BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0028.p (228 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776523.1| two component LuxR family transcription regu... 328 3e-88 ref|YP_002983011.1| two component LuxR family transcriptional re... 283 1e-74 ref|YP_001900970.1| two component LuxR family transcriptional re... 283 2e-74 ref|ZP_07777236.1| DNA-binding response regulator, LuxR family [... 234 1e-59 ref|NP_902071.1| transcription regulator [Chromobacterium violac... 223 1e-56 >ref|YP_003776523.1| two component LuxR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64615.1| two component LuxR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 282 Score = 328 bits (842), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 161/242 (66%), Positives = 196/242 (80%), Gaps = 17/242 (7%) Query: 4 WTATKAIRIALLDDHAVVRHGLAARLTEESDFEVVGAYAASKDMMSALRALPADILLIDY 63 WT +RIALLDDHAVVR+GLAARL EE D EVVG++A SK++M+ALRA PAD+LLIDY Sbjct: 41 WTLASRMRIALLDDHAVVRYGLAARLAEEPDLEVVGSFATSKELMTALRASPADLLLIDY 100 Query: 64 SLGANDIDGLNLIRALKVRFPDSKILVSSSHYNPATVALAMRAGARGFVGKEQELSELIA 123 SLG+NDIDGLNLIRAL+VRFP SKILV+S+H NPATVALAM+AGARGFVGK QEL EL+ Sbjct: 101 SLGSNDIDGLNLIRALRVRFPRSKILVTSAHNNPATVALAMKAGARGFVGKSQELGELVQ 160 Query: 124 AVRSVAVGRVHLNPFMAAEISSMLSSNGSD-----------------EESPNGDSLTDNV 166 A+R+V+VGR +LN MA E+++ML+S+ P+ DSL++ Sbjct: 161 AIRTVSVGREYLNAAMARELTAMLASDSPTPAPEGGPPQVRPPRRKRNSPPSSDSLSEMP 220 Query: 167 ELSPREREVLRCCLEGLSVTQIAEKFARSVKTISGQKQAAFRKLGVRNDNELFKIQHQLQ 226 LSPREREVLRCCL+GLSVT IA+KFARSVKTISGQKQ+AFRKLGVR+DNELFKI++Q++ Sbjct: 221 SLSPREREVLRCCLDGLSVTAIADKFARSVKTISGQKQSAFRKLGVRSDNELFKIEYQIK 280 Query: 227 DI 228 D+ Sbjct: 281 DL 282 >ref|YP_002983011.1| two component LuxR family transcriptional regulator [Ralstonia pickettii 12D] ref|ZP_07675277.1| DNA-binding response regulator, LuxR family [Ralstonia sp. 5_7_47FAA] gb|ACS64339.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12D] gb|EFP66335.1| DNA-binding response regulator, LuxR family [Ralstonia sp. 5_7_47FAA] Length = 232 Score = 283 bits (725), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 138/230 (60%), Positives = 179/230 (77%), Gaps = 5/230 (2%) Query: 2 MTWTATKAIRIALLDDHAVVRHGLAARLTEESDFEVVGAYAASKDMMSALR--ALPADIL 59 M WTAT+ IR+ +LDDHAVVRHGLAARL +E+D EV G +A+ ++++ AL+ +L D+L Sbjct: 1 MNWTATRPIRVIVLDDHAVVRHGLAARLKQETDIEVSGMFASGREIVQALKDKSLEVDVL 60 Query: 60 LIDYSLGANDIDGLNLIRALKVRFPDSKILVSSSHYNPATVALAMRAGARGFVGKEQELS 119 L+DYSLG +IDGLNLIR ++VR+PD KILV+S+H+N ATV + M AGARGFVGKE++LS Sbjct: 61 LMDYSLGPTEIDGLNLIRLIRVRYPDLKILVASAHHNMATVGMVMHAGARGFVGKEEDLS 120 Query: 120 ELIAAVRSVAVGRVHLNPFMAAEISSMLSSNGSDEESPNGDSLT---DNVELSPREREVL 176 EL+ A+R+VA G LN +AAE+ S + NG L+ D ELSPREREVL Sbjct: 121 ELVRAIRTVAAGGKRLNAALAAEMERGALSADAPAPVTNGTKLSALIDRSELSPREREVL 180 Query: 177 RCCLEGLSVTQIAEKFARSVKTISGQKQAAFRKLGVRNDNELFKIQHQLQ 226 RCCL+G+SVT IAEKFARS+KTIS QKQ+A+RKLG+R D ELFKI+H+L+ Sbjct: 181 RCCLDGMSVTDIAEKFARSIKTISSQKQSAYRKLGIRTDTELFKIKHELE 230 >ref|YP_001900970.1| two component LuxR family transcriptional regulator [Ralstonia pickettii 12J] gb|ACD28538.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12J] Length = 232 Score = 283 bits (723), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 138/230 (60%), Positives = 179/230 (77%), Gaps = 5/230 (2%) Query: 2 MTWTATKAIRIALLDDHAVVRHGLAARLTEESDFEVVGAYAASKDMMSALR--ALPADIL 59 M WTAT+ IR+ +LDDHAVVRHGLAARL +E+D EV G +A+ ++++ AL+ +L D+L Sbjct: 1 MNWTATRPIRVIVLDDHAVVRHGLAARLKQEADIEVSGMFASGREIVQALKDKSLEVDVL 60 Query: 60 LIDYSLGANDIDGLNLIRALKVRFPDSKILVSSSHYNPATVALAMRAGARGFVGKEQELS 119 L+DYSLG +IDGLNLIR ++VR+PD KILV+S+H+N ATV + M AGARGFVGKE++LS Sbjct: 61 LMDYSLGPTEIDGLNLIRLIRVRYPDLKILVASAHHNMATVGMVMHAGARGFVGKEEDLS 120 Query: 120 ELIAAVRSVAVGRVHLNPFMAAEISSMLSSNGSDEESPNGDSLT---DNVELSPREREVL 176 EL+ A+R+VA G LN +AAE+ S + NG L+ D ELSPREREVL Sbjct: 121 ELVRAIRTVAAGGKRLNAALAAEMERDALSADAPAPVTNGTKLSALIDRSELSPREREVL 180 Query: 177 RCCLEGLSVTQIAEKFARSVKTISGQKQAAFRKLGVRNDNELFKIQHQLQ 226 RCCL+G+SVT IAEKFARS+KTIS QKQ+A+RKLG+R D ELFKI+H+L+ Sbjct: 181 RCCLDGMSVTDIAEKFARSIKTISSQKQSAYRKLGIRTDTELFKIKHELE 230 >ref|ZP_07777236.1| DNA-binding response regulator, LuxR family [Pseudomonas fluorescens WH6] gb|EFQ61714.1| DNA-binding response regulator, LuxR family [Pseudomonas fluorescens WH6] Length = 233 Score = 234 bits (596), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 117/232 (50%), Positives = 155/232 (66%), Gaps = 6/232 (2%) Query: 2 MTWTATKAIRIALLDDHAVVRHGLAARLTEESDFEVVGAYAASKDMMSALRALPADILLI 61 M W+ ++IALLDDHA++R L RL ESDF VVG Y+ ++ ALR P D+L++ Sbjct: 1 MRWSVVSPLKIALLDDHALIREALGVRLNAESDFNVVGIYSQGSQLLQALREQPIDLLML 60 Query: 62 DYSLGANDIDGLNLIRALKVRFPDSKILVSSSHYNPATVALAMRAGARGFVGKEQELSEL 121 DY LG ++DGL LI+ L+ + +IL+ SS PATV +A+RAGA GF GK Q+ +L Sbjct: 61 DYQLGDEELDGLRLIQMLRSLYSSLRILIVSSIERPATVNMAIRAGANGFFGKSQDTEQL 120 Query: 122 IAAVRSVAVGRVHLNPFMAAEISSML------SSNGSDEESPNGDSLTDNVELSPREREV 175 + A+R+VA+ R++L+P MAA + S ++ E P D L D LSP+EREV Sbjct: 121 VRAIRAVAMDRLYLSPAMAAALDSTPKAPSPSTAPAEGEAPPTIDPLIDYPALSPKEREV 180 Query: 176 LRCCLEGLSVTQIAEKFARSVKTISGQKQAAFRKLGVRNDNELFKIQHQLQD 227 LRCCLEG+SV+QIA KF RS KTISGQKQAA RKL V +D ELFK+ +QD Sbjct: 181 LRCCLEGMSVSQIAIKFLRSRKTISGQKQAAMRKLNVTSDAELFKLHRHIQD 232 >ref|NP_902071.1| transcription regulator [Chromobacterium violaceum ATCC 12472] gb|AAQ60073.2| capsula synthesis response regulator transcription regulator protein [Chromobacterium violaceum ATCC 12472] Length = 231 Score = 223 bits (568), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 118/228 (51%), Positives = 161/228 (70%), Gaps = 11/228 (4%) Query: 5 TATKAIRIALLDDHAVVRHGLAARLTEESDFEVVGAYAASKDMMSALR--ALP-ADILLI 61 + +AIR+ LLDDH +V HGL + L D + G++++S +M L A P AD+ +I Sbjct: 7 STEQAIRVILLDDHLMVLHGLGSHLENVPDISLTGSFSSSGQLMRTLAGAAAPLADVAVI 66 Query: 62 DYSLGANDIDGLNLIRALKVRFPDSKILVSSSHYNPATVALAMRAGARGFVGKEQELSEL 121 DY+L +D+DGLNLIRA+++RFP +ILV S++Y PATVALAMR GA GF+GKEQ +SEL Sbjct: 67 DYALRPDDVDGLNLIRAMRIRFPWLRILVMSAYYTPATVALAMRGGAHGFIGKEQGMSEL 126 Query: 122 IAAVRSVAVGRVHLNPFMAAEISSMLSSNGSDEESPNGDSLT---DNVELSPREREVLRC 178 I A+R +A G+ +L+ M + S E S D+L D+ +LSPREREVLRC Sbjct: 127 ILAIRRLAAGQTYLSEDMREAMPQQ-----SGEASIPSDALPNLLDHPDLSPREREVLRC 181 Query: 179 CLEGLSVTQIAEKFARSVKTISGQKQAAFRKLGVRNDNELFKIQHQLQ 226 CL GLSV++IA KF+RS+KTIS QKQ+A +KLG+R+DNELF Q +L+ Sbjct: 182 CLLGLSVSEIAVKFSRSIKTISNQKQSALKKLGLRSDNELFLQQQRLE 229