BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0153.p (500 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774943.1| RND family efflux transporter MFP subunit [H... 634 e-179 ref|YP_004751840.1| putative resistance transmembrane protein [C... 536 e-150 ref|ZP_07673605.1| multidrug RND efflux transporter, membrane fu... 432 e-119 gb|AEG71461.1| multidrug efflux system, subunit a [Ralstonia sol... 430 e-118 ref|YP_001892710.1| efflux transporter, RND family, MFP subunit ... 429 e-118 >ref|YP_003774943.1| RND family efflux transporter MFP subunit [Herbaspirillum seropedicae SmR1] gb|ADJ63035.1| efflux transporter, RND family, MFP subunit protein [Herbaspirillum seropedicae SmR1] Length = 466 Score = 634 bits (1634), Expect = e-179, Method: Compositional matrix adjust. Identities = 312/422 (73%), Positives = 361/422 (85%), Gaps = 8/422 (1%) Query: 64 PVGVAVARISDVNIYLTGLGGVTPTATATVRSRVDGQLMKLHFKEGQLVKEGDLLAELDA 123 PVGVA AR+ DVN++L GLG VTPTATATVR+RVDGQLMKLH+KEGQ+VK GDLLAE+D Sbjct: 33 PVGVAKARLQDVNVFLNGLGAVTPTATATVRARVDGQLMKLHYKEGQVVKAGDLLAEIDP 92 Query: 124 RPYQVAVTQAEGQLARDQAQLGAARLDLQRYRTLLSQDSIASQQVDTQAALVKQLEGTVK 183 R Q A+TQAEGQLARD+A L +ARLDL+RY+TLL+QDSIASQQVDTQ ALVKQ EGTVK Sbjct: 93 RSLQAALTQAEGQLARDRALLASARLDLKRYQTLLAQDSIASQQVDTQVALVKQYEGTVK 152 Query: 184 SDQGNLASARLQLTYSRVTAPVSGRLGLRQVDIGNIVHSSDTNGIVIITQVQPITAVFSI 243 +D+GN+ASARLQL+++RVTAP+SGRLGLRQ D+GN V +SDTNG+VIITQ+QPITA+FSI Sbjct: 153 ADEGNVASARLQLSFTRVTAPISGRLGLRQADVGNNVTTSDTNGLVIITQLQPITAIFSI 212 Query: 244 PEDNIPAVMKQLQAGKKLPTDAWDRDQKNKLASGMLLTIDNQVDATTGTIKLKAQFPNTD 303 PEDNIP V++QLQ+G+KLP AWDR+QKNKLA G+LLTIDN VDATTGT+KLKAQFPNTD Sbjct: 213 PEDNIPKVLQQLQSGRKLPAQAWDREQKNKLADGVLLTIDNVVDATTGTVKLKAQFPNTD 272 Query: 304 YALFPNQFVNIRMLLDTRKDAVTIPTAALQRGSKGLFVYVVKSDNTVTVRNVKTGPAQGD 363 YALFP+QFVNIR+ L+T + A IPTAA+QRGSKGLFVYVVK D++VTVR VKTGP Q D Sbjct: 273 YALFPSQFVNIRLQLNTEQGATVIPTAAIQRGSKGLFVYVVKDDSSVTVRPVKTGPVQDD 332 Query: 364 ITAIEDGVASGETVVVDGIDRLREGAKVEPVVRGGADDPANKLTEKAGPRRHKRDGAAG- 422 +T I DGV++GETVV+DGIDRLREGAKVE V RGGADDPANKLT + RRH + G Sbjct: 333 LTVITDGVSAGETVVIDGIDRLREGAKVEAVARGGADDPANKLTTENPERRHGKRGQGNP 392 Query: 423 -------EAQSGQGGQDMTPEERQKRWAELNKRIDAGEFGEEIKKLPEDQRRQRMMEMRR 475 M+PEERQKRWAELNKRIDAGEFGEEIKKLPEDQRRQ+MME+RR Sbjct: 393 GAQAGAGGDAGQGAQGGMSPEERQKRWAELNKRIDAGEFGEEIKKLPEDQRRQKMMELRR 452 Query: 476 QQ 477 Q+ Sbjct: 453 QR 454 >ref|YP_004751840.1| putative resistance transmembrane protein [Collimonas fungivorans Ter331] gb|AEK61017.1| putative resistance transmembrane protein [Collimonas fungivorans Ter331] Length = 488 Score = 536 bits (1380), Expect = e-150, Method: Compositional matrix adjust. Identities = 265/339 (78%), Positives = 298/339 (87%) Query: 58 GGMGLSPVGVAVARISDVNIYLTGLGGVTPTATATVRSRVDGQLMKLHFKEGQLVKEGDL 117 G G PVGVAVA+ D+ IYL+GLG VTP ATATV+SRV+GQLMKLHFKEGQ+VK GDL Sbjct: 87 GAGGPLPVGVAVAKTGDIRIYLSGLGSVTPEATATVKSRVNGQLMKLHFKEGQVVKAGDL 146 Query: 118 LAELDARPYQVAVTQAEGQLARDQAQLGAARLDLQRYRTLLSQDSIASQQVDTQAALVKQ 177 LAELD RPYQVAVTQAEGQL RD A L AA++DLQRYRTLL+QDSIASQQVDTQAALVKQ Sbjct: 147 LAELDPRPYQVAVTQAEGQLIRDTALLKAAQIDLQRYRTLLAQDSIASQQVDTQAALVKQ 206 Query: 178 LEGTVKSDQGNLASARLQLTYSRVTAPVSGRLGLRQVDIGNIVHSSDTNGIVIITQVQPI 237 EGTV+SDQG L SARLQLTYSRVTAP+ GR+GLRQVD+GNIV SSDTNGI IITQ+QPI Sbjct: 207 YEGTVRSDQGALDSARLQLTYSRVTAPIGGRIGLRQVDLGNIVQSSDTNGIAIITQLQPI 266 Query: 238 TAVFSIPEDNIPAVMKQLQAGKKLPTDAWDRDQKNKLASGMLLTIDNQVDATTGTIKLKA 297 T+VFSIPEDNIP+VMKQ+QAGKKL TD WDRDQKNKL SG LLTIDNQVD+TTGT+KLKA Sbjct: 267 TSVFSIPEDNIPSVMKQIQAGKKLATDVWDRDQKNKLDSGTLLTIDNQVDSTTGTVKLKA 326 Query: 298 QFPNTDYALFPNQFVNIRMLLDTRKDAVTIPTAALQRGSKGLFVYVVKSDNTVTVRNVKT 357 +FPN YALFP+QFVN+RMLLDTR+DA IP AA+QRGS G FVYVVK D+TVT+R V Sbjct: 327 EFPNAGYALFPSQFVNVRMLLDTRRDATVIPNAAIQRGSSGNFVYVVKPDHTVTIRLVTA 386 Query: 358 GPAQGDITAIEDGVASGETVVVDGIDRLREGAKVEPVVR 396 GP +G+ TAI+ G+A GETVV+DGID+L+EGAKVEPV R Sbjct: 387 GPVEGESTAIDKGIAVGETVVIDGIDKLKEGAKVEPVTR 425 >ref|ZP_07673605.1| multidrug RND efflux transporter, membrane fusion protein MdtA [Ralstonia sp. 5_7_47FAA] gb|EFP67984.1| multidrug RND efflux transporter, membrane fusion protein MdtA [Ralstonia sp. 5_7_47FAA] Length = 462 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 220/392 (56%), Positives = 283/392 (72%), Gaps = 13/392 (3%) Query: 3 KRWWFWALLVILVGGGYYYWHHKRAAAAEQAQNGGGQWQGGGGKGKRGGPPGGGFGGMGL 62 +RW W ++V+LV Y +H K A +GG +G K Sbjct: 44 RRWGIWLVIVLLVLICYAVYHAKYRNAGGPGSSGGPGGRGASMANKP------------- 90 Query: 63 SPVGVAVARISDVNIYLTGLGGVTPTATATVRSRVDGQLMKLHFKEGQLVKEGDLLAELD 122 PV V A D+N+ L+ LG VTP TV++RVDGQL++L F EGQ VK GDLLAE+D Sbjct: 91 MPVMVGTAVKGDINVVLSALGNVTPVNNVTVKTRVDGQLVRLAFTEGQTVKAGDLLAEVD 150 Query: 123 ARPYQVAVTQAEGQLARDQAQLGAARLDLQRYRTLLSQDSIASQQVDTQAALVKQLEGTV 182 R YQ + QAEGQLARDQA L A+LDLQRY+TLLSQDSI+ QQVDTQAALV+Q +GTV Sbjct: 151 PRTYQAQLAQAEGQLARDQALLQNAKLDLQRYQTLLSQDSISKQQVDTQAALVRQYDGTV 210 Query: 183 KSDQGNLASARLQLTYSRVTAPVSGRLGLRQVDIGNIVHSSDTNGIVIITQVQPITAVFS 242 K DQGN+ +AR+QL+Y+R+TAPVSGR+GLRQVD GNIVH+SDTNGIV+ITQ+ PIT ++S Sbjct: 211 KLDQGNVDNARVQLSYTRITAPVSGRVGLRQVDPGNIVHASDTNGIVVITQIDPITVIYS 270 Query: 243 IPEDNIPAVMKQLQAGKKLPTDAWDRDQKNKLASGMLLTIDNQVDATTGTIKLKAQFPNT 302 IPEDN+P VM +LQ+G KLP +AWDR Q +LA G+L+T+DN +D TTGT+KL+AQFPN Sbjct: 271 IPEDNLPKVMPRLQSGDKLPVEAWDRGQTTQLARGVLMTVDNTIDNTTGTVKLRAQFPNQ 330 Query: 303 DYALFPNQFVNIRMLLDTRKDAVTIPTAALQRGSKGLFVYVVKSDNTVTVRNVKTGPAQG 362 + LFPNQFVN+RM +DT +D V +P AA+QRG++G FVYVV DN V +R VK G +G Sbjct: 331 NAMLFPNQFVNVRMRVDTLRDVVIVPGAAIQRGTQGTFVYVVGEDNKVALRLVKLGVTEG 390 Query: 363 DITAIEDGVASGETVVVDGIDRLREGAKVEPV 394 + ++ G+ GE VV+DG D+LR+G+ VE + Sbjct: 391 ERVSVAQGLQPGERVVIDGADKLRDGSPVEVI 422 >gb|AEG71461.1| multidrug efflux system, subunit a [Ralstonia solanacearum Po82] Length = 445 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 231/428 (53%), Positives = 290/428 (67%), Gaps = 17/428 (3%) Query: 3 KRWWFWALLVILVGGGYYYWHHKRAAAAEQAQNGGGQWQGGGGKGKRGGPPGGGFGGMGL 62 +RW W LV+L GY +H A +++ G GG G G P Sbjct: 32 RRWILWVALVVLALIGYAVFH-----AVQRSTGAGKGGPGGRGAAMAGKP---------- 76 Query: 63 SPVGVAVARISDVNIYLTGLGGVTPTATATVRSRVDGQLMKLHFKEGQLVKEGDLLAELD 122 PV VA A D+N+ LT LG VTP TV++RVDGQL++L F EGQ VK GDLLAE+D Sbjct: 77 MPVMVATAAKGDINVVLTALGNVTPVNNVTVKTRVDGQLVRLAFTEGQTVKAGDLLAEID 136 Query: 123 ARPYQVAVTQAEGQLARDQAQLGAARLDLQRYRTLLSQDSIASQQVDTQAALVKQLEGTV 182 R YQ + QAEGQLARD A L ARLDLQRY+TL++QDSIA QQVDTQA+LV+Q EGTV Sbjct: 137 PRAYQAQLAQAEGQLARDSALLQNARLDLQRYQTLMAQDSIAKQQVDTQASLVRQYEGTV 196 Query: 183 KSDQGNLASARLQLTYSRVTAPVSGRLGLRQVDIGNIVHSSDTNGIVIITQVQPITAVFS 242 K DQGN +AR+QL+Y+R+TAPVSGR+GLRQVD GNIVH+SDT GIV+ITQ+ PIT +++ Sbjct: 197 KLDQGNADNARVQLSYTRITAPVSGRVGLRQVDPGNIVHASDTTGIVVITQIDPITVIYT 256 Query: 243 IPEDNIPAVMKQLQAGKKLPTDAWDRDQKNKLASGMLLTIDNQVDATTGTIKLKAQFPNT 302 +PED +P VM +LQAG KLP +AWDR Q N LA G L+T+DN +D TTGT+KL+AQFPN Sbjct: 257 LPEDTLPKVMPRLQAGDKLPVEAWDRGQTNLLAHGTLMTVDNTIDNTTGTVKLRAQFPNQ 316 Query: 303 DYALFPNQFVNIRMLLDTRKDAVTIPTAALQRGSKGLFVYVVKSDNTVTVRNVKTGPAQG 362 + ALFPNQFVN+RM +DT D V +P AA+QRG++G FVY V +D V +R VK G +G Sbjct: 317 NAALFPNQFVNVRMRVDTLHDQVILPGAAIQRGTQGTFVYAVGADGNVALRIVKLGATEG 376 Query: 363 DITAIEDGVASGETVVVDGIDRLREGAKVEPVV--RGGADDPANKLTEKAGPRRHKRDGA 420 D +I G+ GE VV+DG D+LR+G+ VE + G A PA H+R G Sbjct: 377 DRVSIAQGLNPGERVVIDGADKLRDGSPVEVIQPDAGPASAPATAQGSHGAQGGHRRHGG 436 Query: 421 AGEAQSGQ 428 A + Q Sbjct: 437 ASAPTAAQ 444 >ref|YP_001892710.1| efflux transporter, RND family, MFP subunit [Ralstonia pickettii 12J] ref|YP_002984211.1| RND family efflux transporter MFP subunit [Ralstonia pickettii 12D] gb|ACD29283.1| efflux transporter, RND family, MFP subunit [Ralstonia pickettii 12J] gb|ACS65539.1| efflux transporter, RND family, MFP subunit [Ralstonia pickettii 12D] Length = 462 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 221/390 (56%), Positives = 282/390 (72%), Gaps = 13/390 (3%) Query: 3 KRWWFWALLVILVGGGYYYWHHKRAAAAEQAQNGGGQWQGGGGKGKRGGPPGGGFGGMGL 62 +RW W ++ +LV GY +H K A GG +G GK Sbjct: 44 RRWGIWVVITLLVLIGYAVYHAKYRDAGGPGGRGGAGGRGAAMAGKP------------- 90 Query: 63 SPVGVAVARISDVNIYLTGLGGVTPTATATVRSRVDGQLMKLHFKEGQLVKEGDLLAELD 122 PV V A D+N+ L+ LG VTP TV++RVDGQL++L F EGQ VK GDLLAE+D Sbjct: 91 MPVMVGTAIKGDINVVLSALGNVTPVNNVTVKTRVDGQLVRLAFTEGQTVKAGDLLAEVD 150 Query: 123 ARPYQVAVTQAEGQLARDQAQLGAARLDLQRYRTLLSQDSIASQQVDTQAALVKQLEGTV 182 R YQ + QAEGQLARDQA L A+LDLQRY+TLLSQDSI+ QQVDTQAALV+Q +GTV Sbjct: 151 PRTYQAQLAQAEGQLARDQALLHNAKLDLQRYQTLLSQDSISKQQVDTQAALVRQYDGTV 210 Query: 183 KSDQGNLASARLQLTYSRVTAPVSGRLGLRQVDIGNIVHSSDTNGIVIITQVQPITAVFS 242 K DQGN+ +AR+QL+Y+R+TAPVSGR+GLRQVD GNIVH+SDTNGIV+ITQ+ PIT ++S Sbjct: 211 KLDQGNVDNARVQLSYTRITAPVSGRVGLRQVDPGNIVHASDTNGIVVITQIDPITVIYS 270 Query: 243 IPEDNIPAVMKQLQAGKKLPTDAWDRDQKNKLASGMLLTIDNQVDATTGTIKLKAQFPNT 302 IPEDN+P VM +LQ+G KLP +AWDR Q +LA G+L+T+DN +D TTGT+KL+AQFPN Sbjct: 271 IPEDNLPKVMPRLQSGDKLPVEAWDRGQTTQLARGVLMTVDNTIDNTTGTVKLRAQFPNQ 330 Query: 303 DYALFPNQFVNIRMLLDTRKDAVTIPTAALQRGSKGLFVYVVKSDNTVTVRNVKTGPAQG 362 + LFPNQFVN+RM +DT +D V +P AA+QRG++G FVYVV +N V +R VK G +G Sbjct: 331 NAMLFPNQFVNVRMRVDTLRDVVIVPGAAIQRGTQGTFVYVVGDNNKVALRLVKLGVTEG 390 Query: 363 DITAIEDGVASGETVVVDGIDRLREGAKVE 392 D ++ G+ GE VV+DG D+LR+G+ VE Sbjct: 391 DRVSVAQGLQPGERVVIDGADKLRDGSPVE 420