BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0144.p         (111 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004751838.1| transmembrane drug efflux pump [Collimonas f...   137   7e-31
ref|YP_003774945.1| cation/multidrug efflux pump protein [Herbas...   135   2e-30
ref|YP_001353372.1| AcrB/AcrD/AcrF family membrane protein [Jant...   125   3e-27
ref|YP_582667.1| multidrug efflux system, subunit C [Cupriavidus...   123   7e-27
ref|YP_004235587.1| acriflavin resistance protein [Acidovorax av...   122   2e-26

>ref|YP_004751838.1| transmembrane drug efflux pump [Collimonas fungivorans Ter331]
 gb|AEK61015.1| Transmembrane drug efflux pump [Collimonas fungivorans Ter331]
          Length = 1072

 Score =  137 bits (344), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 66/76 (86%), Positives = 74/76 (97%)

Query: 1  MNISRPFIERPIATTLLTIGIALAGMLAFKLLPVSPLPQVDYPTISVSASMPGASPETMA 60
          MNISRPFI+RPIATTLLTIGIALAGM+AF+LLPVSPLPQVD+PTIS+SAS+PGASPETMA
Sbjct: 1  MNISRPFIQRPIATTLLTIGIALAGMVAFRLLPVSPLPQVDFPTISISASLPGASPETMA 60

Query: 61 ATIATPLERASGTAAG 76
          AT+ATPLERA G+ AG
Sbjct: 61 ATVATPLERALGSIAG 76


>ref|YP_003774945.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae
          SmR1]
 gb|ADJ63037.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae
          SmR1]
          Length = 1078

 Score =  135 bits (340), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/96 (70%), Positives = 78/96 (81%)

Query: 1  MNISRPFIERPIATTLLTIGIALAGMLAFKLLPVSPLPQVDYPTISVSASMPGASPETMA 60
          MNIS PFI+RPIATTLLTIGIALAG++AF+LLPVSPLPQVDYPTIS+SASMPGASPETMA
Sbjct: 1  MNISLPFIQRPIATTLLTIGIALAGIVAFRLLPVSPLPQVDYPTISISASMPGASPETMA 60

Query: 61 ATIATPLERASGTAAGSGAARRCACATSPRSRIRWP 96
          AT+ATPLERA G  AG       +   S R  +++ 
Sbjct: 61 ATVATPLERAMGAIAGVTEMTSTSSQNSTRITLQFD 96


>ref|YP_001353372.1| AcrB/AcrD/AcrF family membrane protein [Janthinobacterium sp.
          Marseille]
 gb|ABR89554.1| AcrB/AcrD/AcrF family membrane protein [Janthinobacterium sp.
          Marseille]
          Length = 1029

 Score =  125 bits (313), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/76 (78%), Positives = 69/76 (90%)

Query: 1  MNISRPFIERPIATTLLTIGIALAGMLAFKLLPVSPLPQVDYPTISVSASMPGASPETMA 60
          MNIS PFI RP+ATTL+TIGIALAG+L F LLP++PLPQVD+PTISVSAS+PGASP+TMA
Sbjct: 1  MNISAPFIARPVATTLITIGIALAGILGFNLLPIAPLPQVDFPTISVSASLPGASPDTMA 60

Query: 61 ATIATPLERASGTAAG 76
          AT+ATPLERA G  AG
Sbjct: 61 ATVATPLERALGAIAG 76


>ref|YP_582667.1| multidrug efflux system, subunit C [Cupriavidus metallidurans
          CH34]
 gb|ABF07398.1| multidrug efflux system, subunit C [Cupriavidus metallidurans
          CH34]
          Length = 1100

 Score =  123 bits (309), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 61/76 (80%), Positives = 68/76 (89%)

Query: 1  MNISRPFIERPIATTLLTIGIALAGMLAFKLLPVSPLPQVDYPTISVSASMPGASPETMA 60
          MN+S  FI RP+AT LLTIGI LAG+ AF+LLPVSPLPQVD+PTISVSAS+PGASPETMA
Sbjct: 1  MNLSATFIHRPVATALLTIGILLAGIAAFRLLPVSPLPQVDFPTISVSASLPGASPETMA 60

Query: 61 ATIATPLERASGTAAG 76
          AT+ATPLERA GT AG
Sbjct: 61 ATVATPLERALGTIAG 76


>ref|YP_004235587.1| acriflavin resistance protein [Acidovorax avenae subsp. avenae
          ATCC 19860]
 gb|ADX47020.1| acriflavin resistance protein [Acidovorax avenae subsp. avenae
          ATCC 19860]
          Length = 1070

 Score =  122 bits (306), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/76 (77%), Positives = 67/76 (88%)

Query: 1  MNISRPFIERPIATTLLTIGIALAGMLAFKLLPVSPLPQVDYPTISVSASMPGASPETMA 60
          MN+SRPF+ERP+AT LLTIGIALAG+ AF LLPV+PLPQVDYP ISVSAS+PGASPETMA
Sbjct: 1  MNLSRPFVERPVATVLLTIGIALAGIAAFFLLPVAPLPQVDYPAISVSASLPGASPETMA 60

Query: 61 ATIATPLERASGTAAG 76
           ++ATPLER  G  AG
Sbjct: 61 TSVATPLERRLGVIAG 76