BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0019.p (462 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001355176.1| propionate catabolism operon regulatory prot... 394 e-107 ref|YP_001101493.1| propionate catabolism transcriptional activa... 390 e-106 ref|YP_003776513.1| propionate catabolism operon regulatory prot... 344 2e-92 ref|ZP_08274242.1| Propionate catabolism operon regulatory prote... 342 1e-91 ref|YP_004754182.1| propionate catabolism operon regulatory prot... 338 1e-90 >ref|YP_001355176.1| propionate catabolism operon regulatory protein [Janthinobacterium sp. Marseille] gb|ABR90830.1| propionate catabolism operon regulatory protein [Janthinobacterium sp. Marseille] Length = 543 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 192/225 (85%), Positives = 207/225 (92%) Query: 1 MKRPPFSSRDNPDKPVIWTVSVSRLVELFRDITLEFDDRADIEPIPLGFEDAVRHIRERL 60 MKRP RDN DKPVIWTVS+SRL ELFRDITLEFD++ADIEPI LGFEDAVRHIRERL Sbjct: 1 MKRPSSPFRDNADKPVIWTVSISRLFELFRDITLEFDEQADIEPIHLGFEDAVRHIRERL 60 Query: 61 ATEHCDAVIAAGSNGAYLKSRLSVPVIIAKASGFDVMQALAKARKISPDIGMITYQETMP 120 ATE CDAVIAAGSNGAYLKSRLSVPVIIAKASGFDVMQALA+ARKI+PDIG++TYQETMP Sbjct: 61 ATERCDAVIAAGSNGAYLKSRLSVPVIIAKASGFDVMQALARARKITPDIGLVTYQETMP 120 Query: 121 SLVEFQNTFGLNIVQRTYATEEDARSQINELKAAGIKAIVGAGLITGLAQEAGLAGIFVY 180 +L EFQ TFGLNI QRTY TEEDAR+QINELK AGIKAIVGAGLIT LA+EAGL GIFVY Sbjct: 121 ALAEFQTTFGLNIAQRTYVTEEDARAQINELKTAGIKAIVGAGLITDLAEEAGLTGIFVY 180 Query: 181 SAASIRQAFDDALELARLTQLESTRGRILPVADTLRARHHLNDLR 225 S+ASIRQAF+DALELARLTQLE+TRGR PVADTLRA+HH+ DLR Sbjct: 181 SSASIRQAFEDALELARLTQLEATRGRSFPVADTLRAKHHIKDLR 225 Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 179/241 (74%), Positives = 196/241 (81%), Gaps = 14/241 (5%) Query: 226 SRRGGRAGLFEAAHRGTLLLDEIGEMPLPLQTRLLRVLEEREVVRVGGTRPIPVNVRIIS 285 SRRGGRAGLFEAAHRGTL LDEIGEMPL LQTRLLRVLEEREVVRVGGTRPIPV+VRIIS Sbjct: 310 SRRGGRAGLFEAAHRGTLFLDEIGEMPLSLQTRLLRVLEEREVVRVGGTRPIPVSVRIIS 369 Query: 286 ATHCDLDARVRDGRFRADLFYRLSVLRMTLPPLRERPDDLAPLAEWCLKNALAAMDIRPH 345 ATHCDLDARVR+GRFRADLFYRLSVLR++LPPLRER +D+A LAEW LKNALA++D+RP Sbjct: 370 ATHCDLDARVREGRFRADLFYRLSVLRLSLPPLRERQEDVAALAEWYLKNALASLDVRPP 429 Query: 346 ANLHAEILRCTPLLARYRWPGNVRELRNMMERLALFLAAEPLQALTPNLIGRIAPE---- 401 ANL AE+L C PLL YRWPGNVRELRN+MERLALFLAA PLQALTP + IAPE Sbjct: 430 ANLQAELLTCLPLLLAYRWPGNVRELRNLMERLALFLAAAPLQALTPAFLKSIAPELSGV 489 Query: 402 ILRDDVSTTTAPVASVLRAAHADTDESLQDVLARFDGNRTAAASYLGISRTTLWRRLGEK 461 I RD + PV + E+LQ VL R GNR AAA+YLGISRTTLWRRL + Sbjct: 490 IARDAAVSHEPPVEA----------ETLQQVLLRHHGNREAAANYLGISRTTLWRRLQAE 539 Query: 462 N 462 N Sbjct: 540 N 540 >ref|YP_001101493.1| propionate catabolism transcriptional activator [Herminiimonas arsenicoxydans] emb|CAL63372.1| Propionate catabolism operon regulatory protein [Herminiimonas arsenicoxydans] Length = 550 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 193/245 (78%), Positives = 215/245 (87%), Gaps = 4/245 (1%) Query: 1 MKRPPFSSRDNPDKPVIWTVSVSRLVELFRDITLEFDDRADIEPIPLGFEDAVRHIRERL 60 MKR RDN DKPVIWTVS+SRL ELFRDITLEFDD+ADIEPI LGFEDAVRHIRERL Sbjct: 1 MKRSSSPFRDNADKPVIWTVSISRLFELFRDITLEFDDQADIEPIHLGFEDAVRHIRERL 60 Query: 61 ATEHCDAVIAAGSNGAYLKSRLSVPVIIAKASGFDVMQALAKARKISPDIGMITYQETMP 120 ATE CDAVIAAGSNGAYLKSRLSVPVIIAKASGFDVMQALA+ARKI+PDIG+ITYQETMP Sbjct: 61 ATERCDAVIAAGSNGAYLKSRLSVPVIIAKASGFDVMQALARARKITPDIGLITYQETMP 120 Query: 121 SLVEFQNTFGLNIVQRTYATEEDARSQINELKAAGIKAIVGAGLITGLAQEAGLAGIFVY 180 +L EFQ TFGL+I QRTY TEEDAR+QINELK+AGIKAIVGAGLIT LA+EAGL+G+FVY Sbjct: 121 ALAEFQATFGLHIAQRTYVTEEDARAQINELKSAGIKAIVGAGLITDLAEEAGLSGVFVY 180 Query: 181 SAASIRQAFDDALELARLTQLESTRGRILPVADTLRARHHLNDLRSRRGGRAGLFEAAHR 240 S+ASIRQAF+DALELARLTQLE+TRGR PVADTLRA+HH+ D+R G + + E+ + Sbjct: 181 SSASIRQAFEDALELARLTQLEATRGRSFPVADTLRAKHHIKDVR----GESAVMESVRQ 236 Query: 241 GTLLL 245 L Sbjct: 237 SITLF 241 Score = 327 bits (837), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 181/233 (77%), Positives = 196/233 (84%), Gaps = 3/233 (1%) Query: 226 SRRGGRAGLFEAAHRGTLLLDEIGEMPLPLQTRLLRVLEEREVVRVGGTRPIPVNVRIIS 285 SRRGGRAGLFEAAHRGTL LDEIGEMPL LQTRLLRVLEEREVVRVGGTRPIPV+VRIIS Sbjct: 310 SRRGGRAGLFEAAHRGTLFLDEIGEMPLSLQTRLLRVLEEREVVRVGGTRPIPVSVRIIS 369 Query: 286 ATHCDLDARVRDGRFRADLFYRLSVLRMTLPPLRERPDDLAPLAEWCLKNALAAMDIRPH 345 ATHCDLDARVR+GRFRADLFYRLSVLR++LPPLR+RP+D+ L EW LK+ALA++D+RPH Sbjct: 370 ATHCDLDARVREGRFRADLFYRLSVLRLSLPPLRQRPEDVPALTEWYLKSALASLDVRPH 429 Query: 346 ANLHAEILRCTPLLARYRWPGNVRELRNMMERLALFLAAEPLQALTPNLIGRIAPEILRD 405 ANLHAEI C PLLA Y WPGNVRELRN+MERLALFLAA PLQALTP + IAPE L Sbjct: 430 ANLHAEISTCMPLLASYAWPGNVRELRNLMERLALFLAAAPLQALTPAFLKNIAPE-LSA 488 Query: 406 DVSTTTAPVASVLRAAHADTDESLQDVLARFDGNRTAAASYLGISRTTLWRRL 458 VS A VAS A T E+LQ VL R GNR AAA+YLGISRTTLWRRL Sbjct: 489 SVSDAIA-VASQDVLAQEQT-ETLQQVLQRHHGNREAAANYLGISRTTLWRRL 539 >ref|YP_003776513.1| propionate catabolism operon regulatory protein [Herbaspirillum seropedicae SmR1] gb|ADJ64605.1| propionate catabolism operon regulatory protein [Herbaspirillum seropedicae SmR1] Length = 544 Score = 344 bits (883), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 176/249 (70%), Positives = 197/249 (79%), Gaps = 27/249 (10%) Query: 226 SRRGGRAGLFEAAHRGTLLLDEIGEMPLPLQTRLLRVLEEREVVRVGGTRPIPVNVRIIS 285 SRRGGRAG+FEAAHRGTLLLDEIGEMPLPLQTRLLRVLEEREVVRVGGTRPIPV VRIIS Sbjct: 309 SRRGGRAGVFEAAHRGTLLLDEIGEMPLPLQTRLLRVLEEREVVRVGGTRPIPVQVRIIS 368 Query: 286 ATHCDLDARVRDGRFRADLFYRLSVLRMTLPPLRERPDDLAPLAEWCLKNALAAMDIRPH 345 ATHCDL ARVR+GRFRADL+YRLSVL + LPPLRER DD+A LAEW LK+ALAA+D+RPH Sbjct: 369 ATHCDLQARVREGRFRADLYYRLSVLCLQLPPLRERRDDIAALAEWHLKHALAALDVRPH 428 Query: 346 ANLHAEILRCTPLLARYRWPGNVRELRNMMERLALFLAAEPLQALTPNLIGRIAPEI--- 402 ANL AEI+RC PLL RY WPGNVRELRN+MERLALFLAAEPLQALTP LI R+APE+ Sbjct: 429 ANLGAEIVRCAPLLCRYDWPGNVRELRNLMERLALFLAAEPLQALTPALIQRVAPELGQA 488 Query: 403 ---------LRDDVSTTTAPVASVLRAAHADTDESLQDVLARFDGNRTAAASYLGISRTT 453 +++++ A +A+ LR RF GNR AAA YLG+SRTT Sbjct: 489 PPSPAAPDEAQENITPDNASIAAALR---------------RFRGNRAAAARYLGMSRTT 533 Query: 454 LWRRLGEKN 462 LWR+L E Sbjct: 534 LWRKLKESG 542 Score = 341 bits (875), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 172/226 (76%), Positives = 195/226 (86%), Gaps = 1/226 (0%) Query: 1 MKRPPFSSRDNPDKPVIWTVSVSRLVELFRDITLEFDDRADIEPIPLGFEDAVRHIRERL 60 MKRP R + DKPVIWTVSVSRL ELFRDITLEFD ADIEPI LGF+DAVR IRERL Sbjct: 1 MKRPAPVDR-HADKPVIWTVSVSRLSELFRDITLEFDALADIEPIHLGFDDAVREIRERL 59 Query: 61 ATEHCDAVIAAGSNGAYLKSRLSVPVIIAKASGFDVMQALAKARKISPDIGMITYQETMP 120 ATE CD VI+AGSNGAYLKSRL VPVI+A+ASGFDVMQALA+AR+++ I ++TYQE MP Sbjct: 60 ATERCDVVISAGSNGAYLKSRLPVPVIVARASGFDVMQALARARQLTRRIALVTYQEAMP 119 Query: 121 SLVEFQNTFGLNIVQRTYATEEDARSQINELKAAGIKAIVGAGLITGLAQEAGLAGIFVY 180 +L EF FGL IVQRTYATEEDAR+ +NELKAAGI+A+ GAGLIT LA+EAG+ GIF+Y Sbjct: 120 ALAEFGQRFGLEIVQRTYATEEDARAVVNELKAAGIEAVAGAGLITDLAEEAGMRGIFLY 179 Query: 181 SAASIRQAFDDALELARLTQLESTRGRILPVADTLRARHHLNDLRS 226 SAA++RQAF+DALELARLTQLESTR ILPVAD+LRARHHL DLR Sbjct: 180 SAATVRQAFEDALELARLTQLESTRSPILPVADSLRARHHLKDLRG 225 >ref|ZP_08274242.1| Propionate catabolism operon regulatory protein PrpR [Oxalobacteraceae bacterium IMCC9480] gb|EGF32290.1| Propionate catabolism operon regulatory protein PrpR [Oxalobacteraceae bacterium IMCC9480] Length = 532 Score = 342 bits (876), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 173/233 (74%), Positives = 193/233 (82%), Gaps = 8/233 (3%) Query: 226 SRRGGRAGLFEAAHRGTLLLDEIGEMPLPLQTRLLRVLEEREVVRVGGTRPIPVNVRIIS 285 SRRGG AGLFEAA GTL LDEIGEM LPLQTRLLRVLEEREVVRVGGTRPIPV+VRI+S Sbjct: 305 SRRGGHAGLFEAAQHGTLFLDEIGEMALPLQTRLLRVLEEREVVRVGGTRPIPVDVRIVS 364 Query: 286 ATHCDLDARVRDGRFRADLFYRLSVLRMTLPPLRERPDDLAPLAEWCLKNALAAMDIRPH 345 ATHCDLD R+++GRFR DLFYRL VLRMTLPPLRERPDD LA WCLKNALAAM +RPH Sbjct: 365 ATHCDLDLRMQEGRFRPDLFYRLGVLRMTLPPLRERPDDQVELAGWCLKNALAAMGLRPH 424 Query: 346 ANLHAEILRCTPLLARYRWPGNVRELRNMMERLALFLAAEPLQALTPNLIGRIAPEILRD 405 ANL AE+ C+ LLA Y WPGNVRELRNMMER+AL+LAAEPLQAL+P L+ +APE++R Sbjct: 425 ANLQAELQACSTLLAGYGWPGNVRELRNMMERVALYLAAEPLQALSPGLLLAVAPELMR- 483 Query: 406 DVSTTTAPVASVLRAAHADTDESLQDVLARFDGNRTAAASYLGISRTTLWRRL 458 + AP+ VL A ESL +VLARFDGNR AAA YLG+SRTTLWR+L Sbjct: 484 --AGAVAPM--VLSTA---PTESLTEVLARFDGNREAAAKYLGVSRTTLWRKL 529 Score = 337 bits (865), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 171/227 (75%), Positives = 194/227 (85%), Gaps = 1/227 (0%) Query: 1 MKRPPFSSRDNP-DKPVIWTVSVSRLVELFRDITLEFDDRADIEPIPLGFEDAVRHIRER 59 M RP + +P DKPVIWTVS+SRL +LFRDI LE+ D A IEPI LGFEDAVRHIRER Sbjct: 1 MHRPNLPASIDPNDKPVIWTVSISRLFDLFRDIMLEYGDAATIEPINLGFEDAVRHIRER 60 Query: 60 LATEHCDAVIAAGSNGAYLKSRLSVPVIIAKASGFDVMQALAKARKISPDIGMITYQETM 119 L E CDAVIAAGSN AYLKSRLSVPVIIAKASGFDVMQALA+ARKI+P IG+I+YQ+TM Sbjct: 61 LVNERCDAVIAAGSNAAYLKSRLSVPVIIAKASGFDVMQALARARKITPRIGLISYQQTM 120 Query: 120 PSLVEFQNTFGLNIVQRTYATEEDARSQINELKAAGIKAIVGAGLITGLAQEAGLAGIFV 179 L +FQ TFGL+IVQR+Y TEEDAR+QI+ELKAAGI+AIVGAGLIT LA+EAGLAG+FV Sbjct: 121 AELSDFQATFGLDIVQRSYVTEEDARAQISELKAAGIQAIVGAGLITDLAEEAGLAGVFV 180 Query: 180 YSAASIRQAFDDALELARLTQLESTRGRILPVADTLRARHHLNDLRS 226 YSAASIR AFDDAL++AR T+++S R R P ADTLRARH LNDLR Sbjct: 181 YSAASIRLAFDDALDIARFTRIDSNRRRPTPPADTLRARHGLNDLRG 227 >ref|YP_004754182.1| propionate catabolism operon regulatory protein prpR [Collimonas fungivorans Ter331] gb|AEK63359.1| Propionate catabolism operon regulatory protein PrpR [Collimonas fungivorans Ter331] Length = 549 Score = 338 bits (867), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 177/233 (75%), Positives = 202/233 (86%), Gaps = 9/233 (3%) Query: 1 MKRPPFSS--RDNPDKPVIWTVSVSRLVELFRDITLEFDDRADIEPIPLGFEDAVRHIRE 58 M RP SS RDN D PVIWTVSVSRL +LFRDITLEFD +A+I PI LGFEDAV+HIRE Sbjct: 1 MARPLHSSSNRDN-DLPVIWTVSVSRLFDLFRDITLEFDHQANIAPIQLGFEDAVQHIRE 59 Query: 59 RLATEHCDAVIAAGSNGAYLKSRLSVPVIIAKASGFDVMQALAKARKISPDIGMITYQET 118 RLATE CDAVIAAGSNGAYLKSRLSVPVIIAKASGFDVMQALA+AR+I+P +G+ITYQ + Sbjct: 60 RLATERCDAVIAAGSNGAYLKSRLSVPVIIAKASGFDVMQALARARRITPRVGVITYQAS 119 Query: 119 MPSLVEFQNTFGLNIVQRTYATEEDARSQINELKAAGIKAIVGAGLITGLAQEAGLAGIF 178 MP+L EFQ F L+I QR+YATEEDAR+Q+N+LKA+GIKAIVGAGLIT LA+EAGL+GIF Sbjct: 120 MPALAEFQAAFDLSIEQRSYATEEDARAQVNDLKASGIKAIVGAGLITDLAEEAGLSGIF 179 Query: 179 VYSAASIRQAFDDALELARLT--QLESTRGRILPVA----DTLRARHHLNDLR 225 VYSAASIRQAF+DALELARL+ QLEST GR P + DTLRA+H ++DLR Sbjct: 180 VYSAASIRQAFNDALELARLSQLQLESTGGRSYPASYSENDTLRAKHGISDLR 232 Score = 333 bits (855), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 166/237 (70%), Positives = 188/237 (79%), Gaps = 8/237 (3%) Query: 226 SRRGGRAGLFEAAHRGTLLLDEIGEMPLPLQTRLLRVLEEREVVRVGGTRPIPVNVRIIS 285 SRRGGRAGLFEAAHRGTL LDEIGEMPL LQTRLLRVLEEREVVRVG TRPI V+VRIIS Sbjct: 319 SRRGGRAGLFEAAHRGTLFLDEIGEMPLALQTRLLRVLEEREVVRVGSTRPIAVDVRIIS 378 Query: 286 ATHCDLDARVRDGRFRADLFYRLSVLRMTLPPLRERPDDLAPLAEWCLKNALAAMDIRPH 345 ATHCDL+ RVRDGRFRADLFYR+ VLR+ LPPLR RPDDL LAEWCLK ALA++D+RPH Sbjct: 379 ATHCDLEERVRDGRFRADLFYRIGVLRLNLPPLRARPDDLVALAEWCLKQALASLDVRPH 438 Query: 346 ANLHAEILRCTPLLARYRWPGNVRELRNMMERLALFLAAEPLQALTPNLIGRIAPEILRD 405 ANLHAE++ C PLL Y WPGNVRELRN+MER+ALFL+AEPL+++TP + APE+ Sbjct: 439 ANLHAEVVACAPLLESYAWPGNVRELRNVMERVALFLSAEPLRSMTPAFLLAAAPELATG 498 Query: 406 DVSTTTAPVASVLRAAHADTDESLQDVLARFDGNRTAAASYLGISRTTLWRRLGEKN 462 + A + ES VLARFDGNR AAA YLG+SRTTLWR+L E+ Sbjct: 499 AAALPAAVAPA--------VVESAAQVLARFDGNRAAAAQYLGVSRTTLWRKLREQQ 547