BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0022.p (499 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAC32391.2| transcriptional activator NtrC [Herbaspirillum se... 885 0.0 ref|YP_003776517.1| nitrogen assimilation transcription activato... 884 0.0 emb|CAL61134.2| Nitrogen regulation protein NR(I) [Herminiimonas... 836 0.0 ref|YP_001352771.1| nitrogen regulation protein NR(I) [Janthinob... 805 0.0 ref|ZP_08273339.1| Nitrogen regulation protein NR(I) [Oxalobacte... 801 0.0 >gb|AAC32391.2| transcriptional activator NtrC [Herbaspirillum seropedicae] Length = 500 Score = 885 bits (2288), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/500 (88%), Positives = 465/500 (93%), Gaps = 1/500 (0%) Query: 1 MKPIWIVDDDESIRWVLEKALARENLATQSFSSARDAMQALESGTPQVLVSDIRMPGASG 60 MKPIWIVDDDESIRWVLEKALARENLATQSFSSARDA+ AL++GTPQVLVSDIRMPGASG Sbjct: 1 MKPIWIVDDDESIRWVLEKALARENLATQSFSSARDAIAALQNGTPQVLVSDIRMPGASG 60 Query: 61 LELLQTIKAKHPGIPVIIITAFSDLDSAVSAFQGGAFEYLAKPFDVDKAVELIRRALEES 120 LELLQT+KAKHPGIPVIIITAFSDLDSAVSAFQGGAFEYLAKPFDVDKAVELIRRAL+ES Sbjct: 61 LELLQTVKAKHPGIPVIIITAFSDLDSAVSAFQGGAFEYLAKPFDVDKAVELIRRALDES 120 Query: 121 LRETDVEQSSANAPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVARALHKH 180 LRETD+EQ +A PEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVARALHKH Sbjct: 121 LRETDIEQGAAQTPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVARALHKH 180 Query: 181 SPRAAQPFVALNTAAIPKDLLESELFGHERGAFTGAQAMRRGRFEQAEGGTLFLDEIGDM 240 SPRA+QPFVALNTAAIPKDLLESELFGHERGAFTGAQAMRRGRFEQAEGGTLFLDEIGDM Sbjct: 181 SPRASQPFVALNTAAIPKDLLESELFGHERGAFTGAQAMRRGRFEQAEGGTLFLDEIGDM 240 Query: 241 PLDLQTRLLRVLSDGHFYRVGGHQSLKANVRVIAATHQNLEHRVREGLFREDLYHRLNVI 300 PLDLQTRLLRVLSDGHFYRVGGHQSLKANVRVIAATHQNLE RVREGLFREDLYHRLNVI Sbjct: 241 PLDLQTRLLRVLSDGHFYRVGGHQSLKANVRVIAATHQNLEQRVREGLFREDLYHRLNVI 300 Query: 301 RLRLPSLRERSEDIPILARHFLTQSARQLGVEAKRLSPQAMQFLSQLELPGNVRQLENLC 360 RLRLPSLRERSEDIPILAR+FL QSARQLGVEAKRLSPQAMQFLSQLE PGNVRQLENLC Sbjct: 301 RLRLPSLRERSEDIPILARYFLAQSARQLGVEAKRLSPQAMQFLSQLEFPGNVRQLENLC 360 Query: 361 NWITVMAPGQTVEVKDLPQDLIEERSSNFQPTHTHTHTTSSAAPAEA-HGGAGGGASYDS 419 NWITVMAPGQTVE+KDLPQDL+EER QP + +P++ + G AS + Sbjct: 361 NWITVMAPGQTVEIKDLPQDLVEERVHAPQPAQNRGCSGIGGSPSDGLYRACPGVASASA 420 Query: 420 DGGAERSWISLLETEAAQMLAEERPEVMDILGRQFEATLIKIALKHTHGRKNDAAVRLGI 479 DG A SWI+LLETEAAQMLA E+PEVMDILGRQFEA LIK+ALKHTHGRKNDAAVRLGI Sbjct: 421 DGAAGASWITLLETEAAQMLASEQPEVMDILGRQFEAALIKVALKHTHGRKNDAAVRLGI 480 Query: 480 GRNTITRKIQELGIGGAEDD 499 GRNTITRKIQ+LGIGGAEDD Sbjct: 481 GRNTITRKIQKLGIGGAEDD 500 >ref|YP_003776517.1| nitrogen assimilation transcription activator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64609.1| nitrogen assimilation transcription activator protein [Herbaspirillum seropedicae SmR1] Length = 500 Score = 884 bits (2285), Expect = 0.0, Method: Compositional matrix adjust. Identities = 450/500 (90%), Positives = 467/500 (93%), Gaps = 1/500 (0%) Query: 1 MKPIWIVDDDESIRWVLEKALARENLATQSFSSARDAMQALESGTPQVLVSDIRMPGASG 60 MKPIWIVDDDESIRWVLEKALARENLATQSFSSARDA+ AL++GTPQVLVSDIRMPGASG Sbjct: 1 MKPIWIVDDDESIRWVLEKALARENLATQSFSSARDAIAALQNGTPQVLVSDIRMPGASG 60 Query: 61 LELLQTIKAKHPGIPVIIITAFSDLDSAVSAFQGGAFEYLAKPFDVDKAVELIRRALEES 120 LELLQT+KAKHPGIPVIIITAFSDLDSAVSAFQGGAFEYLAKPFDVDKAVELIRRAL+ES Sbjct: 61 LELLQTVKAKHPGIPVIIITAFSDLDSAVSAFQGGAFEYLAKPFDVDKAVELIRRALDES 120 Query: 121 LRETDVEQSSANAPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVARALHKH 180 LRETD+EQ +A PEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVARALHKH Sbjct: 121 LRETDIEQGAAQTPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVARALHKH 180 Query: 181 SPRAAQPFVALNTAAIPKDLLESELFGHERGAFTGAQAMRRGRFEQAEGGTLFLDEIGDM 240 SPRA+QPFVALNTAAIPKDLLESELFGHERGAFTGAQAMRRGRFEQAEGGTLFLDEIGDM Sbjct: 181 SPRASQPFVALNTAAIPKDLLESELFGHERGAFTGAQAMRRGRFEQAEGGTLFLDEIGDM 240 Query: 241 PLDLQTRLLRVLSDGHFYRVGGHQSLKANVRVIAATHQNLEHRVREGLFREDLYHRLNVI 300 PLDLQTRLLRVLSDGHFYRVGGHQSLKANVRVIAATHQNLE RVREGLFREDLYHRLNVI Sbjct: 241 PLDLQTRLLRVLSDGHFYRVGGHQSLKANVRVIAATHQNLEQRVREGLFREDLYHRLNVI 300 Query: 301 RLRLPSLRERSEDIPILARHFLTQSARQLGVEAKRLSPQAMQFLSQLELPGNVRQLENLC 360 RLRLPSLRERSEDIPILAR+FL QSARQLGVEAKRLSPQAMQFLSQLE PGNVRQLENLC Sbjct: 301 RLRLPSLRERSEDIPILARYFLAQSARQLGVEAKRLSPQAMQFLSQLEFPGNVRQLENLC 360 Query: 361 NWITVMAPGQTVEVKDLPQDLIEERSSNFQPTHTHTHTTSSAAPAEAHG-GAGGGASYDS 419 NWITVMAPGQTVE+KDLPQDL+EER QP T S+AA A+ A G AS + Sbjct: 361 NWITVMAPGQTVEIKDLPQDLVEERVHAPQPAQTVAAPASAAALPTAYTEPAPGVASASA 420 Query: 420 DGGAERSWISLLETEAAQMLAEERPEVMDILGRQFEATLIKIALKHTHGRKNDAAVRLGI 479 DG A SWI+LLETEAAQMLA E+PEVMDILGRQFEA LIK+ALKHTHGRKNDAAVRLGI Sbjct: 421 DGAAGASWITLLETEAAQMLASEQPEVMDILGRQFEAALIKVALKHTHGRKNDAAVRLGI 480 Query: 480 GRNTITRKIQELGIGGAEDD 499 GRNTITRKIQELGIGGAEDD Sbjct: 481 GRNTITRKIQELGIGGAEDD 500 >emb|CAL61134.2| Nitrogen regulation protein NR(I) [Herminiimonas arsenicoxydans] Length = 510 Score = 836 bits (2160), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/510 (81%), Positives = 447/510 (87%), Gaps = 11/510 (2%) Query: 1 MKPIWIVDDDESIRWVLEKALARENLATQSFSSARDAMQALESGTPQVLVSDIRMPGASG 60 MKPIWIVDDDESIRWVLEKALARENLATQSFS+ARDAM+AL++G PQVLVSDIRMPG +G Sbjct: 1 MKPIWIVDDDESIRWVLEKALARENLATQSFSNARDAMEALKTGAPQVLVSDIRMPGETG 60 Query: 61 LELLQTIKAKHPGIPVIIITAFSDLDSAVSAFQGGAFEYLAKPFDVDKAVELIRRALEES 120 LELLQ +KAKHPG+PVIIITAFSDLDSAV+AFQGGAFEYLAKPFD+DKAVELIRRALEES Sbjct: 61 LELLQAVKAKHPGLPVIIITAFSDLDSAVAAFQGGAFEYLAKPFDIDKAVELIRRALEES 120 Query: 121 LRETDVEQSSANAPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVARALHKH 180 LRET +EQ SA PEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVARALHKH Sbjct: 121 LRETSIEQVSAETPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVARALHKH 180 Query: 181 SPRAAQPFVALNTAAIPKDLLESELFGHERGAFTGAQAMRRGRFEQAEGGTLFLDEIGDM 240 SPRA+QPF+ALNTAAIPKDLLESELFGHERGAFTGAQA RRGRFEQA+GGTLFLDEIGDM Sbjct: 181 SPRASQPFIALNTAAIPKDLLESELFGHERGAFTGAQASRRGRFEQADGGTLFLDEIGDM 240 Query: 241 PLDLQTRLLRVLSDGHFYRVGGHQSLKANVRVIAATHQNLEHRVREGLFREDLYHRLNVI 300 P DLQTRLLRVLSDGHFYRVGGHQ LKANVRVIAATHQNLE RVREGLFREDLYHRLNVI Sbjct: 241 PFDLQTRLLRVLSDGHFYRVGGHQPLKANVRVIAATHQNLEQRVREGLFREDLYHRLNVI 300 Query: 301 RLRLPSLRERSEDIPILARHFLTQSARQLGVEAKRLSPQAMQFLSQLELPGNVRQLENLC 360 RLRLPSLRER EDIPIL RHFL QSA+QLGVE KR+S AMQFL+ LELPGNVRQLENLC Sbjct: 301 RLRLPSLRERREDIPILTRHFLAQSAKQLGVEVKRMSDGAMQFLTNLELPGNVRQLENLC 360 Query: 361 NWITVMAPGQTVEVKDLPQDLIEER--SSNFQPTHTHTHTTSSAAP---AEAHGGAGGGA 415 NWITVMAPGQTVE KDLP +L E + S++ Q H S P A GG + Sbjct: 361 NWITVMAPGQTVEAKDLPHELTEGQAFSASGQAGANAVHGISYTTPESDAMTLGGMTQTS 420 Query: 416 SYDSDGGA------ERSWISLLETEAAQMLAEERPEVMDILGRQFEATLIKIALKHTHGR 469 S+ + GGA SWI+LLE EAA +LA +PEVMD LGRQFE+TLIK+ALKHTHGR Sbjct: 421 SFPNAGGAASAPLESSSWIALLEMEAASLLAAGKPEVMDALGRQFESTLIKMALKHTHGR 480 Query: 470 KNDAAVRLGIGRNTITRKIQELGIGGAEDD 499 KNDAAVRLGIGRNTITRKI ELGI GA+DD Sbjct: 481 KNDAAVRLGIGRNTITRKIHELGIDGAKDD 510 >ref|YP_001352771.1| nitrogen regulation protein NR(I) [Janthinobacterium sp. Marseille] gb|ABR89175.1| nitrogen regulation protein NR(I) [Janthinobacterium sp. Marseille] Length = 506 Score = 805 bits (2079), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/509 (81%), Positives = 444/509 (87%), Gaps = 13/509 (2%) Query: 1 MKPIWIVDDDESIRWVLEKALARENLATQSFSSARDAMQALESGTPQVLVSDIRMPGASG 60 MKPIWIVDDDESIRWVLEKALARENLAT+SFS+ARDA++AL++G PQVLVSDIRMPG SG Sbjct: 1 MKPIWIVDDDESIRWVLEKALARENLATKSFSNARDALEALKTGAPQVLVSDIRMPGESG 60 Query: 61 LELLQTIKAKHPGIPVIIITAFSDLDSAVSAFQGGAFEYLAKPFDVDKAVELIRRALEES 120 LELLQ +KAKHPG+PVIIITAFSDLDSAV+AFQGGAFEYLAKPFD+D AV LIRRALEES Sbjct: 61 LELLQAVKAKHPGLPVIIITAFSDLDSAVAAFQGGAFEYLAKPFDIDHAVGLIRRALEES 120 Query: 121 LRETDVEQSSANAPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVARALHKH 180 LRET VEQ SA PEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVARALHKH Sbjct: 121 LRETSVEQVSAETPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVARALHKH 180 Query: 181 SPRAAQPFVALNTAAIPKDLLESELFGHERGAFTGAQAMRRGRFEQAEGGTLFLDEIGDM 240 SPRA+QPF+ALNTAAIPKDLLESELFGHERGAFTGAQA RRGRFEQAE GTLFLDEIGDM Sbjct: 181 SPRASQPFIALNTAAIPKDLLESELFGHERGAFTGAQATRRGRFEQAENGTLFLDEIGDM 240 Query: 241 PLDLQTRLLRVLSDGHFYRVGGHQSLKANVRVIAATHQNLEHRVREGLFREDLYHRLNVI 300 P DLQTRLLRVLSDGHFYRVGGHQ LKANVRVIAATHQNLEHRVREGLFREDLYHRLNVI Sbjct: 241 PFDLQTRLLRVLSDGHFYRVGGHQPLKANVRVIAATHQNLEHRVREGLFREDLYHRLNVI 300 Query: 301 RLRLPSLRERSEDIPILARHFLTQSARQLGVEAKRLSPQAMQFLSQLELPGNVRQLENLC 360 RLRLPSLRER EDIPIL RHFL QSA+QLGVE KR+S AMQFLS LELPGNVRQLENLC Sbjct: 301 RLRLPSLRERREDIPILTRHFLQQSAKQLGVEVKRMSDSAMQFLSSLELPGNVRQLENLC 360 Query: 361 NWITVMAPGQTVEVKDLPQDLIEER------SSNF---QP-THTHTHTTSSAAPAEAHGG 410 NWITVMAPGQTVE KDLP +L E + S +F QP H++ T +A+P +G Sbjct: 361 NWITVMAPGQTVEAKDLPHELTEGQAFAASASGSFPGSQPAAHSYATTDEAASP---NGA 417 Query: 411 AGGGASYDSDGGAERSWISLLETEAAQMLAEERPEVMDILGRQFEATLIKIALKHTHGRK 470 A +WI+LLETEAA +LA +PEVMD LGRQFE+TLIK ALKHTHGRK Sbjct: 418 PPSMAFAAPAPAEPGNWITLLETEAAALLAAGQPEVMDALGRQFESTLIKTALKHTHGRK 477 Query: 471 NDAAVRLGIGRNTITRKIQELGIGGAEDD 499 NDAAVRLGIGRNTITRKI ELGI GA+DD Sbjct: 478 NDAAVRLGIGRNTITRKIHELGIDGAKDD 506 >ref|ZP_08273339.1| Nitrogen regulation protein NR(I) [Oxalobacteraceae bacterium IMCC9480] gb|EGF33190.1| Nitrogen regulation protein NR(I) [Oxalobacteraceae bacterium IMCC9480] Length = 499 Score = 801 bits (2068), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/503 (80%), Positives = 436/503 (86%), Gaps = 8/503 (1%) Query: 1 MKPIWIVDDDESIRWVLEKALARENLATQSFSSARDAMQALESGTPQVLVSDIRMPGASG 60 MKPIWIVDDDESIRWVLEKALARENLAT+SFS+ARDA AL+ TPQVLVSDIRMPG SG Sbjct: 1 MKPIWIVDDDESIRWVLEKALARENLATRSFSNARDANDALQHDTPQVLVSDIRMPGGSG 60 Query: 61 LELLQTIKAKHPGIPVIIITAFSDLDSAVSAFQGGAFEYLAKPFDVDKAVELIRRALEES 120 LELLQT+K K+PG+PVIIITAFSDLDSAV+AFQGGAFEYLAKPFD++KAVELIRRAL+ES Sbjct: 61 LELLQTVKTKYPGLPVIIITAFSDLDSAVAAFQGGAFEYLAKPFDLEKAVELIRRALDES 120 Query: 121 LRETDVEQSSANAPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVARALHKH 180 LRE VEQ+ A PEILGQAPAMQDVFRAIGRLSQSNVTVLITGESG+GKELVARALHKH Sbjct: 121 LREASVEQAPAETPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGTGKELVARALHKH 180 Query: 181 SPRAAQPFVALNTAAIPKDLLESELFGHERGAFTGAQAMRRGRFEQAEGGTLFLDEIGDM 240 SPRAAQPF+ALNTAAIPKDLLESELFGHERGAFTGAQA RRGRFEQAE GTLFLDEIGDM Sbjct: 181 SPRAAQPFIALNTAAIPKDLLESELFGHERGAFTGAQASRRGRFEQAENGTLFLDEIGDM 240 Query: 241 PLDLQTRLLRVLSDGHFYRVGGHQSLKANVRVIAATHQNLEHRVREGLFREDLYHRLNVI 300 P DLQTRLLRVLSDGHFYRVGGHQ +KANVRVIAATHQNLE RVREGLFREDLYHRLNVI Sbjct: 241 PFDLQTRLLRVLSDGHFYRVGGHQPMKANVRVIAATHQNLEQRVREGLFREDLYHRLNVI 300 Query: 301 RLRLPSLRERSEDIPILARHFLTQSARQLGVEAKRLSPQAMQFLSQLELPGNVRQLENLC 360 RLRLPSLRER EDIPIL R+FLTQSA+QLG +AKR++ AMQFL+ L+LPGNVRQLENLC Sbjct: 301 RLRLPSLRERREDIPILTRYFLTQSAKQLGGDAKRMTDGAMQFLTGLDLPGNVRQLENLC 360 Query: 361 NWITVMAPGQTVEVKDLPQDLIEERSSNFQPTHTHTHTTSSAAPAEAHGGAGGGASYDSD 420 NWITVMAPGQ+VEVKDLP+DLI+ S T S PA GAG S Sbjct: 361 NWITVMAPGQSVEVKDLPRDLIDGGSF----AAIATPQASVMTPASMPEGAGVVTQATSA 416 Query: 421 GGAE----RSWISLLETEAAQMLAEERPEVMDILGRQFEATLIKIALKHTHGRKNDAAVR 476 AE +W+ LLE EAA+MLA +P+VM LGR FE+ LIK ALKHTHGRKNDAA+R Sbjct: 417 PVAEAVDPETWVDLLEAEAARMLAAGQPDVMGTLGRLFESALIKTALKHTHGRKNDAAIR 476 Query: 477 LGIGRNTITRKIQELGIGGAEDD 499 LGIGRNTITRKIQELGI GA+D+ Sbjct: 477 LGIGRNTITRKIQELGIDGAKDE 499