BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0171.p (160 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001098950.1| 16S rRNA-processing protein RimM [Herminiimo... 246 6e-64 ref|YP_001352282.1| 16S rRNA processing protein RimM [Janthinoba... 243 6e-63 ref|YP_004751823.1| 16S rRNA processing protein [Collimonas fung... 242 2e-62 ref|ZP_08273044.1| 16S rRNA processing protein RimM [Oxalobacter... 224 3e-57 ref|YP_003774930.1| 16s rRNA processing protein [Herbaspirillum ... 216 1e-54 >ref|YP_001098950.1| 16S rRNA-processing protein RimM [Herminiimonas arsenicoxydans] sp|A4G2T6.1|RIMM_HERAR RecName: Full=Ribosome maturation factor rimM emb|CAL60823.1| 16S rRNA processing protein [Herminiimonas arsenicoxydans] Length = 177 Score = 246 bits (629), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 123/160 (76%), Positives = 133/160 (83%), Gaps = 5/160 (3%) Query: 1 VRVKPYSADADALLGARTWWLDKPELRDVEMMQAKSHSGDVVARLMGVAGRDAAEALKGA 60 VRV+PYSADADALL A+TWWLDKPE RDV MMQ+K HSGDVVA+LMGVAGRDAAEALKGA Sbjct: 23 VRVRPYSADADALLNAKTWWLDKPEFRDVAMMQSKIHSGDVVAQLMGVAGRDAAEALKGA 82 Query: 61 VVQIARSHFPALSDGEFYWVDLIGLAVENMQGESLGVVSDLMDNGAHPILRVAVPAVPAE 120 VQI RSHFPALSD EFYWVDLIGL VEN+QG LG VSD+MDNGAHPILRVAVP Sbjct: 83 TVQIPRSHFPALSDNEFYWVDLIGLEVENLQGVRLGQVSDMMDNGAHPILRVAVPQTS-- 140 Query: 121 AGVEADSKAAAEILIPYVDQFVKTVSLADKKIVVDWGLDY 160 EAD KAA E+LIP+V+QFV T+ KKI VDWGLDY Sbjct: 141 ---EADPKAAQELLIPFVEQFVITIDQTAKKITVDWGLDY 177 >ref|YP_001352282.1| 16S rRNA processing protein RimM [Janthinobacterium sp. Marseille] sp|A6SVI5.1|RIMM_JANMA RecName: Full=Ribosome maturation factor rimM gb|ABR89143.1| 16S rRNA processing protein RimM [Janthinobacterium sp. Marseille] Length = 179 Score = 243 bits (620), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 123/161 (76%), Positives = 134/161 (83%), Gaps = 5/161 (3%) Query: 1 VRVKPYSADADALLGARTWWLDKPELRDVEMMQAKSHSGDVVARLMGVAGRDAAEALKGA 60 VRV+PYSADADALL A+TWWLDKPE DVEMMQ+K H+GDVVA+LMGVAGRDAAEALKGA Sbjct: 23 VRVRPYSADADALLTAKTWWLDKPEFHDVEMMQSKIHTGDVVAKLMGVAGRDAAEALKGA 82 Query: 61 VVQIARSHFPALSDGEFYWVDLIGLAVENMQGESLGVVSDLMDNGAHPILRVAVPAVPAE 120 VQI RSHFPALSD EFYWVDLIGL VEN+QGE LG VSD+MDNGAHPILRVAVP + Sbjct: 83 TVQIPRSHFPALSDNEFYWVDLIGLEVENLQGEHLGQVSDMMDNGAHPILRVAVP----Q 138 Query: 121 AGVEADSKAA-AEILIPYVDQFVKTVSLADKKIVVDWGLDY 160 A D KAA E+LIP+V+QFV TV KKI VDWGLDY Sbjct: 139 AAETTDPKAAPQELLIPFVEQFVITVDRTAKKITVDWGLDY 179 >ref|YP_004751823.1| 16S rRNA processing protein [Collimonas fungivorans Ter331] gb|AEK61000.1| 16S rRNA processing protein [Collimonas fungivorans Ter331] Length = 193 Score = 242 bits (617), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 119/163 (73%), Positives = 137/163 (84%), Gaps = 9/163 (5%) Query: 1 VRVKPYSADADALLGARTWWLDK---PELRDVEMMQAKSHSGDVVARLMGVAGRDAAEAL 57 VR+KPYSADADALL A+TWWL++ PEL DVEMMQAK+HSGD+VARLMGVAGRDAAEA+ Sbjct: 37 VRIKPYSADADALLHAKTWWLNRQNAPELHDVEMMQAKNHSGDIVARLMGVAGRDAAEAM 96 Query: 58 KGAVVQIARSHFPALSDGEFYWVDLIGLAVENMQGESLGVVSDLMDNGAHPILRVAVPAV 117 KG+VV I RSHFPAL+D EFYWVDLIG+ VEN+QGE LGVV+DLMDNGAHPILR+ VPA Sbjct: 97 KGSVVHIPRSHFPALADDEFYWVDLIGMMVENLQGEQLGVVADLMDNGAHPILRITVPAA 156 Query: 118 PAEAGVEADSKAAAEILIPYVDQFVKTVSLADKKIVVDWGLDY 160 + KAA E+L+P+V+QFVKTV A KKI VDWGLDY Sbjct: 157 ADQ------DKAAPELLVPFVEQFVKTVDQAAKKITVDWGLDY 193 >ref|ZP_08273044.1| 16S rRNA processing protein RimM [Oxalobacteraceae bacterium IMCC9480] gb|EGF33491.1| 16S rRNA processing protein RimM [Oxalobacteraceae bacterium IMCC9480] Length = 187 Score = 224 bits (571), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 113/160 (70%), Positives = 126/160 (78%), Gaps = 7/160 (4%) Query: 1 VRVKPYSADADALLGARTWWLDKPELRDVEMMQAKSHSGDVVARLMGVAGRDAAEALKGA 60 VR+KP+S+ DALL ARTWWLDKP L DV++MQAK HSGDVV +L GVAGRDAAEALKG Sbjct: 35 VRIKPFSSTGDALLNARTWWLDKPALHDVDVMQAKMHSGDVVVQLAGVAGRDAAEALKGT 94 Query: 61 VVQIARSHFPALSDGEFYWVDLIGLAVENMQGESLGVVSDLMDNGAHPILRVAVPAVPAE 120 VQI RS FPAL DGEFYWVDLIGLAVEN+QGES+GVV D+MDNGAHPILRV E Sbjct: 95 SVQIPRSRFPALPDGEFYWVDLIGLAVENLQGESIGVVHDMMDNGAHPILRV-------E 147 Query: 121 AGVEADSKAAAEILIPYVDQFVKTVSLADKKIVVDWGLDY 160 A + + A EILIP+V QFV+TV KKI VDWGLDY Sbjct: 148 AAIIPGADKADEILIPFVGQFVRTVDQQAKKITVDWGLDY 187 >ref|YP_003774930.1| 16s rRNA processing protein [Herbaspirillum seropedicae SmR1] gb|ADJ63022.1| 16s rRNA processing protein [Herbaspirillum seropedicae SmR1] Length = 204 Score = 216 bits (549), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 109/174 (62%), Positives = 133/174 (76%), Gaps = 14/174 (8%) Query: 1 VRVKPYSADADALLGARTWWLDKP--ELRDVEMMQAKSHSGDVVARLMGVAGRDAAEALK 58 +RV+PYS++ADALL A+TWWL+K +DV++MQ+K HSGDVVARL GVA R+AAEA+K Sbjct: 31 IRVRPYSSEADALLNAKTWWLEKSGQPKQDVDVMQSKGHSGDVVARLTGVADRNAAEAMK 90 Query: 59 GAVVQIARSHFPALSDGEFYWVDLIGLAVENMQGESLGVVSDLMDNGAHPILRVAVPAV- 117 G VV I+R HFPAL D EFYWVDLIG AVEN+QGE LGVVSD+MDNGAHPIL+V P Sbjct: 91 GTVVSISRKHFPALDDNEFYWVDLIGSAVENLQGEHLGVVSDMMDNGAHPILKVTAPVQD 150 Query: 118 ------PA-----EAGVEADSKAAAEILIPYVDQFVKTVSLADKKIVVDWGLDY 160 PA + G + S AA+E+LIP+VDQFVKTV ++KKI+VDW DY Sbjct: 151 TAPELDPAADAKPKKGAKEKSAAASEMLIPFVDQFVKTVQQSEKKIIVDWDKDY 204