BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0157.p         (153 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774940.1| two component sensor histidine kinase [Herba...   159   1e-37
ref|YP_004751843.1| periplasmic sensor signal transduction histi...   119   2e-25
ref|ZP_08274599.1| Signal transduction histidine kinase [Oxaloba...   118   3e-25

>ref|YP_003774940.1| two component sensor histidine kinase [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ63032.1| two component sensor histidine kinase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 465

 Score =  159 bits (403), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 75/133 (56%), Positives = 99/133 (74%), Gaps = 6/133 (4%)

Query: 8   LREFVGSIGNRVFLILLAGILVATVTTTWLASNERRNTMRELRYQHVAERVEQVVQALDP 67
           ++ F+GSIGNR+F +LL GI+VA   T WLA NERRNT+RELR+QH+A+RVEQ+VQA+D 
Sbjct: 1   MKNFLGSIGNRIFFLLLGGIVVAVFATNWLAGNERRNTLRELRFQHLADRVEQIVQAVDN 60

Query: 68  LTPQARDVVLHAADNFGFEAGFVNEVGDM------QSPSTGPMADMLKSRLGEDRQIVVQ 121
           + P  R +VL AA NFGFEA  V ++ D        SPST P+ +ML++RLGEDR+I VQ
Sbjct: 61  IPPAQRPIVLQAASNFGFEARMVEDMNDAIGPDASPSPSTSPLTEMLQARLGEDRKIAVQ 120

Query: 122 RETDCAPRRPRNA 134
           RE++C P R  +A
Sbjct: 121 RESECPPLRTDDA 133


>ref|YP_004751843.1| periplasmic sensor signal transduction histidine kinase [Collimonas
           fungivorans Ter331]
 gb|AEK61020.1| periplasmic sensor signal transduction histidine kinase [Collimonas
           fungivorans Ter331]
          Length = 455

 Score =  119 bits (297), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/128 (47%), Positives = 82/128 (64%), Gaps = 5/128 (3%)

Query: 8   LREFVGSIGNRVFLILLAGILVATVTTTWLASNERRNTMRELRYQHVAERVEQVVQALDP 67
           +R F GS+ NRVFLILL GILVA  TT+WLA NERR   ++     +AERVEQ+V +LD 
Sbjct: 4   VRNFFGSVANRVFLILLTGILVAAATTSWLAENERRKAFKDFYEFRIAERVEQIVFSLDN 63

Query: 68  LTPQARDVVLHAADNFGFEAGFVNEVGDM--QSPSTGPMADMLKSRLGEDRQIVVQRETD 125
           + P  R VVL  ++NFG EA  V +  +    +PS   +  +LK RLG+DR I+V +++D
Sbjct: 64  VGPDMRSVVLQTSENFGLEASMVKDTENAVDDNPS---LTLLLKKRLGDDRSILVDKQSD 120

Query: 126 CAPRRPRN 133
           C     RN
Sbjct: 121 CKLHTRRN 128


>ref|ZP_08274599.1| Signal transduction histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF31932.1| Signal transduction histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 457

 Score =  118 bits (296), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 62/125 (49%), Positives = 81/125 (64%), Gaps = 1/125 (0%)

Query: 8   LREFVGSIGNRVFLILLAGILVATVTTTWLASNERRNTMRELRYQHVAERVEQVVQALDP 67
           ++ F+GSI NRVF+ILLAGILVAT  T  LA  ER   M ++R  H AERV Q+V ALD 
Sbjct: 1   MKNFLGSIANRVFVILLAGILVATGVTAMLAEREREGAMNQMRLNHSAERVVQLVVALDQ 60

Query: 68  LTPQARDVVLHAADNFGFEAGFVNEVGDMQSPSTGPMADMLKSRLGEDRQIVVQRETDCA 127
             P+ R V+L  A NFG  A   +++ +    S G + D+LKSRLG  RQIV++++T C 
Sbjct: 61  AAPEVRPVILQTATNFGVAASMADDL-EALGGSDGALVDLLKSRLGLHRQIVLKQQTGCQ 119

Query: 128 PRRPR 132
           PR  R
Sbjct: 120 PRLAR 124