BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0123.p         (158 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_158582.1| beta-ketoadipyl CoA thiolase [Aromatoleum aroma...   270   5e-71
ref|YP_160280.1| beta-ketoadipyl CoA thiolase [Aromatoleum aroma...   270   5e-71
ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase [Herbaspirillum ser...   267   4e-70
ref|YP_931814.1| beta-ketoadipyl CoA thiolase [Azoarcus sp. BH72...   264   4e-69
ref|YP_001897101.1| beta-ketoadipyl CoA thiolase [Burkholderia p...   263   5e-69

>ref|YP_158582.1| beta-ketoadipyl CoA thiolase [Aromatoleum aromaticum EbN1]
 emb|CAI07681.1| 3-ketoadipyl-CoA thiolase [Aromatoleum aromaticum EbN1]
          Length = 402

 Score =  270 bits (690), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 124/149 (83%), Positives = 142/149 (95%)

Query: 4   FICDAIRTPFGRFGGALSGVRADDLAALPIRALIERNPGVDWTKVDDIIYGCANQAGEDN 63
           +ICDAIRTPFGR+GG LSGVRADDLAALPI+AL+ERNPGVDW  VDD++YGCANQAGEDN
Sbjct: 6   YICDAIRTPFGRYGGTLSGVRADDLAALPIKALVERNPGVDWQAVDDVLYGCANQAGEDN 65

Query: 64  RNVARMAGLLAGLPVEVPGTTLNRLCGSSMDAVGTAARAIKAGECDLVIAGGVESMTRAP 123
           RNVARMA LLAGLPVEVPG+T+NRLCGSS+DA+G AARAI++GE +L+IAGGVESM+RAP
Sbjct: 66  RNVARMAALLAGLPVEVPGSTINRLCGSSLDAIGMAARAIRSGETELMIAGGVESMSRAP 125

Query: 124 FVMAKAESAFSRSAKIEDTTIGWRFINPL 152
           FV+ KA+SAFSRSAKIEDTTIGWRF+NPL
Sbjct: 126 FVLGKADSAFSRSAKIEDTTIGWRFVNPL 154


>ref|YP_160280.1| beta-ketoadipyl CoA thiolase [Aromatoleum aromaticum EbN1]
 emb|CAI09379.1| putative 3-ketoadipyl-CoA thiolase [Aromatoleum aromaticum EbN1]
          Length = 401

 Score =  270 bits (690), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 127/150 (84%), Positives = 140/150 (93%)

Query: 3   AFICDAIRTPFGRFGGALSGVRADDLAALPIRALIERNPGVDWTKVDDIIYGCANQAGED 62
           A+ICDAIRTPFGR+GG LS VRADDLAALPIRAL+ERNP VDW  VDD+IYGCANQAGED
Sbjct: 4   AYICDAIRTPFGRYGGTLSSVRADDLAALPIRALVERNPDVDWAAVDDVIYGCANQAGED 63

Query: 63  NRNVARMAGLLAGLPVEVPGTTLNRLCGSSMDAVGTAARAIKAGECDLVIAGGVESMTRA 122
           NRNVARMA LLAGLP +VPGTT+NRLCGSS+DAVG AARAIK+GE DL+IAGGVESM+RA
Sbjct: 64  NRNVARMAALLAGLPQDVPGTTVNRLCGSSLDAVGMAARAIKSGEADLMIAGGVESMSRA 123

Query: 123 PFVMAKAESAFSRSAKIEDTTIGWRFINPL 152
           PFVM KA++AFSRSAKIEDTTIGWRF+NPL
Sbjct: 124 PFVMGKADTAFSRSAKIEDTTIGWRFVNPL 153


>ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase [Herbaspirillum seropedicae SmR1]
 gb|ADJ65605.1| 3-oxoadipyl-CoA thiolase protein [Herbaspirillum seropedicae SmR1]
          Length = 401

 Score =  267 bits (683), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 126/152 (82%), Positives = 141/152 (92%)

Query: 1   MEAFICDAIRTPFGRFGGALSGVRADDLAALPIRALIERNPGVDWTKVDDIIYGCANQAG 60
           MEA ICDAIRTPFGR+GGAL  VRADDLAA PIR+L+ERNPGVDW++V+DI+YGCANQAG
Sbjct: 1   MEALICDAIRTPFGRYGGALGAVRADDLAAAPIRSLMERNPGVDWSRVEDILYGCANQAG 60

Query: 61  EDNRNVARMAGLLAGLPVEVPGTTLNRLCGSSMDAVGTAARAIKAGECDLVIAGGVESMT 120
           EDNRNVARMAGLLAGLP+ VPG+T+NRLCGSS+DAVG AARAIK+GE  L+IAGGVESMT
Sbjct: 61  EDNRNVARMAGLLAGLPIAVPGSTVNRLCGSSLDAVGMAARAIKSGEVQLMIAGGVESMT 120

Query: 121 RAPFVMAKAESAFSRSAKIEDTTIGWRFINPL 152
           RAPFVM KAESAF+RSA I DTTIGWRF+NPL
Sbjct: 121 RAPFVMGKAESAFARSAAIFDTTIGWRFVNPL 152


>ref|YP_931814.1| beta-ketoadipyl CoA thiolase [Azoarcus sp. BH72]
 emb|CAL92927.1| probable beta-ketoadipyl CoA thiolase [Azoarcus sp. BH72]
          Length = 400

 Score =  264 bits (674), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 124/151 (82%), Positives = 137/151 (90%)

Query: 2   EAFICDAIRTPFGRFGGALSGVRADDLAALPIRALIERNPGVDWTKVDDIIYGCANQAGE 61
           E FICD IRTP GR+GGALSGVR DDLAALPI+ALI RN GVDW  VDDI YGCANQAGE
Sbjct: 3   EVFICDGIRTPIGRYGGALSGVRTDDLAALPIKALIARNSGVDWAAVDDIYYGCANQAGE 62

Query: 62  DNRNVARMAGLLAGLPVEVPGTTLNRLCGSSMDAVGTAARAIKAGECDLVIAGGVESMTR 121
           DNR+VARMAGLLAGLP++VPG+T+NRLCGS MDAVGTAARAI+ GE  L+IAGGVESM+R
Sbjct: 63  DNRDVARMAGLLAGLPIDVPGSTINRLCGSGMDAVGTAARAIRTGETQLMIAGGVESMSR 122

Query: 122 APFVMAKAESAFSRSAKIEDTTIGWRFINPL 152
           APFVM KA++AFSRSAKIEDTTIGWRF+NPL
Sbjct: 123 APFVMGKADTAFSRSAKIEDTTIGWRFVNPL 153


>ref|YP_001897101.1| beta-ketoadipyl CoA thiolase [Burkholderia phytofirmans PsJN]
 gb|ACD17877.1| beta-ketoadipyl CoA thiolase [Burkholderia phytofirmans PsJN]
          Length = 400

 Score =  263 bits (673), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 126/154 (81%), Positives = 136/154 (88%)

Query: 2   EAFICDAIRTPFGRFGGALSGVRADDLAALPIRALIERNPGVDWTKVDDIIYGCANQAGE 61
           +AFICDAIRTP GR+GGAL  VRADDL A+PI+ALIERNPGVDW  VDD+IYGCANQAGE
Sbjct: 3   DAFICDAIRTPIGRYGGALKDVRADDLGAVPIKALIERNPGVDWRTVDDVIYGCANQAGE 62

Query: 62  DNRNVARMAGLLAGLPVEVPGTTLNRLCGSSMDAVGTAARAIKAGECDLVIAGGVESMTR 121
           DNRNVARM+ LLAGLPVE PG+T+NRLCGS MDAVGTAARAIKAGE  L+IAGGVESMTR
Sbjct: 63  DNRNVARMSALLAGLPVEAPGSTINRLCGSGMDAVGTAARAIKAGEARLMIAGGVESMTR 122

Query: 122 APFVMAKAESAFSRSAKIEDTTIGWRFINPLXAR 155
           APFVM KA SAF+R A I DTTIGWRFINPL  R
Sbjct: 123 APFVMGKATSAFARQADIYDTTIGWRFINPLMKR 156