BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0034.p (174 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_04948398.1| P pilus assembly protein porin PapC [Burkhold... 170 8e-41 emb|CCD28917.1| Fimbrial biogenesis outer membrane usher protein... 168 3e-40 ref|ZP_06685783.1| fimbrial biogenesis outer membrane usher prot... 150 9e-35 ref|YP_002875394.1| putative outer membrane usher protein [Pseud... 147 6e-34 ref|ZP_07778248.1| hypothetical protein PFWH6_5695 [Pseudomonas ... 145 2e-33 >ref|ZP_04948398.1| P pilus assembly protein porin PapC [Burkholderia dolosa AUO158] gb|EAY71569.1| P pilus assembly protein porin PapC [Burkholderia dolosa AUO158] Length = 914 Score = 170 bits (430), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 81/155 (52%), Positives = 102/155 (65%) Query: 2 GDESGIRVSTPYGPVWTDPWGQAVISQMAPYASSRLEIATKSLPRNVDIKNGYKLVEPGR 61 G+ G+R+ T GPVWTD +GQAVI + PY SR+E+ T++LPRNVDI NG + +E GR Sbjct: 758 GNIGGVRLQTSSGPVWTDAFGQAVIPSLPPYRRSRVELDTRTLPRNVDIGNGVRTIEAGR 817 Query: 62 GSVNFVTFDTIKVRRILLNTKGADGNPLPKGAFVLDAEGQFVTTVVDDGQIFLINGVPNS 121 GSVN VTFD ++ RR+ L DG PLPKGA +G FVTTVV GQIFL + VP+ Sbjct: 818 GSVNRVTFDVVRTRRVWLEAATEDGRPLPKGASATTEDGTFVTTVVGGGQIFLTDAVPHQ 877 Query: 122 KLEVSLPDGRQCSLQFELPSRADPNMFFETAEARC 156 L V D C+L ELP +AD + F+E A A C Sbjct: 878 TLIVRTSDDSTCTLTVELPDKADDDAFYERARAVC 912 >emb|CCD28917.1| Fimbrial biogenesis outer membrane usher protein precursor [Candidatus Glomeribacter gigasporarum BEG34] Length = 824 Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 78/158 (49%), Positives = 106/158 (67%), Gaps = 2/158 (1%) Query: 1 VGDESGIRVSTPYGPVWTDPWGQAVISQMAPYASSRLEIATKSLPRNVDIKNGYKLVEPG 60 VG+ SG+++ TP G VWTD WG+AVI ++ + + + T +LPRN+DI NGY+ V G Sbjct: 664 VGNLSGVKIDTPQGTVWTDTWGRAVIPRLPAFGKGEISLETYTLPRNIDIGNGYRTVRAG 723 Query: 61 RGSVNFVTFDTIKVRRILLNTKGADGNPLPKGAFVLDAEGQFVTTVVDDGQIFL--INGV 118 RGSVNFV F +KVRR+LLN ADG+ LPKGA V D +G+F+T V+D GQIF+ I+ Sbjct: 724 RGSVNFVDFKVVKVRRVLLNAVNADGSALPKGASVHDQDGRFITIVIDKGQIFIDNIDSE 783 Query: 119 PNSKLEVSLPDGRQCSLQFELPSRADPNMFFETAEARC 156 + L V + DG +C L F+LP RAD ++E A C Sbjct: 784 SITTLYVEMFDGTRCQLDFKLPERADSEAYYEKLNAVC 821 >ref|ZP_06685783.1| fimbrial biogenesis outer membrane usher protein [Achromobacter piechaudii ATCC 43553] gb|EFF77318.1| fimbrial biogenesis outer membrane usher protein [Achromobacter piechaudii ATCC 43553] Length = 816 Score = 150 bits (378), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 76/161 (47%), Positives = 102/161 (63%), Gaps = 9/161 (5%) Query: 1 VGDESGIRVSTPYGPVWTDPWGQAVISQMAPYASSRLEIATKSLPRNVDIKNGYKLVEPG 60 VGD SG+R+STP G VWTDPWG+AVI + Y + ++++AT SL RNVD+ NG ++P Sbjct: 658 VGDLSGVRLSTPAGSVWTDPWGRAVIPSLPAYRNGQVQVATSSLARNVDLINGRYSLDPA 717 Query: 61 RGSVNFVTFDTIKVRRILLNTKGADGNPLPKGAFVLDAEGQFVTTVVDDGQIFLINGVPN 120 RGSV + F + VRR LL DG PL KGA VLDA G F+T V GQIFL P+ Sbjct: 718 RGSVAAIDFAVVTVRRALLTATYPDGTPLAKGAAVLDASGAFITLVGGGGQIFL----PD 773 Query: 121 SKLE-----VSLPDGRQCSLQFELPSRADPNMFFETAEARC 156 + E V+ P+G C+L F++P+ +P +E A+A C Sbjct: 774 LRTESAPYRVTSPEGVACTLAFDIPATPNPTALYERAQATC 814 >ref|YP_002875394.1| putative outer membrane usher protein [Pseudomonas fluorescens SBW25] emb|CAY53383.1| putative outer membrane usher protein [Pseudomonas fluorescens SBW25] Length = 825 Score = 147 bits (371), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 75/156 (48%), Positives = 99/156 (63%) Query: 1 VGDESGIRVSTPYGPVWTDPWGQAVISQMAPYASSRLEIATKSLPRNVDIKNGYKLVEPG 60 VGD +VSTP GPVWTD GQAVI + Y+++ L++ T+SLP+ VD+KNG K++ G Sbjct: 667 VGDIGAAKVSTPQGPVWTDFSGQAVIPGLQAYSNNHLQVQTQSLPKRVDLKNGTKVLAAG 726 Query: 61 RGSVNFVTFDTIKVRRILLNTKGADGNPLPKGAFVLDAEGQFVTTVVDDGQIFLINGVPN 120 RGSVN + FD +KVRR+LL + G PLP+GA V + FVT+VV +G IFL N Sbjct: 727 RGSVNILNFDVVKVRRLLLEAQDEQGRPLPQGAAVFGQDNNFVTSVVGEGMIFLSNIDGP 786 Query: 121 SKLEVSLPDGRQCSLQFELPSRADPNMFFETAEARC 156 L+VSLPD + C LQ D + +ETA C Sbjct: 787 QTLKVSLPDSQSCLLQVNPEQEPDDDQLYETAPVVC 822 >ref|ZP_07778248.1| hypothetical protein PFWH6_5695 [Pseudomonas fluorescens WH6] gb|EFQ60422.1| hypothetical protein PFWH6_5695 [Pseudomonas fluorescens WH6] Length = 823 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 73/156 (46%), Positives = 100/156 (64%) Query: 1 VGDESGIRVSTPYGPVWTDPWGQAVISQMAPYASSRLEIATKSLPRNVDIKNGYKLVEPG 60 VGD R+ TP GPVWTD GQAVI + Y +SR+E+ T+SLP+ VD+KNG +++ G Sbjct: 665 VGDIGSARIDTPQGPVWTDFSGQAVIPGLPAYTNSRIEVQTRSLPKRVDLKNGTQVLAAG 724 Query: 61 RGSVNFVTFDTIKVRRILLNTKGADGNPLPKGAFVLDAEGQFVTTVVDDGQIFLINGVPN 120 RGSVN V F+ +KVRR+L++ + G PLP+GA V +F+T+VV +G IFL + Sbjct: 725 RGSVNTVAFEVVKVRRVLISARDEQGRPLPQGASVFGKNNRFLTSVVGEGMIFLNDMDDT 784 Query: 121 SKLEVSLPDGRQCSLQFELPSRADPNMFFETAEARC 156 L+VSLPD C L + D + F+ETA A C Sbjct: 785 QDLQVSLPDSAFCRPSVVLEDQPDHDKFYETATAVC 820