BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0152.p (415 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774944.1| cation/multidrug efflux pump transmembrane p... 651 0.0 ref|YP_004751839.1| hypothetical protein CFU_1184 [Collimonas fu... 637 e-180 gb|AEG71460.1| multidrug efflux system, subunit b [Ralstonia sol... 557 e-156 ref|ZP_00942674.1| Transmembrane drug efflux pump [Ralstonia sol... 557 e-156 ref|YP_002257918.1| drug efflux pump transmembrane protein [Rals... 557 e-156 >ref|YP_003774944.1| cation/multidrug efflux pump transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ63036.1| cation/multidrug efflux pump transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1048 Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/356 (91%), Positives = 338/356 (94%) Query: 1 MNPSRLFILRPVATSLLMLAILLVGIVAYKQLPLSALPEVDYPTIQVVTLYPGASPDVMT 60 MNPSR FILRPVATSLLMLAILLVGIVAY+ LPLSALPEVDYPTIQVVTLYPGASPDVMT Sbjct: 1 MNPSRQFILRPVATSLLMLAILLVGIVAYRLLPLSALPEVDYPTIQVVTLYPGASPDVMT 60 Query: 61 SSVTAPLERQFGQMPGLNQMSSTSSGGASVITLQFNLDLSLDIAEQEVQAAINAGGNLLP 120 SSVTAPLERQFGQMPGL QMSSTSSGGASVITLQFNLDLSLDIAEQEVQAAINAG NLLP Sbjct: 61 SSVTAPLERQFGQMPGLKQMSSTSSGGASVITLQFNLDLSLDIAEQEVQAAINAGSNLLP 120 Query: 121 SDLPAPPIYSKVNPADTPILTLAVTSRTLPLPRVQDLIDTRLAQKISQLSGVGLVSLSGG 180 SDLP PP+YSKVNPADTPI+TLAVTS T+PLP+VQDLIDTR+AQKISQLSGVGLVSLSGG Sbjct: 121 SDLPMPPVYSKVNPADTPIITLAVTSNTMPLPKVQDLIDTRIAQKISQLSGVGLVSLSGG 180 Query: 181 QRPAVRMQLNPRAIAALGMNLDDIRTAIGNANVNQAKGSFDGPARASTIDANDQLKSADE 240 QRPAVRMQLNPRA+AALG+NLDD+RTAIGNANVNQAKGSFDGP RASTIDANDQL+SADE Sbjct: 181 QRPAVRMQLNPRAVAALGLNLDDVRTAIGNANVNQAKGSFDGPTRASTIDANDQLRSADE 240 Query: 241 YRNLIIGYKNGAPIRVSDVADVVDAAENVRLGAWANDSAAVIVNIQRQPGANVIAVVDSI 300 YRNLII YKNGAPIRVSDVADVVD AENVRLGAWAN AVIVNIQRQPGANVIAVVDSI Sbjct: 241 YRNLIIAYKNGAPIRVSDVADVVDGAENVRLGAWANTQPAVIVNIQRQPGANVIAVVDSI 300 Query: 301 KKILPTLQASLPGAIDVHILTDRTTTIRASVDDVKFELLLSIVLVVMVIXELLLSI 356 KKILP LQASLPGAIDVHILTDRTTTIRASVDDVKFELLLS+ LVVMVI L ++ Sbjct: 301 KKILPQLQASLPGAIDVHILTDRTTTIRASVDDVKFELLLSVALVVMVIFVFLRNV 356 >ref|YP_004751839.1| hypothetical protein CFU_1184 [Collimonas fungivorans Ter331] gb|AEK61016.1| hypothetical protein CFU_1184 [Collimonas fungivorans Ter331] Length = 1052 Score = 637 bits (1642), Expect = e-180, Method: Compositional matrix adjust. Identities = 317/356 (89%), Positives = 336/356 (94%) Query: 1 MNPSRLFILRPVATSLLMLAILLVGIVAYKQLPLSALPEVDYPTIQVVTLYPGASPDVMT 60 MNPSR FILRPVATSLLMLAI L GIVAYKQLPLSALPEVDYPTIQVVTLYPGASPDVMT Sbjct: 1 MNPSRQFILRPVATSLLMLAIFLAGIVAYKQLPLSALPEVDYPTIQVVTLYPGASPDVMT 60 Query: 61 SSVTAPLERQFGQMPGLNQMSSTSSGGASVITLQFNLDLSLDIAEQEVQAAINAGGNLLP 120 SSVTAPLERQFGQMPGLNQMSSTSSGGASVITLQF+LDLSLDIAEQEVQAAINAGGNLLP Sbjct: 61 SSVTAPLERQFGQMPGLNQMSSTSSGGASVITLQFSLDLSLDIAEQEVQAAINAGGNLLP 120 Query: 121 SDLPAPPIYSKVNPADTPILTLAVTSRTLPLPRVQDLIDTRLAQKISQLSGVGLVSLSGG 180 SDLP PPIY+KVNPADTPI++LA+TS+TLPLP+VQDLIDTRLAQKISQ+ GVGLVSLSGG Sbjct: 121 SDLPTPPIYNKVNPADTPIMSLAITSKTLPLPKVQDLIDTRLAQKISQVPGVGLVSLSGG 180 Query: 181 QRPAVRMQLNPRAIAALGMNLDDIRTAIGNANVNQAKGSFDGPARASTIDANDQLKSADE 240 QRPAVR+QLNPRAIAALG+NLDDIRTAIGNANVNQAKGSFDGPARASTIDANDQL+SADE Sbjct: 181 QRPAVRLQLNPRAIAALGLNLDDIRTAIGNANVNQAKGSFDGPARASTIDANDQLRSADE 240 Query: 241 YRNLIIGYKNGAPIRVSDVADVVDAAENVRLGAWANDSAAVIVNIQRQPGANVIAVVDSI 300 YRNLII YKNGAPIR+SDVADVVD AEN+RL AW+N S AVI+NIQRQPGANVI VVD+I Sbjct: 241 YRNLIIAYKNGAPIRISDVADVVDDAENIRLAAWSNTSPAVILNIQRQPGANVIGVVDNI 300 Query: 301 KKILPTLQASLPGAIDVHILTDRTTTIRASVDDVKFELLLSIVLVVMVIXELLLSI 356 KKILP LQ +LPGAIDV ILTDRTTTIRASV DV+FELLLSI LVVMVI L S+ Sbjct: 301 KKILPKLQETLPGAIDVQILTDRTTTIRASVADVQFELLLSIALVVMVIFIFLRSV 356 >gb|AEG71460.1| multidrug efflux system, subunit b [Ralstonia solanacearum Po82] Length = 1048 Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust. Identities = 269/356 (75%), Positives = 318/356 (89%) Query: 1 MNPSRLFILRPVATSLLMLAILLVGIVAYKQLPLSALPEVDYPTIQVVTLYPGASPDVMT 60 MNPSR+FILRPVAT+LLM+AILL G+VAY+ LPLSALPEVDYPTIQV TLYPGASPDVMT Sbjct: 1 MNPSRIFILRPVATTLLMVAILLSGLVAYRMLPLSALPEVDYPTIQVTTLYPGASPDVMT 60 Query: 61 SSVTAPLERQFGQMPGLNQMSSTSSGGASVITLQFNLDLSLDIAEQEVQAAINAGGNLLP 120 SS+TAPLERQFGQMPGL QM+S+SSGGASVITLQF+L LSLDIAEQEVQAAINA GNLLP Sbjct: 61 SSITAPLERQFGQMPGLKQMTSSSSGGASVITLQFDLSLSLDIAEQEVQAAINAAGNLLP 120 Query: 121 SDLPAPPIYSKVNPADTPILTLAVTSRTLPLPRVQDLIDTRLAQKISQLSGVGLVSLSGG 180 +DLP PPIYSKVNPAD PILTLA+TS+TLPLP+++D++DTR+AQK+SQL G+GLVS+SGG Sbjct: 121 TDLPMPPIYSKVNPADAPILTLAITSKTLPLPKLEDIVDTRVAQKLSQLPGIGLVSISGG 180 Query: 181 QRPAVRMQLNPRAIAALGMNLDDIRTAIGNANVNQAKGSFDGPARASTIDANDQLKSADE 240 QRPAVR+Q N +A+AALG+++DDIRTAIGNANVN AKGSFDGP RASTIDANDQL+SA E Sbjct: 181 QRPAVRIQANTQALAALGLSIDDIRTAIGNANVNGAKGSFDGPLRASTIDANDQLRSAAE 240 Query: 241 YRNLIIGYKNGAPIRVSDVADVVDAAENVRLGAWANDSAAVIVNIQRQPGANVIAVVDSI 300 Y +I+ YKNGAPIR++DVA ++D AEN +L AWAN + A+I+N+QRQPGANVI VV+ Sbjct: 241 YSTMIVAYKNGAPIRLTDVAQIIDGAENSKLAAWANATPAIILNVQRQPGANVIDVVNRA 300 Query: 301 KKILPTLQASLPGAIDVHILTDRTTTIRASVDDVKFELLLSIVLVVMVIXELLLSI 356 K +LP L+ +LP IDV +LTDRTTTIRASV DV+FEL+LS+ LVVMVI L ++ Sbjct: 301 KALLPQLKDTLPATIDVAVLTDRTTTIRASVADVQFELMLSVALVVMVIFLFLRNV 356 >ref|ZP_00942674.1| Transmembrane drug efflux pump [Ralstonia solanacearum UW551] gb|EAP74813.1| Transmembrane drug efflux pump [Ralstonia solanacearum UW551] Length = 1048 Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust. Identities = 269/356 (75%), Positives = 318/356 (89%) Query: 1 MNPSRLFILRPVATSLLMLAILLVGIVAYKQLPLSALPEVDYPTIQVVTLYPGASPDVMT 60 MNPSR+FILRPVAT+LLM+AILL G+VAY+ LPLSALPEVDYPTIQV TLYPGASPDVMT Sbjct: 1 MNPSRIFILRPVATTLLMVAILLSGLVAYRMLPLSALPEVDYPTIQVTTLYPGASPDVMT 60 Query: 61 SSVTAPLERQFGQMPGLNQMSSTSSGGASVITLQFNLDLSLDIAEQEVQAAINAGGNLLP 120 SS+TAPLERQFGQMPGL QM+S+SSGGASVITLQF+L LSLDIAEQEVQAAINA GNLLP Sbjct: 61 SSITAPLERQFGQMPGLKQMTSSSSGGASVITLQFDLSLSLDIAEQEVQAAINAAGNLLP 120 Query: 121 SDLPAPPIYSKVNPADTPILTLAVTSRTLPLPRVQDLIDTRLAQKISQLSGVGLVSLSGG 180 +DLP PPIYSKVNPAD PILTLA+TS+TLPLP+++D++DTR+AQK+SQL G+GLVS+SGG Sbjct: 121 TDLPMPPIYSKVNPADAPILTLAITSKTLPLPKLEDIVDTRVAQKLSQLPGIGLVSISGG 180 Query: 181 QRPAVRMQLNPRAIAALGMNLDDIRTAIGNANVNQAKGSFDGPARASTIDANDQLKSADE 240 QRPAVR+Q N +A+AALG+++DDIRTAIGNANVN AKGSFDGP RASTIDANDQL+SA E Sbjct: 181 QRPAVRIQANTQALAALGLSIDDIRTAIGNANVNGAKGSFDGPLRASTIDANDQLRSAAE 240 Query: 241 YRNLIIGYKNGAPIRVSDVADVVDAAENVRLGAWANDSAAVIVNIQRQPGANVIAVVDSI 300 Y +I+ YKNGAPIR++DVA ++D AEN +L AWAN + A+I+N+QRQPGANVI VV+ Sbjct: 241 YSTMIVAYKNGAPIRLTDVAQIIDGAENSKLAAWANATPAIILNVQRQPGANVIDVVNRA 300 Query: 301 KKILPTLQASLPGAIDVHILTDRTTTIRASVDDVKFELLLSIVLVVMVIXELLLSI 356 K +LP L+ +LP IDV +LTDRTTTIRASV DV+FEL+LS+ LVVMVI L ++ Sbjct: 301 KALLPQLKDTLPATIDVAVLTDRTTTIRASVADVQFELMLSVALVVMVIFLFLRNV 356 >ref|YP_002257918.1| drug efflux pump transmembrane protein [Ralstonia solanacearum IPO1609] emb|CAQ59811.1| putative drug efflux pump transmembrane protein [Ralstonia solanacearum IPO1609] Length = 740 Score = 557 bits (1435), Expect = e-156, Method: Compositional matrix adjust. Identities = 269/356 (75%), Positives = 318/356 (89%) Query: 1 MNPSRLFILRPVATSLLMLAILLVGIVAYKQLPLSALPEVDYPTIQVVTLYPGASPDVMT 60 MNPSR+FILRPVAT+LLM+AILL G+VAY+ LPLSALPEVDYPTIQV TLYPGASPDVMT Sbjct: 1 MNPSRIFILRPVATTLLMVAILLSGLVAYRMLPLSALPEVDYPTIQVTTLYPGASPDVMT 60 Query: 61 SSVTAPLERQFGQMPGLNQMSSTSSGGASVITLQFNLDLSLDIAEQEVQAAINAGGNLLP 120 SS+TAPLERQFGQMPGL QM+S+SSGGASVITLQF+L LSLDIAEQEVQAAINA GNLLP Sbjct: 61 SSITAPLERQFGQMPGLKQMTSSSSGGASVITLQFDLSLSLDIAEQEVQAAINAAGNLLP 120 Query: 121 SDLPAPPIYSKVNPADTPILTLAVTSRTLPLPRVQDLIDTRLAQKISQLSGVGLVSLSGG 180 +DLP PPIYSKVNPAD PILTLA+TS+TLPLP+++D++DTR+AQK+SQL G+GLVS+SGG Sbjct: 121 TDLPMPPIYSKVNPADAPILTLAITSKTLPLPKLEDIVDTRVAQKLSQLPGIGLVSISGG 180 Query: 181 QRPAVRMQLNPRAIAALGMNLDDIRTAIGNANVNQAKGSFDGPARASTIDANDQLKSADE 240 QRPAVR+Q N +A+AALG+++DDIRTAIGNANVN AKGSFDGP RASTIDANDQL+SA E Sbjct: 181 QRPAVRIQANTQALAALGLSIDDIRTAIGNANVNGAKGSFDGPLRASTIDANDQLRSAAE 240 Query: 241 YRNLIIGYKNGAPIRVSDVADVVDAAENVRLGAWANDSAAVIVNIQRQPGANVIAVVDSI 300 Y +I+ YKNGAPIR++DVA ++D AEN +L AWAN + A+I+N+QRQPGANVI VV+ Sbjct: 241 YSTMIVAYKNGAPIRLTDVAQIIDGAENSKLAAWANATPAIILNVQRQPGANVIDVVNRA 300 Query: 301 KKILPTLQASLPGAIDVHILTDRTTTIRASVDDVKFELLLSIVLVVMVIXELLLSI 356 K +LP L+ +LP IDV +LTDRTTTIRASV DV+FEL+LS+ LVVMVI L ++ Sbjct: 301 KALLPQLKDTLPATIDVAVLTDRTTTIRASVADVQFELMLSVALVVMVIFLFLRNV 356