BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0014.p (333 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_07776982.1| protein of unknown function DUF453 [Pseudomon... 523 e-146 ref|YP_296020.1| methylitaconate delta2-delta3-isomerase [Ralsto... 521 e-146 ref|YP_004355354.1| hypothetical protein PSEBR_a3955 [Pseudomona... 521 e-146 ref|ZP_02377283.1| hypothetical protein BuboB_06141 [Burkholderi... 520 e-145 ref|YP_001778378.1| AcnD-accessory protein PrpF [Burkholderia ce... 518 e-145 >ref|ZP_07776982.1| protein of unknown function DUF453 [Pseudomonas fluorescens WH6] gb|EFQ62008.1| protein of unknown function DUF453 [Pseudomonas fluorescens WH6] Length = 396 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 254/303 (83%), Positives = 271/303 (89%), Gaps = 5/303 (1%) Query: 1 MTHVPQIKIPATYMRGGTSKGVFFRLQDLPATAQAPGPXRGGPARDALLMRVIGSPDPYG 60 M HV QIKIPATYMRGGTSKGVFF L+DLPA+AQ PG ARDALL+RVIGSPDPY Sbjct: 1 MAHVAQIKIPATYMRGGTSKGVFFSLRDLPASAQVPGA-----ARDALLLRVIGSPDPYD 55 Query: 61 KQIDGMGGATSSTSKTVILSKSTRAGHDVDYLFGQVSIDTAFVDWSGNCGNLSAAVGPFA 120 KQIDGMGGATSSTSKTVIL+KSTRA HDVDYLFGQVSID FVDWSGNCGNLSAAVG FA Sbjct: 56 KQIDGMGGATSSTSKTVILAKSTRADHDVDYLFGQVSIDKPFVDWSGNCGNLSAAVGSFA 115 Query: 121 ISNGLVNPDRIPVNGVCIVRIWQANIGKTIIAHVPITDGQVQETGDFELDGVTFPAAEVQ 180 IS GLV+P R+P NGV +VR+WQANIGKTIIAHVPITDG VQETGDFELDGVTFPAAEVQ Sbjct: 116 ISAGLVDPARVPRNGVAVVRVWQANIGKTIIAHVPITDGAVQETGDFELDGVTFPAAEVQ 175 Query: 181 LEFMDPAAEEEGAGGAMFPTGNLVDDLEVPGIGTFKATMINAGIPAIFLNAEDIGYTGAE 240 LEFMDPAAEEEG GG+MFPTGNLVDDLEVPG+GTFKAT+IN GIP IF+NAED+GYTG E Sbjct: 176 LEFMDPAAEEEGGGGSMFPTGNLVDDLEVPGVGTFKATLINVGIPTIFINAEDLGYTGTE 235 Query: 241 LQDAINGDPKALARFETVRAHGAVRMGLIKHVDEAVKRQHTPKVAFVAKPRDYTASSGKK 300 LQ AIN DPKALA FETVRAHGA+RMGLIKH+DEA +RQHTPKVAFVAKP DY ASSGK Sbjct: 236 LQGAINSDPKALAMFETVRAHGALRMGLIKHLDEAAQRQHTPKVAFVAKPADYVASSGKA 295 Query: 301 VAA 303 + A Sbjct: 296 IKA 298 >ref|YP_296020.1| methylitaconate delta2-delta3-isomerase [Ralstonia eutropha JMP134] gb|AAZ61176.1| 2-methylaconitate cis-trans isomerase [Ralstonia eutropha JMP134] Length = 397 Score = 521 bits (1343), Expect = e-146, Method: Compositional matrix adjust. Identities = 258/304 (84%), Positives = 273/304 (89%), Gaps = 6/304 (1%) Query: 1 MTHVPQIKIPATYMRGGTSKGVFFRLQDLPATAQAPGPXRGGPARDALLMRVIGSPDPYG 60 M HVPQIKIPATY+RGGTSKGVFFRLQDLP TAQ PG ARDALLMRVIGSPDPYG Sbjct: 1 MAHVPQIKIPATYIRGGTSKGVFFRLQDLPETAQVPGK-----ARDALLMRVIGSPDPYG 55 Query: 61 KQIDGMGGATSSTSKTVILSKSTRAGHDVDYLFGQVSIDTAFVDWSGNCGNLSAAVGPFA 120 KQIDGMG ATSSTSKTVI+SKS+R HDVDYLFGQVSID FVDWSGNCGNLSAAVGPFA Sbjct: 56 KQIDGMGAATSSTSKTVIVSKSSRPDHDVDYLFGQVSIDQPFVDWSGNCGNLSAAVGPFA 115 Query: 121 ISNGLVNPDRIPVNGVCIVRIWQANIGKTIIAHVPITDGQVQETGDFELDGVTFPAAEVQ 180 IS GLV+ R+P NG +VRIWQANIGKTIIAHVPIT+G+VQETGDFELDGVTFPAAEVQ Sbjct: 116 ISGGLVDASRVPQNGTAVVRIWQANIGKTIIAHVPITNGEVQETGDFELDGVTFPAAEVQ 175 Query: 181 LEFMDPAAEEEG-AGGAMFPTGNLVDDLEVPGIGTFKATMINAGIPAIFLNAEDIGYTGA 239 LEFMDPAA+EEG GGAMFPTGNLVDDLEVPG+GTFKATMINAGIP IF+NAE IGYTG Sbjct: 176 LEFMDPAADEEGDGGGAMFPTGNLVDDLEVPGVGTFKATMINAGIPTIFVNAEAIGYTGT 235 Query: 240 ELQDAINGDPKALARFETVRAHGAVRMGLIKHVDEAVKRQHTPKVAFVAKPRDYTASSGK 299 ELQ+AINGDPKALA FET+RA+GAVRMGLIK VDEA KRQHTPKVAFVAKP+DY ASSGK Sbjct: 236 ELQEAINGDPKALAMFETIRAYGAVRMGLIKSVDEAAKRQHTPKVAFVAKPKDYVASSGK 295 Query: 300 KVAA 303 V A Sbjct: 296 PVGA 299 >ref|YP_004355354.1| hypothetical protein PSEBR_a3955 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA70350.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 397 Score = 521 bits (1341), Expect = e-146, Method: Compositional matrix adjust. Identities = 253/303 (83%), Positives = 270/303 (89%), Gaps = 5/303 (1%) Query: 1 MTHVPQIKIPATYMRGGTSKGVFFRLQDLPATAQAPGPXRGGPARDALLMRVIGSPDPYG 60 M H PQI+IPATYMRGGTSKGVFF LQDLP A+ PG ARDALL+RVIGSPDPY Sbjct: 1 MAHAPQIRIPATYMRGGTSKGVFFSLQDLPEAARVPGA-----ARDALLLRVIGSPDPYE 55 Query: 61 KQIDGMGGATSSTSKTVILSKSTRAGHDVDYLFGQVSIDTAFVDWSGNCGNLSAAVGPFA 120 KQIDGMGGATSSTSKTVILSKSTRA HDVDYLFGQVSID FVDWSGNCGNLSAAVG FA Sbjct: 56 KQIDGMGGATSSTSKTVILSKSTRADHDVDYLFGQVSIDKPFVDWSGNCGNLSAAVGSFA 115 Query: 121 ISNGLVNPDRIPVNGVCIVRIWQANIGKTIIAHVPITDGQVQETGDFELDGVTFPAAEVQ 180 IS+GLV+ RIP NG+ +VRIWQANIGKTIIAHVPITDG VQETGDFELDGVTFPAAEVQ Sbjct: 116 ISSGLVDAGRIPQNGMAVVRIWQANIGKTIIAHVPITDGAVQETGDFELDGVTFPAAEVQ 175 Query: 181 LEFMDPAAEEEGAGGAMFPTGNLVDDLEVPGIGTFKATMINAGIPAIFLNAEDIGYTGAE 240 LEFMDPAAEEEG GG+MFPTGNLVDDLEVPG+GTFKAT+INAGIP IF+NA D+GYTG E Sbjct: 176 LEFMDPAAEEEGGGGSMFPTGNLVDDLEVPGVGTFKATLINAGIPTIFINARDVGYTGTE 235 Query: 241 LQDAINGDPKALARFETVRAHGAVRMGLIKHVDEAVKRQHTPKVAFVAKPRDYTASSGKK 300 LQ AINGDPKALA FET+RAHGA+RMGLIKH+DEA +RQHTPKVAFVA P DY +SSGK Sbjct: 236 LQGAINGDPKALAMFETIRAHGALRMGLIKHLDEAAQRQHTPKVAFVAPPADYVSSSGKA 295 Query: 301 VAA 303 VAA Sbjct: 296 VAA 298 >ref|ZP_02377283.1| hypothetical protein BuboB_06141 [Burkholderia ubonensis Bu] Length = 396 Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust. Identities = 252/304 (82%), Positives = 272/304 (89%), Gaps = 5/304 (1%) Query: 1 MTHVPQIKIPATYMRGGTSKGVFFRLQDLPATAQAPGPXRGGPARDALLMRVIGSPDPYG 60 M H+PQI+IPATY+RGGTSKGVFFRLQDLP AQAPG ARDALL+RVIGSPDPYG Sbjct: 1 MAHIPQIRIPATYLRGGTSKGVFFRLQDLPEAAQAPGA-----ARDALLLRVIGSPDPYG 55 Query: 61 KQIDGMGGATSSTSKTVILSKSTRAGHDVDYLFGQVSIDTAFVDWSGNCGNLSAAVGPFA 120 KQIDGMGGATSSTSKTVI+SKSTR GHDVDYLFGQVSID AFVDW+GNCGNLSAAVGPFA Sbjct: 56 KQIDGMGGATSSTSKTVIVSKSTRPGHDVDYLFGQVSIDKAFVDWTGNCGNLSAAVGPFA 115 Query: 121 ISNGLVNPDRIPVNGVCIVRIWQANIGKTIIAHVPITDGQVQETGDFELDGVTFPAAEVQ 180 IS GLV+P R+P +G+ VRIWQANIGKTI+AHVPIT+G VQETGDFELDGVTFPAAEVQ Sbjct: 116 ISGGLVDPSRVPRDGIATVRIWQANIGKTIVAHVPITNGAVQETGDFELDGVTFPAAEVQ 175 Query: 181 LEFMDPAAEEEGAGGAMFPTGNLVDDLEVPGIGTFKATMINAGIPAIFLNAEDIGYTGAE 240 LEFMDPAA+EEGAGGAMFPTGNLVDDL VPGIGT KATMINAGIP IF+ AE IGYTG E Sbjct: 176 LEFMDPAADEEGAGGAMFPTGNLVDDLAVPGIGTLKATMINAGIPTIFVEAEAIGYTGTE 235 Query: 241 LQDAINGDPKALARFETVRAHGAVRMGLIKHVDEAVKRQHTPKVAFVAKPRDYTASSGKK 300 LQDAINGD KAL +FET+RAHGA+RMGLI +DE RQHTPK+AFVAKP DY ASSGK+ Sbjct: 236 LQDAINGDAKALEKFETIRAHGALRMGLIDTLDEIATRQHTPKIAFVAKPADYVASSGKR 295 Query: 301 VAAA 304 VAAA Sbjct: 296 VAAA 299 >ref|YP_001778378.1| AcnD-accessory protein PrpF [Burkholderia cenocepacia MC0-3] gb|ACA93888.1| AcnD-accessory protein PrpF [Burkholderia cenocepacia MC0-3] Length = 396 Score = 518 bits (1335), Expect = e-145, Method: Compositional matrix adjust. Identities = 253/303 (83%), Positives = 272/303 (89%), Gaps = 5/303 (1%) Query: 1 MTHVPQIKIPATYMRGGTSKGVFFRLQDLPATAQAPGPXRGGPARDALLMRVIGSPDPYG 60 M H+PQI+IPATYMRGGTSKGVFFRLQDLP AQAPG ARDALL+RVIGSPDPYG Sbjct: 1 MAHIPQIRIPATYMRGGTSKGVFFRLQDLPDAAQAPGA-----ARDALLLRVIGSPDPYG 55 Query: 61 KQIDGMGGATSSTSKTVILSKSTRAGHDVDYLFGQVSIDTAFVDWSGNCGNLSAAVGPFA 120 KQIDGMGGATSSTSKTVI+SKSTR GHDVDYLFGQV+ID AFVDW+GNCGNLSAAVGPFA Sbjct: 56 KQIDGMGGATSSTSKTVIVSKSTRPGHDVDYLFGQVAIDKAFVDWTGNCGNLSAAVGPFA 115 Query: 121 ISNGLVNPDRIPVNGVCIVRIWQANIGKTIIAHVPITDGQVQETGDFELDGVTFPAAEVQ 180 IS GLV+P R+P +GV VRIWQANIGKTIIAHVPIT+G VQETGDFELDGVTFPAAEVQ Sbjct: 116 ISGGLVDPARVPRDGVATVRIWQANIGKTIIAHVPITNGAVQETGDFELDGVTFPAAEVQ 175 Query: 181 LEFMDPAAEEEGAGGAMFPTGNLVDDLEVPGIGTFKATMINAGIPAIFLNAEDIGYTGAE 240 LEFMDPAAEEEGAGG+MFPTGNLVDDL VPGIGT KATMINAGIP IF++AE IGYTG E Sbjct: 176 LEFMDPAAEEEGAGGSMFPTGNLVDDLAVPGIGTLKATMINAGIPTIFVDAEAIGYTGTE 235 Query: 241 LQDAINGDPKALARFETVRAHGAVRMGLIKHVDEAVKRQHTPKVAFVAKPRDYTASSGKK 300 LQDAINGDPKAL +FET+RAHGA+RMGLI +DE RQHTPK+AFVAKP DY ASSGK+ Sbjct: 236 LQDAINGDPKALEKFETIRAHGALRMGLIDTLDEIATRQHTPKIAFVAKPADYVASSGKR 295 Query: 301 VAA 303 V A Sbjct: 296 VNA 298