BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0008.p (252 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001895910.1| AraC family transcriptional regulator [Burkh... 333 2e-89 ref|YP_001857491.1| AraC family transcriptional regulator [Burkh... 331 6e-89 ref|YP_003907139.1| AraC family transcriptional regulator [Burkh... 328 5e-88 ref|YP_262274.1| AraC family transcriptional regulator [Pseudomo... 328 6e-88 ref|YP_004227991.1| AraC family transcriptional regulator [Burkh... 327 8e-88 >ref|YP_001895910.1| AraC family transcriptional regulator [Burkholderia phytofirmans PsJN] gb|ACD16686.1| transcriptional regulator, AraC family [Burkholderia phytofirmans PsJN] Length = 300 Score = 333 bits (853), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 156/248 (62%), Positives = 199/248 (80%) Query: 1 MERIEAFFHGRGYAMHRHDTYAIGITLGGVQSFQYKKSMRHSLPGNTMALYPDEPHDGQA 60 +ERIEAFFH GYAMHRHDTYAIG TL GVQSF+Y+ S R+SLPG TM L+PDEPHDGQA Sbjct: 45 IERIEAFFHQAGYAMHRHDTYAIGRTLSGVQSFRYRGSTRNSLPGGTMVLHPDEPHDGQA 104 Query: 61 GSEAGFRYRMLYIEPSLLQDALGGVALPFIEGGISTDPRLFGAVRNLLLHMDDEVEPLQQ 120 G+ GF YRM+Y++P+L Q ALGG LPF+EGG+S DPRLF A ++LL MD ++PL+Q Sbjct: 105 GTGDGFHYRMIYVDPALFQQALGGKPLPFLEGGLSNDPRLFAATQSLLRAMDSAIDPLEQ 164 Query: 121 DDGIFELARALDAVSGKRPRRHAADFRAAQLAREYIHGALDRTLTLDELAQASGRDRWSL 180 D +++LA ALD V+G D+RA+ LAR+Y+ +LDR +TLDELA A+GRDRWSL Sbjct: 165 DSALYDLAVALDTVAGAPDTPRPVDYRASTLARDYLLASLDRAVTLDELAAAAGRDRWSL 224 Query: 181 TRDFRSFFGTSPYRYLSMRRLDMARRLMAQGLPLADAAAMSGFADQSHMTRLFTKTYGIA 240 +RDFR+ FGTSP+RYL+MRRLD+ R+L+ +G+ LADA+A SGFADQSHMTR F +G+A Sbjct: 225 SRDFRALFGTSPHRYLTMRRLDLVRQLVLKGVSLADASAASGFADQSHMTRHFKHAWGVA 284 Query: 241 PAHWLRIM 248 PA WL+++ Sbjct: 285 PAQWLKML 292 >ref|YP_001857491.1| AraC family transcriptional regulator [Burkholderia phymatum STM815] gb|ACC70445.1| transcriptional regulator, AraC family [Burkholderia phymatum STM815] Length = 290 Score = 331 bits (848), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 163/251 (64%), Positives = 203/251 (80%), Gaps = 3/251 (1%) Query: 1 MERIEAFFHGRGYAMHRHDTYAIGITLGGVQSFQYKKSMRHSLPGNTMALYPDEPHDGQA 60 +ERIEAFF GYA+HRHDTYAIG TL GVQSF Y+ S+R+SLPG TM L+PDE HDGQA Sbjct: 35 VERIEAFFQRNGYALHRHDTYAIGRTLAGVQSFHYRHSVRNSLPGGTMVLHPDEAHDGQA 94 Query: 61 GSEAGFRYRMLYIEPSLLQDALGGVALPFIEGGISTDPRLFGAVRNLLLHMDDEVEPLQQ 120 G++ GFRYRM+Y+EP++ Q ALGG LPFIEGG+S DPRL A + LL +D ++PL+Q Sbjct: 95 GTDEGFRYRMIYVEPAVFQAALGGKPLPFIEGGLSDDPRLAHATQALLQGLDRALDPLEQ 154 Query: 121 DDGIFELARALDAVSGKRP---RRHAADFRAAQLAREYIHGALDRTLTLDELAQASGRDR 177 DD +F+LA ALDAVS RP R +ADFRAAQLAR+Y+H +L++ +TLDELA ASGRDR Sbjct: 155 DDALFDLAHALDAVSSARPVQRPRPSADFRAAQLARDYLHASLEQPVTLDELAAASGRDR 214 Query: 178 WSLTRDFRSFFGTSPYRYLSMRRLDMARRLMAQGLPLADAAAMSGFADQSHMTRLFTKTY 237 WSL+RDFR+FFGTSP+RYL+MRRLD AR+ + +G+ L DAAA +GFADQSHMTR F Y Sbjct: 215 WSLSRDFRTFFGTSPHRYLTMRRLDAARQSILRGIALVDAAAAAGFADQSHMTRHFVAAY 274 Query: 238 GIAPAHWLRIM 248 G+ P+ WLR++ Sbjct: 275 GVTPSRWLRML 285 >ref|YP_003907139.1| AraC family transcriptional regulator [Burkholderia sp. CCGE1003] gb|ADN57848.1| transcriptional regulator, AraC family [Burkholderia sp. CCGE1003] Length = 309 Score = 328 bits (841), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 164/248 (66%), Positives = 200/248 (80%) Query: 1 MERIEAFFHGRGYAMHRHDTYAIGITLGGVQSFQYKKSMRHSLPGNTMALYPDEPHDGQA 60 +ERIEAFFHG GYAMHRHDTYAIG TL GVQSF+Y+ SMRHSLPG TM L+PDEPHDGQA Sbjct: 54 IERIEAFFHGAGYAMHRHDTYAIGRTLAGVQSFRYRGSMRHSLPGGTMVLHPDEPHDGQA 113 Query: 61 GSEAGFRYRMLYIEPSLLQDALGGVALPFIEGGISTDPRLFGAVRNLLLHMDDEVEPLQQ 120 G+ GFRYRM+Y++P+L Q ALGG LPF++GG+S DPRLF A N+L MD + PL+Q Sbjct: 114 GTGEGFRYRMIYVDPALFQQALGGQPLPFVKGGLSNDPRLFAATHNVLSSMDRAMNPLEQ 173 Query: 121 DDGIFELARALDAVSGKRPRRHAADFRAAQLAREYIHGALDRTLTLDELAQASGRDRWSL 180 DDG++ELA AL A +G R R DF AA+ AREY+ +L+RT+TLDELA A+GRDRWSL Sbjct: 174 DDGLYELAMALHAAAGARATRRPVDFGAARRAREYLLASLERTVTLDELAAAAGRDRWSL 233 Query: 181 TRDFRSFFGTSPYRYLSMRRLDMARRLMAQGLPLADAAAMSGFADQSHMTRLFTKTYGIA 240 + DFR+ FGTSP+RYL+MRRLD R+L G+PLADA+A SGFADQSHMTR F + +G+A Sbjct: 234 SHDFRALFGTSPHRYLTMRRLDRVRQLALAGMPLADASAASGFADQSHMTRHFKRAWGVA 293 Query: 241 PAHWLRIM 248 PA WL ++ Sbjct: 294 PAQWLGML 301 >ref|YP_262274.1| AraC family transcriptional regulator [Pseudomonas fluorescens Pf-5] gb|AAY94416.1| transcriptional regulator, AraC family [Pseudomonas fluorescens Pf-5] Length = 269 Score = 328 bits (840), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 160/248 (64%), Positives = 193/248 (77%) Query: 1 MERIEAFFHGRGYAMHRHDTYAIGITLGGVQSFQYKKSMRHSLPGNTMALYPDEPHDGQA 60 +ERIEA+F G GY MHRHDTYAIG TL GVQSFQY+ RHSLPG TM L+PDE HDG+A Sbjct: 20 LERIEAYFAGHGYDMHRHDTYAIGRTLHGVQSFQYRGGWRHSLPGATMVLHPDEAHDGEA 79 Query: 61 GSEAGFRYRMLYIEPSLLQDALGGVALPFIEGGISTDPRLFGAVRNLLLHMDDEVEPLQQ 120 G+ GF YRMLY+EP+L+Q LGG LPFI GG+S DPRLF A LL +D ++PL+Q Sbjct: 80 GTHDGFHYRMLYVEPALIQQILGGQPLPFITGGLSNDPRLFAATEALLRGVDSPLDPLEQ 139 Query: 121 DDGIFELARALDAVSGKRPRRHAADFRAAQLAREYIHGALDRTLTLDELAQASGRDRWSL 180 +D +F+LA AL++VSG R D+ AA+ AREYIH ALDRTLTL+ELA SGRDRWSL Sbjct: 140 EDALFDLAHALNSVSGVAQSRQRFDYVAAERAREYIHSALDRTLTLEELAAHSGRDRWSL 199 Query: 181 TRDFRSFFGTSPYRYLSMRRLDMARRLMAQGLPLADAAAMSGFADQSHMTRLFTKTYGIA 240 +RDFR FGTSPYRYLSMRRLD+ R L+ QG LA+AA ++GF DQSHMTR F +TYG+ Sbjct: 200 SRDFRLLFGTSPYRYLSMRRLDLVRALLVQGQSLANAALIAGFTDQSHMTRQFRQTYGLP 259 Query: 241 PAHWLRIM 248 PA WL+++ Sbjct: 260 PARWLKML 267 >ref|YP_004227991.1| AraC family transcriptional regulator [Burkholderia sp. CCGE1001] gb|ADX54931.1| transcriptional regulator, AraC family [Burkholderia sp. CCGE1001] Length = 301 Score = 327 bits (839), Expect = 8e-88, Method: Compositional matrix adjust. Identities = 159/248 (64%), Positives = 201/248 (81%) Query: 1 MERIEAFFHGRGYAMHRHDTYAIGITLGGVQSFQYKKSMRHSLPGNTMALYPDEPHDGQA 60 +ERIEAFFHG GYAMHRHDTYAIG TL GVQSF+Y+ S+RHSLPG T+ L+PDEPHDGQA Sbjct: 44 IERIEAFFHGAGYAMHRHDTYAIGRTLAGVQSFRYRGSLRHSLPGGTLVLHPDEPHDGQA 103 Query: 61 GSEAGFRYRMLYIEPSLLQDALGGVALPFIEGGISTDPRLFGAVRNLLLHMDDEVEPLQQ 120 G+ GFRYRM+Y++P+L Q+ALGG LPF++GG+S DPRLF A RNLL MD ++PL+Q Sbjct: 104 GTGEGFRYRMIYVDPALFQEALGGKPLPFVKGGLSDDPRLFAATRNLLRGMDRAMDPLEQ 163 Query: 121 DDGIFELARALDAVSGKRPRRHAADFRAAQLAREYIHGALDRTLTLDELAQASGRDRWSL 180 DDG++ELA AL A +G P R D+ AA+ AREY+ + +R +TLD++A A+GRDRWSL Sbjct: 164 DDGLYELAMALHAAAGAAPTRRPVDYAAARRAREYLLASRERAVTLDDVAAAAGRDRWSL 223 Query: 181 TRDFRSFFGTSPYRYLSMRRLDMARRLMAQGLPLADAAAMSGFADQSHMTRLFTKTYGIA 240 + DFR+ FGTSP+RYL+MRRLD+ R+L GLPLADAAA SGF+DQSHMTR F + +G+A Sbjct: 224 SHDFRALFGTSPHRYLTMRRLDLVRQLALAGLPLADAAAASGFSDQSHMTRHFRRAWGVA 283 Query: 241 PAHWLRIM 248 P WL ++ Sbjct: 284 PGQWLAML 291