQNHPQYQAAQEEVNN 295 Query: 308 IAARISREARSSLDAQQIDARRLAMQEQALQKEVDTQRAKLLEQKQHRDTITSYQRQLDS 367 + I+ E + + AR +E ++ + Q+ +L+ K RD + R+ +S Sbjct: 296 LRHLIASETAKTSSSVGQSARVSQQKEAEVRTSLAAQKEHVLKFKSQRDEMAVLLREAES 355 Query: 368 VERVYNTALAKYDEILMASNINTFDLTVLRVAEVPSTHSKPLLLQNIAASIVVGLALGFC 427 +R+Y+ AL ++ + M S D++VL A P HS P + NI SI++G L Sbjct: 356 AQRIYDNALQRFGQTNMESKSVQTDVSVLNPAVPPLKHSSPKIFINILLSIILGALLAVG 415 Query: 428 LALLYELGQRRVRCEDDLVRGIHLPLIGNI 457 +A++ E+ RRVR +DL++ + LP++ +I Sbjct: 416 IAIVAEVLDRRVRTAEDLMQMLDLPVLADI 445 >ref|YP_001791396.1| chain length determinant protein EpsF [Leptothrix cholodnii SP-6] gb|ACB34631.1| chain length determinant protein EpsF [Leptothrix cholodnii SP-6] Length = 472 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 144/451 (31%), Positives = 237/451 (52%), Gaps = 14/451 (3%) Query: 10 LSSKQLASMISARRSTIFKTLLATVAATIVVTLLLPKTYTASSDIYLDYKGNDPINGRLF 69 ++ Q S++ AR L+ TV TI V+L+LPK YTAS+ + LD + DPI G + Sbjct: 1 MTFSQFLSILKARWIAALLVLVLTVGTTIGVSLMLPKNYTASAAVVLDVRSPDPIAGMVL 60 Query: 70 SPMMDESYMQTQFDMIKSQAVAEKVIDALDL----ERTAAYHEAVERSGEARAH-SQLVK 124 M +YM TQ D+I+S VA++V+ L L E + +A G A + L+K Sbjct: 61 GAMAMPAYMATQVDIIQSDRVAQRVVQGLRLTENPETRQQWQDATGGKGNFEAWLADLLK 120 Query: 125 RINDHTMVVTRRSSRVIEVEYAADTAEQSRDLTNAVVRAYIDLNQQISSASARSRREQYN 184 + D V R S VI + Y + + L NA VR+Y+D++ + + A+ E ++ Sbjct: 121 KKLD---VKPSRESNVINIGYTSPDPRFAAALANAFVRSYMDVSIGLRVSPAKQYNEFFD 177 Query: 185 AQLEHLRKEADSIQEKLTKYQQEVGILDPNERNDLQSRQLGDLMTSLITVQNQQQEAQAR 244 A+ + LR+ + Q KLT YQ+ GIL +ER D+++++L +L + L+ +Q E+ +R Sbjct: 178 ARGKELREALEQAQAKLTTYQKTSGILATDERFDVENQRLNELSSQLVALQALSAESTSR 237 Query: 245 KSATDSLVRNGLRIDELPDVAQRPNINDLKSKLSDVNKRLADIQEVLGARHPKTVALISE 304 + RN + D+L DV P + L++ LS RL ++ LG HP+ V L + Sbjct: 238 SAQA----RN--QADQLGDVINNPVVAGLRADLSRQEARLMEMNSKLGDAHPQVVELRAN 291 Query: 305 RDDIAARISREARSSLDAQQIDARRLAMQEQALQKEVDTQRAKLLEQKQHRDTITSYQRQ 364 ++ RI E R + I+ +E ++ ++ QRAK+L KQ RD ++ Sbjct: 292 IAELRQRIDGETRRVSGSVGINNTINKAREGEVRAALEAQRAKVLALKQQRDEALVLMKE 351 Query: 365 LDSVERVYNTALAKYDEILMASNINTFDLTVLRVAEVPSTHSKPLLLQNIAASIVVGLAL 424 +++ +R Y+ +A+ + + S +++VL A P+ HS P LL N S+ +G L Sbjct: 352 VETAQRAYDQVVARASQTNLESQNTQTNISVLTPATEPADHSSPKLLLNALLSVFLGTLL 411 Query: 425 GFCLALLYELGQRRVRCEDDLVRGIHLPLIG 455 AL+ EL RRVR +DL G+ LP++G Sbjct: 412 AVGFALVRELMDRRVRTVEDLAEGLGLPVLG 442 >ref|YP_546133.1| lipopolysaccharide biosynthesis [Methylobacillus flagellatus KT] gb|ABE50292.1| lipopolysaccharide biosynthesis [Methylobacillus flagellatus KT] Length = 469 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 135/450 (30%), Positives = 237/450 (52%), Gaps = 7/450 (1%) Query: 10 LSSKQLASMISARRSTIFKTLLATVAATIVVTLLLPKTYTASSDIYLDYKGNDPINGRLF 69 +S + S+I AR I TL TV T +VT+LLPK Y A++ + ++YKG DP+ G + Sbjct: 1 MSFIRFISIIKARYKIIIFTLFITVLTTAIVTILLPKNYKATASVLVNYKGADPVTGVML 60 Query: 70 SPMMDESYMQTQFDMIKSQAVAEKVIDALDLERTAAYHEAVER--SGEARAHSQLVKRIN 127 + YM TQ D+I S+ VA+KVID L L A E + SG+ L + Sbjct: 61 PAQLMPGYMATQVDIISSKNVAKKVIDKLGLADVPAVKEDFYQATSGKGEIKEWLADLLL 120 Query: 128 DHTMVVTRRSSRVIEVEYAADTAEQSRDLTNAVVRAYIDLNQQISSASARSRREQYNAQL 187 V R S +I++ + + + + N +Y+ + Q+ ++ + QL Sbjct: 121 KKLQVKPSRESSIIDISFFGVNPQFAATIANEFAESYMQTSIQLKVEPSQKAALYFVEQL 180 Query: 188 EHLRKEADSIQEKLTKYQQEVGILDPNERNDLQSRQLGDLMTSLITVQNQQQEAQARKSA 247 + LR++ Q KL++YQQE GI+ +ER D++ +L +L + L+ Q Q EA++R+ Sbjct: 181 KELREDLAQAQSKLSEYQQEKGIVSVDERLDVERARLNELSSQLVIAQAQVMEARSREKN 240 Query: 248 TDSLVRNGLRIDELPDVAQRPNINDLKSKLSDVNKRLADIQEVLGARHPKTVALISERDD 307 + +G E PDVA P I +LK++++ R AD+ + HP + +E ++ Sbjct: 241 S-----SGKEAYESPDVAANPIIQNLKTEIARAESRFADVSQKFERNHPFYLGAKAEIEN 295 Query: 308 IAARISREARSSLDAQQIDARRLAMQEQALQKEVDTQRAKLLEQKQHRDTITSYQRQLDS 367 + + + R+ +S ++R L +E ++ ++ Q+ K+L+ + RD ++ R++++ Sbjct: 296 LKSELDRQIKSVSSNVASNSRILQQREAEIRLALNNQKEKVLQLNRDRDILSVLTREVEN 355 Query: 368 VERVYNTALAKYDEILMASNINTFDLTVLRVAEVPSTHSKPLLLQNIAASIVVGLALGFC 427 ++ Y+ A+ +Y + + N D+++L A P T + P LL NI SI++G+ LG Sbjct: 356 AQKAYDMAMQRYTQTNIEGQSNQSDISLLNPAVAPLTPTSPNLLLNIILSILLGMFLGIG 415 Query: 428 LALLYELGQRRVRCEDDLVRGIHLPLIGNI 457 +L E RRVR DDL+ + PL+G I Sbjct: 416 FGVLAEFVDRRVRTADDLIEVLQAPLLGTI 445