BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0040.p         (84 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003778085.1| diguanylate cyclase/phosphodiesterase with P...    69   3e-10
ref|YP_001116559.1| diguanylate cyclase [Burkholderia vietnamien...    68   4e-10
ref|YP_373152.1| diguanylate cyclase [Burkholderia sp. 383] >gi|...    67   9e-10
ref|ZP_02381217.1| diguanylate cyclase (GGDEF domain) [Burkholde...    65   3e-09
ref|ZP_03544473.1| diguanylate cyclase [Comamonas testosteroni K...    65   3e-09

>ref|YP_003778085.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           domain-containing protein [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ66177.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor domain
           protein [Herbaspirillum seropedicae SmR1]
          Length = 573

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 47/67 (70%)

Query: 1   VQFAENIRNAVAALQIPHEESPFGCVTCSIGVIAVQVDENMSTDTLLRLADVALYQAKAL 60
           +Q AENI  A+  L++PH +SPFG ++ SIGV  +  DE+ + + ++R+AD ALY AK  
Sbjct: 499 LQQAENICQAIFELKLPHADSPFGYISASIGVAVLLPDEHTAPEQMVRIADQALYHAKYQ 558

Query: 61  GRNRVAL 67
           GRNRV L
Sbjct: 559 GRNRVVL 565


>ref|YP_001116559.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
 gb|ABO57094.1| diguanylate cyclase [Burkholderia vietnamiensis G4]
          Length = 510

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/62 (59%), Positives = 45/62 (72%), Gaps = 1/62 (1%)

Query: 4   AENIRNAVAALQIPHEESPFGCVTCSIGVIAVQVDENMSTDTLLRLADVALYQAKALGRN 63
           A+ IR ++AAL I HE SP+G +T SIGV A  V   +S  TLLRLAD ALY+AK+ GRN
Sbjct: 440 ADAIRRSIAALDIAHERSPYGHLTVSIGV-ATAVGGRVSAATLLRLADEALYRAKSGGRN 498

Query: 64  RV 65
           RV
Sbjct: 499 RV 500


>ref|YP_373152.1| diguanylate cyclase [Burkholderia sp. 383]
 gb|ABB12508.1| diguanylate cyclase [Burkholderia sp. 383]
          Length = 510

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 40/72 (55%), Positives = 47/72 (65%), Gaps = 2/72 (2%)

Query: 4   AENIRNAVAALQIPHEESPFGCVTCSIGVIAVQVDENMSTDTLLRLADVALYQAKALGRN 63
           AE IR A+AAL I H +SP+G VT SIG  A   D  ++  TLLR AD ALY+AK+ GRN
Sbjct: 440 AEGIRRAIAALGIEHAKSPYGRVTASIGA-ATSTDGRVNAATLLRRADEALYRAKSGGRN 498

Query: 64  RVALSDPPGAAD 75
           RV L   P  AD
Sbjct: 499 RV-LEALPSTAD 509


>ref|ZP_02381217.1| diguanylate cyclase (GGDEF domain) [Burkholderia ubonensis Bu]
          Length = 511

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 41/62 (66%)

Query: 4   AENIRNAVAALQIPHEESPFGCVTCSIGVIAVQVDENMSTDTLLRLADVALYQAKALGRN 63
           AE IR A+A L + H  SP+G VT SIG      D  ++  TLL+LAD ALY+AK+ GRN
Sbjct: 440 AEAIRRAIAGLDVEHVMSPYGLVTVSIGTATTTRDRAINAATLLKLADEALYEAKSSGRN 499

Query: 64  RV 65
           RV
Sbjct: 500 RV 501


>ref|ZP_03544473.1| diguanylate cyclase [Comamonas testosteroni KF-1]
 gb|EED68759.1| diguanylate cyclase [Comamonas testosteroni KF-1]
          Length = 616

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 42/70 (60%)

Query: 4   AENIRNAVAALQIPHEESPFGCVTCSIGVIAVQVDENMSTDTLLRLADVALYQAKALGRN 63
           AENIR AV+ L I H  S FGC+T SIG  A    +++    +LR AD ALY AK  GRN
Sbjct: 547 AENIREAVSELAIAHTGSEFGCITVSIGCAAWVPGKDLDVQEVLRSADKALYGAKMTGRN 606

Query: 64  RVALSDPPGA 73
           +V LS    A
Sbjct: 607 KVVLSSSSAA 616