BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0140.p (538 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004751838.1| transmembrane drug efflux pump [Collimonas f... 480 e-133 ref|YP_003774945.1| cation/multidrug efflux pump protein [Herbas... 472 e-131 ref|YP_002230227.1| multidrug resistance protein MdtC [Burkholde... 311 2e-82 ref|YP_368545.1| acriflavin resistance protein [Burkholderia sp.... 310 4e-82 ref|YP_001764467.1| acriflavin resistance protein [Burkholderia ... 310 4e-82 >ref|YP_004751838.1| transmembrane drug efflux pump [Collimonas fungivorans Ter331] gb|AEK61015.1| Transmembrane drug efflux pump [Collimonas fungivorans Ter331] Length = 1072 Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust. Identities = 235/291 (80%), Positives = 262/291 (90%) Query: 1 VAGASLFLQAVQDIRVGARQSDSQYEYTLQSDDLELLRTWEPKIRVAFSNLPQLEDVSTD 60 +AGA+LF+Q+VQDIRVG R SD QY+YTLQSDDL LRTWEPKIR AFS LPQL DVSTD Sbjct: 638 IAGANLFMQSVQDIRVGGRSSDGQYQYTLQSDDLNELRTWEPKIREAFSALPQLADVSTD 697 Query: 61 QQDKGLQTTLTIDRETAIRSGVTPQLIDTSLSDLFGQRQISTIYSGMNQYHVVMEAAPQY 120 QQDKGLQTTLTIDRETAIRSGVTPQLID++L+DLFGQRQ+STIYSGMNQYHVVMEAAPQY Sbjct: 698 QQDKGLQTTLTIDRETAIRSGVTPQLIDSTLNDLFGQRQVSTIYSGMNQYHVVMEAAPQY 757 Query: 121 WQSPEILNSTYVSLANSTANLSPTTSALGTPPALTAGGKLNSNSSLALTLSTAASKQVPL 180 WQSP++L+ TYVS+ +STANLSPTTSALGTPPALTAGGKL SNSSLALTLST A +Q+PL Sbjct: 758 WQSPQVLHDTYVSIPSSTANLSPTTSALGTPPALTAGGKLASNSSLALTLSTTAEQQMPL 817 Query: 181 TSFSSFAPTTTSLSVSHEGQFIASTISFNLAEGVSLSQATQVINDTLARLGVPTAVHGAF 240 +FSSF PT TSL V+H+ QFIASTISFNL G SLS AT IND +AR+GVPT+VHG+F Sbjct: 818 AAFSSFQPTNTSLGVNHQSQFIASTISFNLPVGGSLSDATLAINDAMARIGVPTSVHGSF 877 Query: 241 AGTANAFQSSLDSQPVLILTALLAVYIVLGILYESLVHPITIISTLPSAGV 291 G+AN FQSSL SQP+LILTALLAVYIVLG+LYES VHPITI+STLPSAGV Sbjct: 878 QGSANLFQSSLSSQPMLILTALLAVYIVLGVLYESYVHPITILSTLPSAGV 928 >ref|YP_003774945.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] gb|ADJ63037.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1078 Score = 472 bits (1215), Expect = e-131, Method: Compositional matrix adjust. Identities = 233/291 (80%), Positives = 261/291 (89%), Gaps = 1/291 (0%) Query: 1 VAGASLFLQAVQDIRVGARQSDSQYEYTLQSDDLELLRTWEPKIRVAFSNLPQLEDVSTD 60 VAGA +FL VQDIR+GARQSDSQYEY+L+SDD+ LLR WEPKIR+A SNL +LED+STD Sbjct: 648 VAGARVFLVPVQDIRIGARQSDSQYEYSLKSDDVGLLRIWEPKIRLALSNLKELEDISTD 707 Query: 61 QQDKGLQTTLTIDRETAIRSGVTPQLIDTSLSDLFGQRQISTIYSGMNQYHVVMEAAPQY 120 QQD GLQTTLTIDRETA+R+GVTPQLID++LSDLFGQRQISTIYSGMNQYHVVMEAAPQY Sbjct: 708 QQDNGLQTTLTIDRETAMRAGVTPQLIDSTLSDLFGQRQISTIYSGMNQYHVVMEAAPQY 767 Query: 121 WQSPEILNSTYVSLANSTANLSPTTSALGTPPALTAGGKLNSNSSLALTLSTAASKQVPL 180 WQSPE L TYVSLA S+ NLSPTTS+L TPPAL+A GKLN+N+ LA T+STA S+Q+PL Sbjct: 768 WQSPETLRDTYVSLAGSS-NLSPTTSSLSTPPALSASGKLNANTGLAQTISTAPSRQIPL 826 Query: 181 TSFSSFAPTTTSLSVSHEGQFIASTISFNLAEGVSLSQATQVINDTLARLGVPTAVHGAF 240 +FS F PTTTSLSVSHEGQF+AST+SFNLAEGVSLSQAT I+ +A+LGVPT V G F Sbjct: 827 AAFSRFEPTTTSLSVSHEGQFVASTLSFNLAEGVSLSQATAAIDRAMAQLGVPTNVLGTF 886 Query: 241 AGTANAFQSSLDSQPVLILTALLAVYIVLGILYESLVHPITIISTLPSAGV 291 AGTANAFQSS SQP+LILTALLAVYIVLGILYESL+HPITIISTLPSAGV Sbjct: 887 AGTANAFQSSTSSQPLLILTALLAVYIVLGILYESLIHPITIISTLPSAGV 937 >ref|YP_002230227.1| multidrug resistance protein MdtC [Burkholderia cenocepacia J2315] emb|CAR51382.1| multidrug resistance protein MdtC [Burkholderia cenocepacia J2315] Length = 1102 Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 169/320 (52%), Positives = 217/320 (67%), Gaps = 29/320 (9%) Query: 1 VAGASLFLQAVQDIRVGARQSDSQYEYTLQSDDLELLRTWEPKIRVAFSNLPQLEDVSTD 60 VAGAS FLQA QDIRVG RQS++QY++TL D L W P + A P+L DV++D Sbjct: 639 VAGASTFLQAAQDIRVGGRQSNAQYQFTLLGDSTADLYKWGPLLTEALQKRPELTDVNSD 698 Query: 61 QQDKGLQTTLTIDRETAIRSGVTPQLIDTSLSDLFGQRQISTIYSGMNQYHVVMEAAPQY 120 QQ G++ +TIDR TA R G+ P ID +L D FGQRQ+STIY+ +NQYHVVME AP+Y Sbjct: 699 QQQGGMEAMVTIDRATAARFGIKPAQIDNTLYDAFGQRQVSTIYNPLNQYHVVMEVAPKY 758 Query: 121 WQSPEILNSTYVSLANSTANLSPTTS-ALGTPPALTAGGKLNS---------------NS 164 WQSPE+LN ++S + +AN S TT+ A GT A +AG N Sbjct: 759 WQSPEMLNQVWISTSGGSANGSQTTNAAAGTFVATSAGTSSAGTAAQSAAAIASDSARNQ 818 Query: 165 SL-------------ALTLSTAASKQVPLTSFSSFAPTTTSLSVSHEGQFIASTISFNLA 211 +L ++ST+ S +PL++ ++F P+TT LSV+H+G F+A+TISFNL Sbjct: 819 ALNSIAASGKSSASSGASVSTSKSTMIPLSAIATFGPSTTPLSVNHQGLFVATTISFNLP 878 Query: 212 EGVSLSQATQVINDTLARLGVPTAVHGAFAGTANAFQSSLDSQPVLILTALLAVYIVLGI 271 GVSLSQATQVI T+A++GVP + G+F GTA AFQ S++ QP+LIL ALLAVYIVLGI Sbjct: 879 PGVSLSQATQVIYQTMAQVGVPPTIVGSFQGTAQAFQQSMNDQPILILAALLAVYIVLGI 938 Query: 272 LYESLVHPITIISTLPSAGV 291 LYES +HPITI+STLPSAGV Sbjct: 939 LYESYIHPITILSTLPSAGV 958 >ref|YP_368545.1| acriflavin resistance protein [Burkholderia sp. 383] gb|ABB07901.1| Acriflavin resistance protein [Burkholderia sp. 383] Length = 1102 Score = 310 bits (795), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 169/320 (52%), Positives = 217/320 (67%), Gaps = 29/320 (9%) Query: 1 VAGASLFLQAVQDIRVGARQSDSQYEYTLQSDDLELLRTWEPKIRVAFSNLPQLEDVSTD 60 VAGA FLQA QDIRVG RQS++QY++TL D L W P + A P+L DV++D Sbjct: 639 VAGARTFLQAAQDIRVGGRQSNAQYQFTLLGDSSADLYKWGPILTEALQKRPELTDVNSD 698 Query: 61 QQDKGLQTTLTIDRETAIRSGVTPQLIDTSLSDLFGQRQISTIYSGMNQYHVVMEAAPQY 120 QQ GL+ +TIDR TA R G+ P ID +L D FGQRQ+STIY+ +NQYHVVME AP+Y Sbjct: 699 QQQGGLEAMVTIDRATAARFGIKPAQIDNTLYDAFGQRQVSTIYNPLNQYHVVMEVAPKY 758 Query: 121 WQSPEILNSTYVSLANSTANLSPTTS-ALGTPPALTAGGK-------------------- 159 WQSPE+LN +VS + +AN S TT+ A GT A +AG Sbjct: 759 WQSPEMLNQVWVSTSGGSANGSQTTNAAAGTYVATSAGTSSAGTATQSAAAIASDSARNQ 818 Query: 160 -LNSNSSLALTLSTAA-------SKQVPLTSFSSFAPTTTSLSVSHEGQFIASTISFNLA 211 LNS ++ + +++ S +PL++ ++F P+TT LSV+H+G F+A+TISFNL Sbjct: 819 ALNSIAASGKSSASSGASVSTSKSTMIPLSAIATFGPSTTPLSVNHQGLFVATTISFNLP 878 Query: 212 EGVSLSQATQVINDTLARLGVPTAVHGAFAGTANAFQSSLDSQPVLILTALLAVYIVLGI 271 GVSLSQATQVI T+A++GVP + G+F GTA AFQ S++ QP+LIL ALLAVYIVLGI Sbjct: 879 PGVSLSQATQVIYQTMAQVGVPPTIVGSFQGTAQAFQQSMNDQPILILAALLAVYIVLGI 938 Query: 272 LYESLVHPITIISTLPSAGV 291 LYES +HPITI+STLPSAGV Sbjct: 939 LYESYIHPITILSTLPSAGV 958 >ref|YP_001764467.1| acriflavin resistance protein [Burkholderia cenocepacia MC0-3] gb|ACA90345.1| acriflavin resistance protein [Burkholderia cenocepacia MC0-3] Length = 1102 Score = 310 bits (795), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 169/320 (52%), Positives = 216/320 (67%), Gaps = 29/320 (9%) Query: 1 VAGASLFLQAVQDIRVGARQSDSQYEYTLQSDDLELLRTWEPKIRVAFSNLPQLEDVSTD 60 VAGA FLQA QDIRVG RQS++QY++TL D L W P + A P+L DV++D Sbjct: 639 VAGARTFLQAAQDIRVGGRQSNAQYQFTLLGDSSADLYKWGPILTEALQKRPELTDVNSD 698 Query: 61 QQDKGLQTTLTIDRETAIRSGVTPQLIDTSLSDLFGQRQISTIYSGMNQYHVVMEAAPQY 120 QQ GL+ +TIDR TA R G+ P ID +L D FGQRQ+STIY+ +NQYHVVME AP+Y Sbjct: 699 QQQGGLEAMVTIDRATAARFGIKPAQIDNTLYDAFGQRQVSTIYNPLNQYHVVMEVAPKY 758 Query: 121 WQSPEILNSTYVSLANSTANLSPTTS-ALGTPPALTAGGKLNS---------------NS 164 WQSPE+LN ++S + +AN S TT+ A GT A +AG N Sbjct: 759 WQSPEMLNQVWISTSGGSANGSQTTNAAAGTFVATSAGTSSAGTAAQSAAAIASDSARNQ 818 Query: 165 SL-------------ALTLSTAASKQVPLTSFSSFAPTTTSLSVSHEGQFIASTISFNLA 211 +L ++ST+ S +PL++ ++F P+TT LSV+H+G F+A+TISFNL Sbjct: 819 ALNSIAASGKSSASSGASVSTSKSTMIPLSAIATFGPSTTPLSVNHQGLFVATTISFNLP 878 Query: 212 EGVSLSQATQVINDTLARLGVPTAVHGAFAGTANAFQSSLDSQPVLILTALLAVYIVLGI 271 GVSLSQATQVI T+A++GVP + G+F GTA AFQ S++ QP+LIL ALLAVYIVLGI Sbjct: 879 PGVSLSQATQVIYQTMAQIGVPPTIVGSFQGTAQAFQQSMNDQPILILAALLAVYIVLGI 938 Query: 272 LYESLVHPITIISTLPSAGV 291 LYES +HPITI+STLPSAGV Sbjct: 939 LYESYIHPITILSTLPSAGV 958