BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0002.p         (143 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004153827.1| HxlR family transcriptional regulator [Vario...   194   3e-48
ref|ZP_03570157.1| transcriptional regulator, HxlR family [Burkh...   187   3e-46
ref|YP_001948014.1| putative transcriptional regulator [Burkhold...   187   5e-46
ref|YP_001584871.1| HxlR family transcriptional regulator [Burkh...   187   7e-46
ref|YP_002233485.1| MarR family regulatory protein [Burkholderia...   184   3e-45

>ref|YP_004153827.1| HxlR family transcriptional regulator [Variovorax paradoxus EPS]
 gb|ADU35716.1| transcriptional regulator, HxlR family [Variovorax paradoxus EPS]
          Length = 170

 Score =  194 bits (494), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 90/138 (65%), Positives = 115/138 (83%)

Query: 2   SDPCPVARSIDVVGDRWALLIIRDAFDGMRRFGEFQKSLGVAKNILSARLRDLVDAGILD 61
           SD CP+ARS+D+VGD+W+LLIIRDAFDGM+RFGEFQ+SLGVAKNIL+ RL++LV  G+L 
Sbjct: 9   SDTCPMARSLDIVGDQWSLLIIRDAFDGMKRFGEFQQSLGVAKNILADRLKNLVQEGVLA 68

Query: 62  VAPASDGSAYQEYLLTAKGKGLFTVVLGLRQWGEGHLFKKGESIAPMVDRDSGKPIPKIT 121
           +APASDG+ YQEY+LT KG GLF VV+GLR WGE HL+ KGE+ + +V+R SGKP+ K+ 
Sbjct: 69  LAPASDGTMYQEYVLTPKGNGLFPVVVGLRHWGEQHLYGKGEAHSVLVERGSGKPVRKLD 128

Query: 122 LHTCEGKPLKPENAFVKR 139
           L T +GKPL   + FVK+
Sbjct: 129 LRTHDGKPLDAADTFVKK 146


>ref|ZP_03570157.1| transcriptional regulator, HxlR family [Burkholderia multivorans
           CGD2M]
 ref|ZP_03576800.1| transcriptional regulator, HxlR family [Burkholderia multivorans
           CGD2]
 gb|EEE08377.1| transcriptional regulator, HxlR family [Burkholderia multivorans
           CGD2]
 gb|EEE16064.1| transcriptional regulator, HxlR family [Burkholderia multivorans
           CGD2M]
          Length = 160

 Score =  187 bits (476), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 88/139 (63%), Positives = 112/139 (80%)

Query: 5   CPVARSIDVVGDRWALLIIRDAFDGMRRFGEFQKSLGVAKNILSARLRDLVDAGILDVAP 64
           CPVAR+ D+VGDRWALLI+RDAFDG+RRFG+F+ SLGVA NILS RLR LV+AG+ DV P
Sbjct: 16  CPVARATDIVGDRWALLIVRDAFDGVRRFGDFRTSLGVASNILSDRLRMLVEAGVFDVVP 75

Query: 65  ASDGSAYQEYLLTAKGKGLFTVVLGLRQWGEGHLFKKGESIAPMVDRDSGKPIPKITLHT 124
           ASDGSAYQEY+LT KG+GLF V++ LRQWGE +LF +GE  + +VDR +G+ + K+ L  
Sbjct: 76  ASDGSAYQEYVLTKKGEGLFPVIVMLRQWGEANLFARGEPHSVLVDRKTGRALRKLALRQ 135

Query: 125 CEGKPLKPENAFVKRKARA 143
            +G+PLKP + FVK+   A
Sbjct: 136 DDGRPLKPADTFVKKIGEA 154


>ref|YP_001948014.1| putative transcriptional regulator [Burkholderia multivorans ATCC
           17616]
 dbj|BAG45478.1| putative transcriptional regulator [Burkholderia multivorans ATCC
           17616]
          Length = 185

 Score =  187 bits (474), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 87/135 (64%), Positives = 111/135 (82%)

Query: 5   CPVARSIDVVGDRWALLIIRDAFDGMRRFGEFQKSLGVAKNILSARLRDLVDAGILDVAP 64
           CPVAR+ D+VGDRWALLI+RDAFDG+RRFG+F+ SLGVA NILS RLR LV+AG+ DV P
Sbjct: 41  CPVARATDIVGDRWALLIVRDAFDGVRRFGDFRTSLGVASNILSDRLRMLVEAGVFDVVP 100

Query: 65  ASDGSAYQEYLLTAKGKGLFTVVLGLRQWGEGHLFKKGESIAPMVDRDSGKPIPKITLHT 124
           ASDGSAYQEY+LT KG+GLF V++ LRQWGE +LF +GE  + +VDR +G+ + K+ L  
Sbjct: 101 ASDGSAYQEYVLTKKGEGLFPVIVMLRQWGEANLFARGEPHSVLVDRKTGRALRKLALRH 160

Query: 125 CEGKPLKPENAFVKR 139
            +G+PLKP + FVK+
Sbjct: 161 DDGRPLKPADTFVKK 175


>ref|YP_001584871.1| HxlR family transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gb|ABX18579.1| transcriptional regulator, HxlR family [Burkholderia multivorans
           ATCC 17616]
          Length = 156

 Score =  187 bits (474), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 87/135 (64%), Positives = 111/135 (82%)

Query: 5   CPVARSIDVVGDRWALLIIRDAFDGMRRFGEFQKSLGVAKNILSARLRDLVDAGILDVAP 64
           CPVAR+ D+VGDRWALLI+RDAFDG+RRFG+F+ SLGVA NILS RLR LV+AG+ DV P
Sbjct: 12  CPVARATDIVGDRWALLIVRDAFDGVRRFGDFRTSLGVASNILSDRLRMLVEAGVFDVVP 71

Query: 65  ASDGSAYQEYLLTAKGKGLFTVVLGLRQWGEGHLFKKGESIAPMVDRDSGKPIPKITLHT 124
           ASDGSAYQEY+LT KG+GLF V++ LRQWGE +LF +GE  + +VDR +G+ + K+ L  
Sbjct: 72  ASDGSAYQEYVLTKKGEGLFPVIVMLRQWGEANLFARGEPHSVLVDRKTGRALRKLALRH 131

Query: 125 CEGKPLKPENAFVKR 139
            +G+PLKP + FVK+
Sbjct: 132 DDGRPLKPADTFVKK 146


>ref|YP_002233485.1| MarR family regulatory protein [Burkholderia cenocepacia J2315]
 emb|CAR54724.1| MarR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 156

 Score =  184 bits (468), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 85/136 (62%), Positives = 110/136 (80%)

Query: 4   PCPVARSIDVVGDRWALLIIRDAFDGMRRFGEFQKSLGVAKNILSARLRDLVDAGILDVA 63
           PCPVAR+ D+VGDRWALLI+RDAFDG+RRFG+F+ SLGVA NILS RL+ LVDAG+ DV 
Sbjct: 11  PCPVARATDIVGDRWALLIVRDAFDGVRRFGDFRASLGVASNILSDRLKMLVDAGVFDVV 70

Query: 64  PASDGSAYQEYLLTAKGKGLFTVVLGLRQWGEGHLFKKGESIAPMVDRDSGKPIPKITLH 123
           PASDG+AYQEY+LT KG+GLF V++ LRQWGE +LF +GE  + ++DR +G+ I K+ L 
Sbjct: 71  PASDGTAYQEYVLTKKGEGLFPVIVMLRQWGEANLFARGERHSVLIDRGTGRAIRKLALR 130

Query: 124 TCEGKPLKPENAFVKR 139
             +G+PLK  +  VK+
Sbjct: 131 HDDGRPLKAADTVVKK 146