BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0145.p         (128 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774944.1| cation/multidrug efflux pump transmembrane p...   193   9e-48
ref|YP_004751839.1| hypothetical protein CFU_1184 [Collimonas fu...   182   1e-44
ref|NP_522759.1| drug efflux pump transmembrane protein [Ralston...   176   1e-42
ref|YP_001858000.1| acriflavin resistance protein [Burkholderia ...   175   2e-42
ref|YP_001892709.1| acriflavin resistance protein [Ralstonia pic...   174   3e-42

>ref|YP_003774944.1| cation/multidrug efflux pump transmembrane protein [Herbaspirillum
            seropedicae SmR1]
 gb|ADJ63036.1| cation/multidrug efflux pump transmembrane protein [Herbaspirillum
            seropedicae SmR1]
          Length = 1048

 Score =  193 bits (490), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 92/98 (93%), Positives = 96/98 (97%)

Query: 1    MIDFALEAERHEGKSPRDAIYQACLLRFRPILMTTMAALLGALPLMLGTGVGSELRQPLG 60
            MIDFALEAERHEGKSPR+AIYQACLLRFRPILMTTMAALLGALPLMLGTGVGSELRQPLG
Sbjct: 930  MIDFALEAERHEGKSPREAIYQACLLRFRPILMTTMAALLGALPLMLGTGVGSELRQPLG 989

Query: 61   ITMVGGLLVSQVLTLFTTPVIYLGFDSLAKRMRKRFGK 98
            ITMVGGLLVSQVLTLFTTPVIYLGFDSL +R+R RFG+
Sbjct: 990  ITMVGGLLVSQVLTLFTTPVIYLGFDSLGRRLRARFGQ 1027


>ref|YP_004751839.1| hypothetical protein CFU_1184 [Collimonas fungivorans Ter331]
 gb|AEK61016.1| hypothetical protein CFU_1184 [Collimonas fungivorans Ter331]
          Length = 1052

 Score =  182 bits (462), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 86/100 (86%), Positives = 96/100 (96%)

Query: 1    MIDFALEAERHEGKSPRDAIYQACLLRFRPILMTTMAALLGALPLMLGTGVGSELRQPLG 60
            MIDFAL+AER+EGK PR+AIYQACLLRFRPILMTTMAALLGALPLMLG+GVGSELRQPLG
Sbjct: 930  MIDFALDAERNEGKEPREAIYQACLLRFRPILMTTMAALLGALPLMLGSGVGSELRQPLG 989

Query: 61   ITMVGGLLVSQVLTLFTTPVIYLGFDSLAKRMRKRFGKEK 100
            ITMVGGLLVSQVLTLFTTPVIYL FD+LA+R++ RFG ++
Sbjct: 990  ITMVGGLLVSQVLTLFTTPVIYLAFDNLARRVKARFGIQE 1029


>ref|NP_522759.1| drug efflux pump transmembrane protein [Ralstonia solanacearum
            GMI1000]
 emb|CAD18349.1| probable drug efflux pump transmembrane protein [Ralstonia
            solanacearum GMI1000]
          Length = 1041

 Score =  176 bits (445), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 88/113 (77%), Positives = 94/113 (83%), Gaps = 8/113 (7%)

Query: 1    MIDFALEAERHEGKSPRDAIYQACLLRFRPILMTTMAALLGALPLMLGTGVGSELRQPLG 60
            MIDFALEAER +G +PRDAIYQACLLRFRPILMTTMAALLGALPLMLGTGVGSELRQPLG
Sbjct: 929  MIDFALEAEREQGMAPRDAIYQACLLRFRPILMTTMAALLGALPLMLGTGVGSELRQPLG 988

Query: 61   ITMVGGLLVSQVLTLFTTPVIYLGFDSLAKRMR--------KRFGKEKHPGHP 105
            ITMVGGLLVSQVLTLFTTPVIYL FDSL  R+R        +R G ++    P
Sbjct: 989  ITMVGGLLVSQVLTLFTTPVIYLAFDSLGHRLRDWRERRAARRTGADQSGSQP 1041


>ref|YP_001858000.1| acriflavin resistance protein [Burkholderia phymatum STM815]
 gb|ACC70954.1| acriflavin resistance protein [Burkholderia phymatum STM815]
          Length = 1045

 Score =  175 bits (444), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 86/113 (76%), Positives = 96/113 (84%), Gaps = 3/113 (2%)

Query: 1    MIDFALEAERHEGKSPRDAIYQACLLRFRPILMTTMAALLGALPLMLGTGVGSELRQPLG 60
            MIDFALEAER  GK PR+AIYQACLLRFRPILMTTMAALLGALPLMLGTG GSELR+PLG
Sbjct: 931  MIDFALEAEREHGKPPREAIYQACLLRFRPILMTTMAALLGALPLMLGTGAGSELRRPLG 990

Query: 61   ITMVGGLLVSQVLTLFTTPVIYLGFDSLAKRMRKRFGKEKH---PGHPDDDDA 110
            I + GGL+VSQ+LTLFTTPVIYLGFDS+A+R+R RF ++ H   P  P   DA
Sbjct: 991  IAIAGGLIVSQLLTLFTTPVIYLGFDSIARRLRARFHRDGHRDGPARPPATDA 1043


>ref|YP_001892709.1| acriflavin resistance protein [Ralstonia pickettii 12J]
 ref|YP_002984210.1| acriflavin resistance protein [Ralstonia pickettii 12D]
 gb|ACD29282.1| acriflavin resistance protein [Ralstonia pickettii 12J]
 gb|ACS65538.1| acriflavin resistance protein [Ralstonia pickettii 12D]
          Length = 1044

 Score =  174 bits (442), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 85/93 (91%), Positives = 88/93 (94%)

Query: 1    MIDFALEAERHEGKSPRDAIYQACLLRFRPILMTTMAALLGALPLMLGTGVGSELRQPLG 60
            MIDFALEAER +G +PRDAIYQACLLRFRPILMTTMAALLGALPLMLGTGVGSELRQPLG
Sbjct: 929  MIDFALEAEREQGMAPRDAIYQACLLRFRPILMTTMAALLGALPLMLGTGVGSELRQPLG 988

Query: 61   ITMVGGLLVSQVLTLFTTPVIYLGFDSLAKRMR 93
            ITMVGGLLVSQVLTLFTTPVIYL FDSL  R+R
Sbjct: 989  ITMVGGLLVSQVLTLFTTPVIYLAFDSLGGRLR 1021