BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0156.p (245 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774941.1| two component transcription regulator protei... 440 e-121 ref|YP_004751842.1| two-component response regulator [Collimonas... 424 e-117 ref|ZP_08274600.1| Two-component response regulator [Oxalobacter... 395 e-108 ref|YP_002354900.1| winged helix family two component transcript... 328 4e-88 emb|CAZ89725.1| Transcriptional regulatory protein ompR [Thiomon... 322 4e-86 >ref|YP_003774941.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63033.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 248 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 216/245 (88%), Positives = 233/245 (95%) Query: 1 MAAMDTNSHILVVDDDREIRTLLAEYLDANGFRTLTATNGADMRKVLDESRVDLIVLDLT 60 M MDTN+HILVVDDDR+IRTLLAEYLD+NG RTLTATNG++MR+VL+ESRVDLIVLDLT Sbjct: 1 MRPMDTNTHILVVDDDRDIRTLLAEYLDSNGLRTLTATNGSEMRRVLEESRVDLIVLDLT 60 Query: 61 LPGEDGLTLCRNLRAQSNVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRS 120 LPGEDGLTLCRNLRA S+VPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRS Sbjct: 61 LPGEDGLTLCRNLRATSSVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRS 120 Query: 121 VLRRTQALPPSMMRPEAKTMHFSGWTLDLTARHLLNPEGVVVALSGAEFRMLKVFLDHPN 180 VLRRTQALPP+M +P+ M F+GWTLDLTARHL+N +GVVVALSGAEFR+LKVFLDHPN Sbjct: 121 VLRRTQALPPNMAQPDVAAMRFAGWTLDLTARHLVNRDGVVVALSGAEFRLLKVFLDHPN 180 Query: 181 RILNRDQLLELTQGREADPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLATTVT 240 R+LNRDQLLELTQGRE+DPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLATTVT Sbjct: 181 RVLNRDQLLELTQGRESDPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLATTVT 240 Query: 241 LEDAG 245 E AG Sbjct: 241 TEGAG 245 >ref|YP_004751842.1| two-component response regulator [Collimonas fungivorans Ter331] gb|AEK61019.1| Two-component response regulator [Collimonas fungivorans Ter331] Length = 330 Score = 424 bits (1091), Expect = e-117, Method: Compositional matrix adjust. Identities = 206/239 (86%), Positives = 223/239 (93%) Query: 4 MDTNSHILVVDDDREIRTLLAEYLDANGFRTLTATNGADMRKVLDESRVDLIVLDLTLPG 63 M+T +HILVVDDD EIRTLLAEYLDANGFRTL ATNG DMRK+L E+RVDL+VLDLTLPG Sbjct: 91 METAAHILVVDDDHEIRTLLAEYLDANGFRTLMATNGNDMRKILSEARVDLVVLDLTLPG 150 Query: 64 EDGLTLCRNLRAQSNVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLR 123 EDGLTLCRNLRA SN+PVIMLTARGEPLDRILGLEMGADDYL+KPFEPRELFARIRSVLR Sbjct: 151 EDGLTLCRNLRADSNIPVIMLTARGEPLDRILGLEMGADDYLSKPFEPRELFARIRSVLR 210 Query: 124 RTQALPPSMMRPEAKTMHFSGWTLDLTARHLLNPEGVVVALSGAEFRMLKVFLDHPNRIL 183 RTQALPP+M PEA+ + F WTLDL ARHL+N EG+VVALSGAE+R+LKVFLDHPNR+L Sbjct: 211 RTQALPPNMASPEAQQIQFGRWTLDLIARHLVNNEGLVVALSGAEYRILKVFLDHPNRVL 270 Query: 184 NRDQLLELTQGREADPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLATTVTLE 242 NRDQLLELTQGRE+DPFDRSVDIQISRLRQKLGDDARTP IIKTVRNEGYVLAT VT+E Sbjct: 271 NRDQLLELTQGRESDPFDRSVDIQISRLRQKLGDDARTPVIIKTVRNEGYVLATAVTVE 329 >ref|ZP_08274600.1| Two-component response regulator [Oxalobacteraceae bacterium IMCC9480] gb|EGF31933.1| Two-component response regulator [Oxalobacteraceae bacterium IMCC9480] Length = 242 Score = 395 bits (1014), Expect = e-108, Method: Compositional matrix adjust. Identities = 193/239 (80%), Positives = 217/239 (90%) Query: 4 MDTNSHILVVDDDREIRTLLAEYLDANGFRTLTATNGADMRKVLDESRVDLIVLDLTLPG 63 M+ + ILVVDDDR+IRTLLA+YLD NGFRT TA+NG +MRK+LD +R+DL+VLDLTLPG Sbjct: 1 MENPTQILVVDDDRDIRTLLADYLDGNGFRTFTASNGTEMRKMLDTARIDLVVLDLTLPG 60 Query: 64 EDGLTLCRNLRAQSNVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLR 123 EDGLTLCRNLRAQS++PVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLR Sbjct: 61 EDGLTLCRNLRAQSSLPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLR 120 Query: 124 RTQALPPSMMRPEAKTMHFSGWTLDLTARHLLNPEGVVVALSGAEFRMLKVFLDHPNRIL 183 RT ALPP+M EA +M F W LDL ARHL+ +G VVALSGAEFR+LKVFL+HPNR+L Sbjct: 121 RTNALPPNMALSEAHSMLFDTWRLDLMARHLVMEDGTVVALSGAEFRLLKVFLEHPNRVL 180 Query: 184 NRDQLLELTQGREADPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLATTVTLE 242 NRDQLLELT+GR+ADPFDRSVDIQISRLRQKLGDDARTP IIKTVRNEGYVL+ TV++E Sbjct: 181 NRDQLLELTRGRDADPFDRSVDIQISRLRQKLGDDARTPRIIKTVRNEGYVLSATVSIE 239 >ref|YP_002354900.1| winged helix family two component transcriptional regulator [Thauera sp. MZ1T] gb|ACK54004.1| two component transcriptional regulator, winged helix family [Thauera sp. MZ1T] Length = 256 Score = 328 bits (841), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 163/248 (65%), Positives = 199/248 (80%), Gaps = 7/248 (2%) Query: 4 MDTNSHILVVDDDREIRTLLAEYLDANGFRTLTATNGADMRKVLDESRVDLIVLDLTLPG 63 M+T+ HIL+VDDDR+IR LLA+YL+ G R TA +G +M+ L+ R+DLIVLDL +PG Sbjct: 1 MNTSDHILIVDDDRDIRQLLADYLEKQGLRCTTAADGREMKAALETHRIDLIVLDLMMPG 60 Query: 64 EDGLTLCRNLRA----QSNVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIR 119 EDGLTLCRNLRA +N P++MLTARGE +DRI+GLEMGADDYLAKPF PRELFARIR Sbjct: 61 EDGLTLCRNLRASGGPHANTPILMLTARGEDMDRIIGLEMGADDYLAKPFVPRELFARIR 120 Query: 120 SVLRRTQALPPSM-MRP--EAKTMHFSGWTLDLTARHLLNPEGVVVALSGAEFRMLKVFL 176 +VLRRT+ALPP++ P A+ + F+ W LD RHL++ EG VVALSGAE+RML VFL Sbjct: 121 AVLRRTRALPPNLDAAPPANARLLRFAHWRLDTINRHLVDAEGTVVALSGAEYRMLAVFL 180 Query: 177 DHPNRILNRDQLLELTQGREADPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLA 236 HP ++L+RDQL+ELTQGREAD FDRS+D+ +SRLRQ+LGD+AR P IIKTVRNEGYVLA Sbjct: 181 SHPQKVLSRDQLMELTQGREADVFDRSIDLLVSRLRQRLGDNAREPAIIKTVRNEGYVLA 240 Query: 237 TTVTLEDA 244 V E A Sbjct: 241 AEVVAETA 248 >emb|CAZ89725.1| Transcriptional regulatory protein ompR [Thiomonas sp. 3As] Length = 240 Score = 322 bits (824), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 153/236 (64%), Positives = 189/236 (80%) Query: 4 MDTNSHILVVDDDREIRTLLAEYLDANGFRTLTATNGADMRKVLDESRVDLIVLDLTLPG 63 M+T+ HIL+VDDD EIR LL+ YL NG R +G M + L S VDLIVLDL LPG Sbjct: 1 METSDHILIVDDDAEIRRLLSAYLQKNGLRVTAVGDGKAMERALLASGVDLIVLDLMLPG 60 Query: 64 EDGLTLCRNLRAQSNVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLR 123 +DGLTLCRNLRA+S++P++MLTARGE DRI+GLEMGADDYL KPF REL ARI+ +LR Sbjct: 61 DDGLTLCRNLRAKSDIPILMLTARGEETDRIVGLEMGADDYLPKPFSARELLARIKVILR 120 Query: 124 RTQALPPSMMRPEAKTMHFSGWTLDLTARHLLNPEGVVVALSGAEFRMLKVFLDHPNRIL 183 R ++LP ++ EA+ + F+GWTLD RHL++P GVVVALSGAE+R+L+VFL HPNR+L Sbjct: 121 RARSLPRNLQPEEARQVRFAGWTLDTAHRHLVSPAGVVVALSGAEYRLLRVFLSHPNRVL 180 Query: 184 NRDQLLELTQGREADPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLATTV 239 NRDQL++LTQGREADP DRS+D+Q+SRLRQ+LGDD R P +IKTVR GYVL+ V Sbjct: 181 NRDQLVDLTQGREADPLDRSIDVQVSRLRQRLGDDPRDPALIKTVRGAGYVLSAPV 236