BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0048.p         (142 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003778083.1| major facilitator superfamily permease [Herb...   189   1e-46
ref|YP_004754873.1| Bcr/CflA subfamily drug resistance transport...   154   6e-36
ref|YP_840752.1| major facilitator superfamily transporter DHA1 ...   151   4e-35
ref|YP_002007797.1| bicyclomycin resistance protein ;sulfonamide...   151   4e-35
ref|YP_004681399.1| bicyclomycin resistance protein Bcr [Cupriav...   150   5e-35

>ref|YP_003778083.1| major facilitator superfamily permease [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ66175.1| permease of the major facilitator superfamily protein
           [Herbaspirillum seropedicae SmR1]
          Length = 406

 Score =  189 bits (479), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 88/117 (75%), Positives = 106/117 (90%)

Query: 1   MAALTAMGALSIDMYLPSFSFIAKDLGVASNTIQLTLSTFLIGLALGQMFYGPISDRFGR 60
           +A LTAMGAL+IDMYLPSF+ IA+DLGV +N +QLTL+TFLIG+A+GQMFYGP+SDRFGR
Sbjct: 20  LAGLTAMGALAIDMYLPSFTAIAQDLGVGTNQVQLTLATFLIGVAVGQMFYGPLSDRFGR 79

Query: 61  KPPLYFGICLYVVSSIGCTFAPNLETLLVLRFFQGLGGSSGMVIPRAVVRDKMGADG 117
           KPPL+FGI LY V S+ C FA N+ETL+VLR FQGLGGS+GMVIPRA+VRD+MGA+G
Sbjct: 80  KPPLFFGIALYFVCSLLCIFAQNIETLIVLRLFQGLGGSAGMVIPRAMVRDRMGAEG 136


>ref|YP_004754873.1| Bcr/CflA subfamily drug resistance transporter [Collimonas
           fungivorans Ter331]
 gb|AEK64050.1| Drug resistance transporter Bcr/CflA subfamily [Collimonas
           fungivorans Ter331]
          Length = 412

 Score =  154 bits (388), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 70/113 (61%), Positives = 92/113 (81%)

Query: 5   TAMGALSIDMYLPSFSFIAKDLGVASNTIQLTLSTFLIGLALGQMFYGPISDRFGRKPPL 64
           TA+G+LSIDMYLPSF  IA+  GV SN +QLTL++FL+GLA+GQMFYGP+SDRFGRKPPL
Sbjct: 25  TAIGSLSIDMYLPSFPTIAQQFGVGSNLVQLTLASFLVGLAVGQMFYGPLSDRFGRKPPL 84

Query: 65  YFGICLYVVSSIGCTFAPNLETLLVLRFFQGLGGSSGMVIPRAVVRDKMGADG 117
           Y G+ LY++ S+ C  + ++  L++ RF QGLGG +GMVI RAV+RD++G  G
Sbjct: 85  YVGMTLYLLGSLACMVSQDVVALILFRFLQGLGGCAGMVIARAVIRDRLGTTG 137


>ref|YP_840752.1| major facilitator superfamily transporter DHA1 family protein
           [Ralstonia eutropha H16]
 emb|CAJ96022.1| MFS transporter, DHA1 family [Ralstonia eutropha H16]
          Length = 401

 Score =  151 bits (381), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 70/114 (61%), Positives = 89/114 (78%)

Query: 3   ALTAMGALSIDMYLPSFSFIAKDLGVASNTIQLTLSTFLIGLALGQMFYGPISDRFGRKP 62
           +L A+  LSIDMYLPSF  +A DLGV    +QLTL TFL+GLALGQ FYGP SDRFGRKP
Sbjct: 22  SLMAIAPLSIDMYLPSFPSLAGDLGVDIGQVQLTLGTFLVGLALGQAFYGPFSDRFGRKP 81

Query: 63  PLYFGICLYVVSSIGCTFAPNLETLLVLRFFQGLGGSSGMVIPRAVVRDKMGAD 116
           PLY G+CLYV +++GC  A ++E+L++ RF Q LGG +GMV+ RAV+RD++ A 
Sbjct: 82  PLYVGLCLYVAAAVGCALARSVESLMLWRFLQALGGCAGMVMARAVIRDRLEAH 135


>ref|YP_002007797.1| bicyclomycin resistance protein ;sulfonamide resistance protein;
           mfs family [Cupriavidus taiwanensis LMG 19424]
 emb|CAQ71740.1| Bicyclomycin resistance protein ;Sulfonamide resistance protein;
           MFS family [Cupriavidus taiwanensis LMG 19424]
          Length = 407

 Score =  151 bits (381), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 70/114 (61%), Positives = 89/114 (78%)

Query: 3   ALTAMGALSIDMYLPSFSFIAKDLGVASNTIQLTLSTFLIGLALGQMFYGPISDRFGRKP 62
           +L A+  LSIDMYLPSF  +A DLGV    +QLTL  FL+GLALGQ FYGP SDRFGRKP
Sbjct: 22  SLMAIAPLSIDMYLPSFPTLAGDLGVDIGQVQLTLGAFLVGLALGQAFYGPFSDRFGRKP 81

Query: 63  PLYFGICLYVVSSIGCTFAPNLETLLVLRFFQGLGGSSGMVIPRAVVRDKMGAD 116
           PLY G+CLYV++++GC  A N+E+L++ RF Q LGG +GMV+ RAV+RD++ A 
Sbjct: 82  PLYVGLCLYVLAAMGCALARNVESLMLWRFLQALGGCAGMVMARAVIRDRLEAH 135


>ref|YP_004681399.1| bicyclomycin resistance protein Bcr [Cupriavidus necator N-1]
 gb|AEI80167.1| bicyclomycin resistance protein Bcr [Cupriavidus necator N-1]
          Length = 401

 Score =  150 bits (380), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 70/114 (61%), Positives = 89/114 (78%)

Query: 3   ALTAMGALSIDMYLPSFSFIAKDLGVASNTIQLTLSTFLIGLALGQMFYGPISDRFGRKP 62
           +L A+  LSIDMYLPSF  +A DLGV    +QLTL TFL+GLALGQ FYGP SDRFGRKP
Sbjct: 22  SLMAIAPLSIDMYLPSFPSLAGDLGVDIGQVQLTLGTFLVGLALGQAFYGPFSDRFGRKP 81

Query: 63  PLYFGICLYVVSSIGCTFAPNLETLLVLRFFQGLGGSSGMVIPRAVVRDKMGAD 116
           PLY G+CLYV +++GC  A ++E+L++ RF Q LGG +GMV+ RAV+RD++ A 
Sbjct: 82  PLYVGLCLYVAAAVGCALARSVESLMLWRFLQALGGCAGMVMARAVIRDRLEAH 135