BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0027.p (230 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776522.1| sensor histidine kinase [Herbaspirillum sero... 164 8e-39 ref|YP_002235358.1| two-component regulatory system sensor kinas... 143 2e-32 ref|YP_001898342.1| multi-sensor hybrid histidine kinase [Ralsto... 142 3e-32 ref|YP_001812314.1| Hpt sensor hybrid histidine kinase [Burkhold... 138 6e-31 ref|NP_902070.1| sensor protein evgS [Chromobacterium violaceum ... 130 2e-28 >ref|YP_003776522.1| sensor histidine kinase [Herbaspirillum seropedicae SmR1] gb|ADJ64614.1| sensor histidine kinase (domains REC and Hpt) protein [Herbaspirillum seropedicae SmR1] Length = 233 Score = 164 bits (416), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 99/198 (50%), Positives = 132/198 (66%), Gaps = 6/198 (3%) Query: 11 QILVVDDSATSRVVIEKQLKKLGCDVATAQDGNSGLAAMQDGEFDLVLLDCQMPDMSGYD 70 ++L+VDDSAT R ++ +L+ LGC V A DG + LAA++ LVLLDC +PD+ G++ Sbjct: 7 RVLLVDDSATIRYAMQNRLQSLGCQVQVAADGAAALAAIRAQPQGLVLLDCFLPDLPGHE 66 Query: 71 VAKIFRRREREE-ELAHTPIIAISAETDTAHMQLCLDSGMDGVLGKPLPVDDLKKMLSLW 129 VA+ R E+E+ + +TP+I ISAE D AH++LCLD GMDG+L KP+ DL+KMLSLW Sbjct: 67 VARQVRALEQEDPQRPYTPLIGISAEADAAHVRLCLDGGMDGMLDKPVQTADLRKMLSLW 126 Query: 130 CDV---DVSAVAPMNIDDMRSVDLTTLFRTTSLEDFAVLQTAMAEADMASVGRLAHRMKG 186 CD D A P + R DL LF +TS D A LQ A D A++G+LAHRMKG Sbjct: 127 CDHECGDEGAALPPREEYAR--DLARLFLSTSQHDLAALQQAHRAGDQATMGKLAHRMKG 184 Query: 187 AALTIAAVDIVATLERIE 204 AALT+ +IVA LE +E Sbjct: 185 AALTMQRSEIVALLECLE 202 >ref|YP_002235358.1| two-component regulatory system sensor kinase protein [Burkholderia cenocepacia J2315] gb|AAS46238.1| CblT [Burkholderia cenocepacia BC7] emb|CAR56621.1| two-component regulatory system, sensor kinase protein [Burkholderia cenocepacia J2315] Length = 844 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 90/221 (40%), Positives = 120/221 (54%), Gaps = 10/221 (4%) Query: 12 ILVVDDSATSRVVIEKQLKKLGCDVATAQDGNSGLAAMQDGEFDLVLLDCQMPDMSGYDV 71 ILVVDD + I+ QL L C A G LA + FD+VLLDC +PD+ GY V Sbjct: 606 ILVVDDHEAVQHAIQHQLDALACRSTVADTGEQALAQFERATFDMVLLDCNLPDIDGYTV 665 Query: 72 AKIFRRREREEELAHTPIIAISAETDTAHMQLCLDSGMDGVLGKPLPVDDLKKMLSLWCD 131 + R ER+ + A TPIIAISA T AH + C DSGMDGVLGKPL +D L++M+ LWC Sbjct: 666 VRRMRDSERQRKQARTPIIAISASTGDAHRERCFDSGMDGVLGKPLRLDALRQMIDLWCA 725 Query: 132 VDVS-AVAPMNIDDMRS-VDLTTLFRTTSLEDFAVLQTAMAEADMASVGRLAHRMKGAAL 189 V+ +AP D + D ++R + D AVL A++ D +HR+KGAA Sbjct: 726 AGVADEIAPPAGDTQSAKADFRAIYRQSVEADLAVLGDALSNDDAERARHASHRIKGAAA 785 Query: 190 TIAAV---DIVATLERIEAIAVSRMPSADLAAEVAALGRQL 227 ++ A LER +A MP + + ALG +L Sbjct: 786 IAGHAATSELAAELERRLQLASGGMPPS-----IRALGDEL 821 >ref|YP_001898342.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J] gb|ACD25910.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J] Length = 818 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 90/224 (40%), Positives = 119/224 (53%), Gaps = 10/224 (4%) Query: 12 ILVVDDSATSRVVIEKQLKKLGCDVATAQDGNSGLAAMQDGEFDLVLLDCQMPDMSGYDV 71 +LVVDD + I+ QL L C A A G + L FD+VLLDC +P + GY V Sbjct: 592 VLVVDDHEAVQHAIQHQLDALACRSAIAGTGEAALEQFASASFDMVLLDCNLPGIDGYTV 651 Query: 72 AKIFRRREREEELAHTPIIAISAETDTAHMQLCLDSGMDGVLGKPLPVDDLKKMLSLWCD 131 A+ R ER+ TPI+AISA TD AH C DSGMDGVLGKPL + L++++ LWC Sbjct: 652 AQRMREIERQRAGERTPIVAISAATDDAHRIRCFDSGMDGVLGKPLRLAALRELIELWCA 711 Query: 132 VDVSA--VAPMNIDDMRSVDLTTLFRTTSLEDFAVLQTAMAEADMASVGRLAHRMKGAAL 189 SA PM D S D+ ++R T D +L +A D+ R AHR+ GAA Sbjct: 712 HGDSARNAEPMEHDLAPSSDVLAIYRQTMKTDLEMLSQGIARRDIEQARRAAHRISGAAA 771 Query: 190 TI---AAVDIVATLERIEAIAVSRMPSADLAAEVAALGRQLQSL 230 + ++ LER + + S D+ AE+ AL LQSL Sbjct: 772 VVEDLPTRNLARELERRLSDSFS-----DINAEIQALLVALQSL 810 >ref|YP_001812314.1| Hpt sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6] gb|ACB69065.1| Hpt sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6] Length = 829 Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 89/209 (42%), Positives = 110/209 (52%), Gaps = 7/209 (3%) Query: 12 ILVVDDSATSRVVIEKQLKKLGCDVATAQDGNSGLAAMQDGEFDLVLLDCQMPDMSGYDV 71 ILVVDD R IE QL L C A G LA + FD+VLLDC +PD+ GY V Sbjct: 591 ILVVDDHEAVRHAIEHQLDALACGSTMADTGEHALAQFERATFDMVLLDCDLPDVDGYTV 650 Query: 72 AKIFRRREREEELAHTPIIAISAETDTAHMQLCLDSGMDGVLGKPLPVDDLKKMLSLWC- 130 + R ER++ A TPI+AISA T AH C DSGMDGVLGKPL +D L +M++LWC Sbjct: 651 VQRMRDIERDQNRARTPIVAISASTGDAHRARCFDSGMDGVLGKPLRLDALHQMINLWCP 710 Query: 131 --DVDVSAVAPMNIDDMRSVDLTTLFRTTSLEDFAVLQTAMAEADMASVGRLAHRMKGAA 188 D D V P+ D T++R + D A L A++ D AHR+KGAA Sbjct: 711 TADAD-EPVPPVPDRQPAKADFGTIYRQSVDADLAALDDALSNDDADRARHAAHRIKGAA 769 Query: 189 LT---IAAVDIVATLERIEAIAVSRMPSA 214 A + A LER A MP + Sbjct: 770 AIAGHTATSERAAELERRLQFASGGMPPS 798 >ref|NP_902070.1| sensor protein evgS [Chromobacterium violaceum ATCC 12472] gb|AAQ60072.1| sensor protein evgS precursor [Chromobacterium violaceum ATCC 12472] Length = 787 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 73/198 (36%), Positives = 112/198 (56%), Gaps = 10/198 (5%) Query: 12 ILVVDDSATSRVVIEKQLKKLGCDVATAQDGNSGLAAM-QDGEFDLVLLDCQMPDMSGYD 70 ILVV+D +R VI +QL+ LG A+D + LA + Q G F +VLLDC +P + GY+ Sbjct: 564 ILVVEDQPANRFVIGQQLETLGFRSVMAEDAPAALALLDQGGRFSMVLLDCNLPGIDGYE 623 Query: 71 VAKIFRRREREEELAHTPIIAISAETDTAHMQLCLDSGMDGVLGKPLPVDDLKKMLSLWC 130 +A+ R+ + + PI+AISA T H Q CL+SGMD L KPL + L+ +L+LW Sbjct: 624 LARRLRQHPALQWQPYLPIVAISATTGIEHQQRCLESGMDSCLSKPLQLAQLENILALWL 683 Query: 131 DV----DVSAVAPMNIDDMRSVDLTTLFRTTSLEDFAVLQTAMAEADMASVGRLAHRMKG 186 D +V A ++ + +V FR ++ ED + A+++ D AHR+ G Sbjct: 684 DHHPAGEVHESAAIHGESFDAV-----FRRSAGEDVSRFGLALSQGDWKQADHYAHRLHG 738 Query: 187 AALTIAAVDIVATLERIE 204 AAL+ ++ AT ER++ Sbjct: 739 AALSAGRSELAATAERMQ 756