BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0017.p (386 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776511.1| methylcitrate synthase [Herbaspirillum serop... 763 0.0 ref|YP_004754180.1| 2-methylcitrate synthase [Collimonas fungivo... 762 0.0 ref|YP_001355178.1| methylcitrate synthase [Janthinobacterium sp... 751 0.0 ref|YP_004686318.1| 2-methylcitrate synthase PrpC [Cupriavidus n... 725 0.0 ref|YP_296535.1| methylcitrate synthase [Ralstonia eutropha JMP1... 725 0.0 >ref|YP_003776511.1| methylcitrate synthase [Herbaspirillum seropedicae SmR1] gb|ADJ64603.1| methylcitrate synthase (Citrate synthase 2) protein [Herbaspirillum seropedicae SmR1] Length = 384 Score = 763 bits (1970), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/386 (95%), Positives = 373/386 (96%), Gaps = 2/386 (0%) Query: 1 MSEPQAPATGFKPKKSVALSGVTAGNTALCTVGKTGNDLHYRGYDILDVADSCEFEEIAH 60 MSE QA GFKPKKSVALSGVTAGNTALCTVGKTGNDLHYRGYDILDVADSCEFEEIAH Sbjct: 1 MSEQQA--AGFKPKKSVALSGVTAGNTALCTVGKTGNDLHYRGYDILDVADSCEFEEIAH 58 Query: 61 LLVHGKLPTAAELKAYKAKLKALRGLPANVKAALEWLPAASHPMDVMRTGVSALGCVLPE 120 LLVHGKLPTAAEL+AYKAKLK+LRGLPANVKAALEWLPAASHPMDVMRTGVSALGCVLPE Sbjct: 59 LLVHGKLPTAAELRAYKAKLKSLRGLPANVKAALEWLPAASHPMDVMRTGVSALGCVLPE 118 Query: 121 KDDHNTPGARDIADRLMASLGSMLLYWYHYSQNGKRIEVETDDESIGGHFLHLLHGEKPS 180 KDDHNTPGARDIADRLMASLGSMLLYWYHYS NG RIEVETDD+SIG HFLHLLHGEKPS Sbjct: 119 KDDHNTPGARDIADRLMASLGSMLLYWYHYSHNGNRIEVETDDDSIGAHFLHLLHGEKPS 178 Query: 181 ELWEKAMHTSLILYAEHEFNASTFASRVIAGTGSDMYSAITGGIGALRGPKHGGANEVAF 240 E WEKAMHTSLILYAEHEFNASTF RVIAGTGSDMYSAITG IGALRGPKHGGANEVAF Sbjct: 179 EAWEKAMHTSLILYAEHEFNASTFTGRVIAGTGSDMYSAITGAIGALRGPKHGGANEVAF 238 Query: 241 EIQKRYDNPDEAEADIKRRVENKEVVIGFGHPVYTISDPRNKVIKEVARKLSKDAGSVKM 300 EIQKRYDNPDEAEADI+RRVENKEVVIGFGHPVYTISDPRNKVIKEVARKLSK+AGS KM Sbjct: 239 EIQKRYDNPDEAEADIRRRVENKEVVIGFGHPVYTISDPRNKVIKEVARKLSKEAGSTKM 298 Query: 301 FDIAERLETVMWDIKKMFPNLDWFSAVSYHMMGVPTAMFTPLFVIARTSGWAAHIIEQRI 360 FDIAERLETVMWDIKKMFPNLDWFSAVSYHMMGVPTAMFTPLFVIARTSGWAAHIIEQRI Sbjct: 299 FDIAERLETVMWDIKKMFPNLDWFSAVSYHMMGVPTAMFTPLFVIARTSGWAAHIIEQRI 358 Query: 361 DNKIIRPSANYVGPEDLKFVPIGKRK 386 DNKIIRPSANYVGPEDLKFVPI KRK Sbjct: 359 DNKIIRPSANYVGPEDLKFVPISKRK 384 >ref|YP_004754180.1| 2-methylcitrate synthase [Collimonas fungivorans Ter331] gb|AEK63357.1| 2-methylcitrate synthase [Collimonas fungivorans Ter331] Length = 386 Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/386 (94%), Positives = 373/386 (96%) Query: 1 MSEPQAPATGFKPKKSVALSGVTAGNTALCTVGKTGNDLHYRGYDILDVADSCEFEEIAH 60 MSE Q AT FKPKKSVALSGVTAGNTALCTVGKTGNDLHYRGYDILD+ADSCEFEEIAH Sbjct: 1 MSEQQPAATPFKPKKSVALSGVTAGNTALCTVGKTGNDLHYRGYDILDIADSCEFEEIAH 60 Query: 61 LLVHGKLPTAAELKAYKAKLKALRGLPANVKAALEWLPAASHPMDVMRTGVSALGCVLPE 120 LLVHGKLPT+AELKAYK KLKALRGLPANVKAALEWLPAASHPMDVMRTG SALGC+LPE Sbjct: 61 LLVHGKLPTSAELKAYKTKLKALRGLPANVKAALEWLPAASHPMDVMRTGASALGCILPE 120 Query: 121 KDDHNTPGARDIADRLMASLGSMLLYWYHYSQNGKRIEVETDDESIGGHFLHLLHGEKPS 180 KDDHN PGARDIADRLMASLGS+LLYWYHYS NGKRI+VETDDESIGGHFLHLLHGEKPS Sbjct: 121 KDDHNAPGARDIADRLMASLGSVLLYWYHYSHNGKRIDVETDDESIGGHFLHLLHGEKPS 180 Query: 181 ELWEKAMHTSLILYAEHEFNASTFASRVIAGTGSDMYSAITGGIGALRGPKHGGANEVAF 240 LWEKAMHTSLILYAEHEFNASTFA RVIAGTGSDMYSAITG IGALRGPKHGGANE AF Sbjct: 181 ALWEKAMHTSLILYAEHEFNASTFAGRVIAGTGSDMYSAITGAIGALRGPKHGGANEFAF 240 Query: 241 EIQKRYDNPDEAEADIKRRVENKEVVIGFGHPVYTISDPRNKVIKEVARKLSKDAGSVKM 300 EIQKRYDNPDEAEADIK+RVENKEVVIGFGHPVYTISDPRNKVIKEVAR LS+DAGS+KM Sbjct: 241 EIQKRYDNPDEAEADIKKRVENKEVVIGFGHPVYTISDPRNKVIKEVARSLSRDAGSLKM 300 Query: 301 FDIAERLETVMWDIKKMFPNLDWFSAVSYHMMGVPTAMFTPLFVIARTSGWAAHIIEQRI 360 FDIAERLETVMWDIKKMFPNLDWFSAVSYHMMGVPTAMFTPLFVIARTSGWAAHIIEQRI Sbjct: 301 FDIAERLETVMWDIKKMFPNLDWFSAVSYHMMGVPTAMFTPLFVIARTSGWAAHIIEQRI 360 Query: 361 DNKIIRPSANYVGPEDLKFVPIGKRK 386 DNKIIRPSANYVGPEDLKFVPIGKRK Sbjct: 361 DNKIIRPSANYVGPEDLKFVPIGKRK 386 >ref|YP_001355178.1| methylcitrate synthase [Janthinobacterium sp. Marseille] gb|ABR88900.1| 2-methylcitrate synthase [Janthinobacterium sp. Marseille] Length = 387 Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/387 (93%), Positives = 372/387 (96%), Gaps = 1/387 (0%) Query: 1 MSEPQA-PATGFKPKKSVALSGVTAGNTALCTVGKTGNDLHYRGYDILDVADSCEFEEIA 59 MSE QA PATGFKPKKSVALSGVTAGNTALCTVGKTGNDLHYRGYDILD+ADSCEFEEIA Sbjct: 1 MSESQATPATGFKPKKSVALSGVTAGNTALCTVGKTGNDLHYRGYDILDIADSCEFEEIA 60 Query: 60 HLLVHGKLPTAAELKAYKAKLKALRGLPANVKAALEWLPAASHPMDVMRTGVSALGCVLP 119 HLLVHGKLPTAAELKAYK KLK LRGLPANVKAALEWLPAASHPMDVMRTGVSALGCV+P Sbjct: 61 HLLVHGKLPTAAELKAYKIKLKELRGLPANVKAALEWLPAASHPMDVMRTGVSALGCVIP 120 Query: 120 EKDDHNTPGARDIADRLMASLGSMLLYWYHYSQNGKRIEVETDDESIGGHFLHLLHGEKP 179 EKDDHN PGARDIADRLMASLGS+LLYWYHYS NGKRIEVETDD+SIG HFLHLLHGEKP Sbjct: 121 EKDDHNAPGARDIADRLMASLGSILLYWYHYSHNGKRIEVETDDDSIGAHFLHLLHGEKP 180 Query: 180 SELWEKAMHTSLILYAEHEFNASTFASRVIAGTGSDMYSAITGGIGALRGPKHGGANEVA 239 S LWEKAMHTSLILYAEHEFNASTF RVIAGTGSDMYSAITG IGALRGPKHGGANE A Sbjct: 181 SALWEKAMHTSLILYAEHEFNASTFTGRVIAGTGSDMYSAITGAIGALRGPKHGGANEFA 240 Query: 240 FEIQKRYDNPDEAEADIKRRVENKEVVIGFGHPVYTISDPRNKVIKEVARKLSKDAGSVK 299 FEIQKRY++PDEAEADIKRRVENKEVVIGFGHPVYTISDPRNKVIKEVAR LS++AGS+K Sbjct: 241 FEIQKRYESPDEAEADIKRRVENKEVVIGFGHPVYTISDPRNKVIKEVARTLSEEAGSLK 300 Query: 300 MFDIAERLETVMWDIKKMFPNLDWFSAVSYHMMGVPTAMFTPLFVIARTSGWAAHIIEQR 359 MFDIAERLETVMWDIKKMFPNLDWFSAVSYHMMGVPTAMFTPLFVIARTSGWAAHIIEQR Sbjct: 301 MFDIAERLETVMWDIKKMFPNLDWFSAVSYHMMGVPTAMFTPLFVIARTSGWAAHIIEQR 360 Query: 360 IDNKIIRPSANYVGPEDLKFVPIGKRK 386 IDNKIIRPSA+YVGPEDL FVP+ KRK Sbjct: 361 IDNKIIRPSAHYVGPEDLAFVPLAKRK 387 >ref|YP_004686318.1| 2-methylcitrate synthase PrpC [Cupriavidus necator N-1] gb|AEI77837.1| 2-methylcitrate synthase PrpC [Cupriavidus necator N-1] Length = 398 Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/385 (89%), Positives = 367/385 (95%), Gaps = 4/385 (1%) Query: 2 SEPQAPATGFKPKKSVALSGVTAGNTALCTVGKTGNDLHYRGYDILDVADSCEFEEIAHL 61 SEP AP + KKSVALSGVTAGNTALCTVG+TGNDLHYRGYDILD+A++CEFEEIAHL Sbjct: 18 SEPAAP----RVKKSVALSGVTAGNTALCTVGRTGNDLHYRGYDILDIAETCEFEEIAHL 73 Query: 62 LVHGKLPTAAELKAYKAKLKALRGLPANVKAALEWLPAASHPMDVMRTGVSALGCVLPEK 121 LVHGKLPT +EL AYKAKLK+LRGLPANVKAALEW+PA++HPMDVMRTGVS LG VLPEK Sbjct: 74 LVHGKLPTKSELAAYKAKLKSLRGLPANVKAALEWVPASAHPMDVMRTGVSVLGTVLPEK 133 Query: 122 DDHNTPGARDIADRLMASLGSMLLYWYHYSQNGKRIEVETDDESIGGHFLHLLHGEKPSE 181 +DHNTPGARDIADRLMASLGSMLLYWYHYS NGKRIEVETDD+SIGGHFLHLLHGEKPS Sbjct: 134 EDHNTPGARDIADRLMASLGSMLLYWYHYSHNGKRIEVETDDDSIGGHFLHLLHGEKPSA 193 Query: 182 LWEKAMHTSLILYAEHEFNASTFASRVIAGTGSDMYSAITGGIGALRGPKHGGANEVAFE 241 LWE+AM+TSL LYAEHEFNASTFA+RVIAGTGSDMYS+I+G IGALRGPKHGGANEVAFE Sbjct: 194 LWERAMNTSLNLYAEHEFNASTFAARVIAGTGSDMYSSISGAIGALRGPKHGGANEVAFE 253 Query: 242 IQKRYDNPDEAEADIKRRVENKEVVIGFGHPVYTISDPRNKVIKEVARKLSKDAGSVKMF 301 IQKRYDNPDEA+ADI RRVENKEVVIGFGHPVYT DPRN+VIKEVA+KLSKDAGS+KMF Sbjct: 254 IQKRYDNPDEAQADITRRVENKEVVIGFGHPVYTTGDPRNQVIKEVAKKLSKDAGSMKMF 313 Query: 302 DIAERLETVMWDIKKMFPNLDWFSAVSYHMMGVPTAMFTPLFVIARTSGWAAHIIEQRID 361 DIAERLETVMWDIKKMFPNLDWFSAVSYHMMGVPTAMFTPLFVIARTSGWAAHIIEQRID Sbjct: 314 DIAERLETVMWDIKKMFPNLDWFSAVSYHMMGVPTAMFTPLFVIARTSGWAAHIIEQRID 373 Query: 362 NKIIRPSANYVGPEDLKFVPIGKRK 386 NKIIRPSANY GPE+LKFVPIGKRK Sbjct: 374 NKIIRPSANYTGPENLKFVPIGKRK 398 >ref|YP_296535.1| methylcitrate synthase [Ralstonia eutropha JMP134] gb|AAZ61691.1| 2-methylcitrate synthase [Ralstonia eutropha JMP134] Length = 393 Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/383 (90%), Positives = 362/383 (94%), Gaps = 2/383 (0%) Query: 4 PQAPATGFKPKKSVALSGVTAGNTALCTVGKTGNDLHYRGYDILDVADSCEFEEIAHLLV 63 PQ+ G KPKKSVALSGVTAGNTALCTVG+TGNDLHYRGYDILDVAD+CEFEEIAHLLV Sbjct: 13 PQS--AGPKPKKSVALSGVTAGNTALCTVGRTGNDLHYRGYDILDVADACEFEEIAHLLV 70 Query: 64 HGKLPTAAELKAYKAKLKALRGLPANVKAALEWLPAASHPMDVMRTGVSALGCVLPEKDD 123 HGKLP AEL AYK KLK+LRGLPANVKAALEW+PA++HPMDVMRTGVS LG VLPEKDD Sbjct: 71 HGKLPNRAELAAYKTKLKSLRGLPANVKAALEWVPASAHPMDVMRTGVSVLGTVLPEKDD 130 Query: 124 HNTPGARDIADRLMASLGSMLLYWYHYSQNGKRIEVETDDESIGGHFLHLLHGEKPSELW 183 HN PGARDIADRLMASLGSMLLYWYHYS NG+RIEVETDD+SIG HFLHLLHGEKPS+LW Sbjct: 131 HNAPGARDIADRLMASLGSMLLYWYHYSHNGRRIEVETDDDSIGAHFLHLLHGEKPSKLW 190 Query: 184 EKAMHTSLILYAEHEFNASTFASRVIAGTGSDMYSAITGGIGALRGPKHGGANEVAFEIQ 243 E+AMHTS+ILYAEHEFNASTF RVIAGTGSDMYSAI G IGALRGPKHGGANEVAFEIQ Sbjct: 191 ERAMHTSMILYAEHEFNASTFTGRVIAGTGSDMYSAICGAIGALRGPKHGGANEVAFEIQ 250 Query: 244 KRYDNPDEAEADIKRRVENKEVVIGFGHPVYTISDPRNKVIKEVARKLSKDAGSVKMFDI 303 KRYD+PDEA+ADI RRVENKEVVIGFGHPVYTI+DPRN+VIKE AR LSKDAGS+KMFDI Sbjct: 251 KRYDSPDEAQADIARRVENKEVVIGFGHPVYTIADPRNQVIKETARNLSKDAGSMKMFDI 310 Query: 304 AERLETVMWDIKKMFPNLDWFSAVSYHMMGVPTAMFTPLFVIARTSGWAAHIIEQRIDNK 363 AERLETVMWDIKKMFPNLDWFSAVSYHMMGVPTAMFTPLFVIARTSGWAAHIIEQRIDNK Sbjct: 311 AERLETVMWDIKKMFPNLDWFSAVSYHMMGVPTAMFTPLFVIARTSGWAAHIIEQRIDNK 370 Query: 364 IIRPSANYVGPEDLKFVPIGKRK 386 IIRPSANY GPEDLKFVPIGKRK Sbjct: 371 IIRPSANYTGPEDLKFVPIGKRK 393