BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0116.p (291 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002008253.1| aldehyde deshydrogenase, phenylacetic acid d... 435 e-120 ref|YP_004681512.1| phenylacetic acid degradation protein PaaK [... 422 e-116 ref|YP_840877.1| phenylacetic acid degradation protein K,phenyla... 416 e-114 ref|YP_297942.1| phenylacetic acid degradation protein paaN2 [Ra... 416 e-114 ref|YP_785907.1| phenylacetic acid degradation aldehyde dehydrog... 406 e-111 >ref|YP_002008253.1| aldehyde deshydrogenase, phenylacetic acid degradation [Cupriavidus taiwanensis LMG 19424] emb|CAQ72199.1| aldehyde deshydrogenase, Phenylacetic acid degradation [Cupriavidus taiwanensis LMG 19424] Length = 554 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 212/293 (72%), Positives = 247/293 (84%), Gaps = 2/293 (0%) Query: 1 LVAHEAGDKVATELALRPEIKLIDFTGSSANGNWLERNAVQAQVFTEKSGVNQIVIDSTA 60 LVA++ +++A++LALRPE++LIDFTGS+ANG+WLERNA QAQV+TEK+GVNQIVIDSTA Sbjct: 262 LVANDPSERMASKLALRPEVRLIDFTGSTANGDWLERNAHQAQVYTEKAGVNQIVIDSTA 321 Query: 61 DFKGMARNIAFSLVLYSGQMCTTPQNIYIPKDGIATAEGHVSFDAVVAAIGEAISKLTGD 120 DFKGM RNIAFSL LYSGQMCT PQNIY+PKDGI T EG VSFD V AAIGEA+ KLTGD Sbjct: 322 DFKGMVRNIAFSLSLYSGQMCTAPQNIYVPKDGIDTPEGRVSFDQVAAAIGEAVGKLTGD 381 Query: 121 PVKAVELLGAIQNTAVLDRIEAARKMGEVVLDSMPLQHPQFPEARIRTPLLVKTAGGK-- 178 P KAVEL+GAIQN V++RIEA+R +GE+V DS L+HP+FP ARIRTPL++K Sbjct: 382 PAKAVELIGAIQNDGVVERIEASRALGEIVADSRVLEHPEFPGARIRTPLVLKVDASNEA 441 Query: 179 AVTEEFFGPISFAVATDSTAESIRLAEQTVREHGALTLSAYTTDAAVKEALGDAAAEAGV 238 + +E FGPISF VATDSTA SI LA + + HGALTLSAYTTDA V E + DAA +AGV Sbjct: 442 KIMQELFGPISFVVATDSTAHSIELAHRGAKTHGALTLSAYTTDAGVTERIRDAAEDAGV 501 Query: 239 ALSLNLTGGVFVNQSAAFSDFHGTGANPAANAALADTAFVAGRFRVVQTREPV 291 ALSLNLTGGVFVNQSAAFSDFH TGANPAANA+L+D AFVA RFRVVQ+R P+ Sbjct: 502 ALSLNLTGGVFVNQSAAFSDFHATGANPAANASLSDAAFVANRFRVVQSRSPI 554 >ref|YP_004681512.1| phenylacetic acid degradation protein PaaK [Cupriavidus necator N-1] gb|AEI80280.1| phenylacetic acid degradation protein PaaK [Cupriavidus necator N-1] Length = 554 Score = 422 bits (1084), Expect = e-116, Method: Compositional matrix adjust. Identities = 209/291 (71%), Positives = 243/291 (83%), Gaps = 4/291 (1%) Query: 1 LVAHEAGDKVATELALRPEIKLIDFTGSSANGNWLERNAVQAQVFTEKSGVNQIVIDSTA 60 LVA++ +++A+ LALRPE++LIDFTGSSANG+WLERNA QAQV+TEK+GVNQIVIDST Sbjct: 262 LVANDPTERMASTLALRPEVRLIDFTGSSANGDWLERNAHQAQVYTEKAGVNQIVIDSTG 321 Query: 61 DFKGMARNIAFSLVLYSGQMCTTPQNIYIPKDGIATAEGHVSFDAVVAAIGEAISKLTGD 120 DFKGM RNIAFSL LYSGQMCT PQNIY+P DGI T EGH+SFD V AAIGE + +LT D Sbjct: 322 DFKGMVRNIAFSLALYSGQMCTAPQNIYVPTDGIDTPEGHLSFDQVAAAIGEGVVRLTSD 381 Query: 121 PVKAVELLGAIQNTAVLDRIEAARKMGEVVLDSMPLQHPQFPEARIRTPLLVKTAG---G 177 KAVELLGAIQN V+ RIE++R +GE+V DS L+HP+FP ARIRTPL++K G Sbjct: 382 AAKAVELLGAIQNDGVVQRIESSRALGEIVADSRVLEHPEFPGARIRTPLVLKVDASDEG 441 Query: 178 KAVTEEFFGPISFAVATDSTAESIRLAEQTVREHGALTLSAYTTDAAVKEALGDAAAEAG 237 K + +E FGPISF VATD+TA SI LA + +EHGALTLSAYTTDA V EA+ DAA +AG Sbjct: 442 K-IMQELFGPISFIVATDNTAHSIALAHRGAKEHGALTLSAYTTDAGVNEAIRDAAEDAG 500 Query: 238 VALSLNLTGGVFVNQSAAFSDFHGTGANPAANAALADTAFVAGRFRVVQTR 288 VALSLNLTGGVFVNQSAAFSDFH TGANPAANA+L+D AFVA RFRVVQ+R Sbjct: 501 VALSLNLTGGVFVNQSAAFSDFHATGANPAANASLSDAAFVANRFRVVQSR 551 >ref|YP_840877.1| phenylacetic acid degradation protein K,phenylacetaldehyde dehydrogenase [Ralstonia eutropha H16] emb|CAJ96147.1| phenylacetic acid degradation protein K,phenylacetaldehyde dehydrogenase [Ralstonia eutropha H16] Length = 554 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 204/290 (70%), Positives = 241/290 (83%), Gaps = 2/290 (0%) Query: 1 LVAHEAGDKVATELALRPEIKLIDFTGSSANGNWLERNAVQAQVFTEKSGVNQIVIDSTA 60 LVA++ +++A+ LALRPE++LIDFTGSSANGNWLERNA QAQV+TEK+GVNQIVI ST+ Sbjct: 262 LVANDPTERMASTLALRPEVRLIDFTGSSANGNWLERNAHQAQVYTEKAGVNQIVIHSTS 321 Query: 61 DFKGMARNIAFSLVLYSGQMCTTPQNIYIPKDGIATAEGHVSFDAVVAAIGEAISKLTGD 120 DFKGM RNIAFSL LYSGQMCT PQNIY+PK GI T EGH+SFD V AAIGE + +LT D Sbjct: 322 DFKGMVRNIAFSLALYSGQMCTAPQNIYVPKGGIDTPEGHLSFDQVAAAIGEGVVRLTSD 381 Query: 121 PVKAVELLGAIQNTAVLDRIEAARKMGEVVLDSMPLQHPQFPEARIRTPLLVKT--AGGK 178 KAVELLGAIQN V+ RIE++R +GE+V DS L+HP+FP ARIRTPL++K + Sbjct: 382 AAKAVELLGAIQNDGVVQRIESSRALGEIVADSRVLEHPEFPGARIRTPLVLKVDASDED 441 Query: 179 AVTEEFFGPISFAVATDSTAESIRLAEQTVREHGALTLSAYTTDAAVKEALGDAAAEAGV 238 + +E FGPISF VATD+TA SI LA + +EHGALTLSAYTTDA + E + +AA +AGV Sbjct: 442 KIMQELFGPISFIVATDNTAHSIALAHRGAKEHGALTLSAYTTDAGMAEGIREAAEDAGV 501 Query: 239 ALSLNLTGGVFVNQSAAFSDFHGTGANPAANAALADTAFVAGRFRVVQTR 288 ALSLNLTGGVFVNQSAAFSDFH TGANPAANA+L+D AFVA RFRVVQ+R Sbjct: 502 ALSLNLTGGVFVNQSAAFSDFHATGANPAANASLSDAAFVANRFRVVQSR 551 >ref|YP_297942.1| phenylacetic acid degradation protein paaN2 [Ralstonia eutropha JMP134] gb|AAZ63098.1| Phenylacetic acid degradation protein paaN2 [Ralstonia eutropha JMP134] Length = 554 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 203/294 (69%), Positives = 243/294 (82%), Gaps = 4/294 (1%) Query: 1 LVAHEAGDKVATELALRPEIKLIDFTGSSANGNWLERNAVQAQVFTEKSGVNQIVIDSTA 60 LVA++ +++A+ LALRPE++LIDFTGS+ANG+WLERNA QAQV+TEK+GVNQIVIDST+ Sbjct: 262 LVANDPTERMASTLALRPEVRLIDFTGSTANGDWLERNAHQAQVYTEKAGVNQIVIDSTS 321 Query: 61 DFKGMARNIAFSLVLYSGQMCTTPQNIYIPKDGIATAEGHVSFDAVVAAIGEAISKLTGD 120 DFKGM RNIAFSL LYSGQMCT PQNIY+PK GI T EGH+SFD V +AIGE + KLTGD Sbjct: 322 DFKGMVRNIAFSLALYSGQMCTAPQNIYVPKGGIDTPEGHLSFDQVASAIGEVVGKLTGD 381 Query: 121 PVKAVELLGAIQNTAVLDRIEAARKMGEVVLDSMPLQHPQFPEARIRTPLLVKTAG---G 177 KAVEL+GAIQN V+ RIEA+R +GE+V+DS LQHP+FP AR+ TPL++K G Sbjct: 382 AAKAVELIGAIQNDGVVQRIEASRSLGEIVIDSRALQHPEFPGARVHTPLVLKVDASDEG 441 Query: 178 KAVTEEFFGPISFAVATDSTAESIRLAEQTVREHGALTLSAYTTDAAVKEALGDAAAEAG 237 K + +E FGPISF VAT+ TA SI LA + +EHGALTLSAYTT+ V +A+ DAA EAG Sbjct: 442 K-IMQELFGPISFVVATEDTAHSIDLARRGAKEHGALTLSAYTTNDGVADAISDAAEEAG 500 Query: 238 VALSLNLTGGVFVNQSAAFSDFHGTGANPAANAALADTAFVAGRFRVVQTREPV 291 VALS NLTG VFVNQSAAFSDFH TGANPAANA+L+D AFVA RFRVVQ+R+ + Sbjct: 501 VALSFNLTGAVFVNQSAAFSDFHATGANPAANASLSDAAFVANRFRVVQSRKHI 554 >ref|YP_785907.1| phenylacetic acid degradation aldehyde dehydrogenase [Bordetella avium 197N] emb|CAJ48994.1| putative phenylacetic acid degradation aldehyde dehydrogenase [Bordetella avium 197N] Length = 554 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 203/293 (69%), Positives = 237/293 (80%), Gaps = 2/293 (0%) Query: 1 LVAHEAGDKVATELALRPEIKLIDFTGSSANGNWLERNAVQAQVFTEKSGVNQIVIDSTA 60 L AHEAGD A +LAL P +KLIDFTGSSANGNWLE+NA QAQV+TEK+GVNQ++IDS A Sbjct: 262 LAAHEAGDDTAQQLALNPAVKLIDFTGSSANGNWLEQNARQAQVYTEKAGVNQVIIDSAA 321 Query: 61 DFKGMARNIAFSLVLYSGQMCTTPQNIYIPKDGIATAEGHVSFDAVVAAIGEAISKLTGD 120 D KG+ARN+AFSL LYSGQMCT PQNIY+P+DGI TAEG +SFD V AAI A+ KL+GD Sbjct: 322 DIKGVARNLAFSLALYSGQMCTAPQNIYVPRDGIDTAEGRLSFDEVAAAIASAVEKLSGD 381 Query: 121 PVKAVELLGAIQNTAVLDRIEAARKMGEVVL-DSMPLQHPQFPEARIRTPLLVKTAGGKA 179 +AVEL GAIQN A RI+AAR +G VL DS L+HPQF +AR+RTPL+++ A Sbjct: 382 AARAVELTGAIQNEATAQRIDAARALGLPVLADSRVLEHPQFAQARVRTPLVLRADADDA 441 Query: 180 -VTEEFFGPISFAVATDSTAESIRLAEQTVREHGALTLSAYTTDAAVKEALGDAAAEAGV 238 + +E+FGPISF VATDSTA S++LA T R HGAL+LSAYTTD V + DAA +AGV Sbjct: 442 RIFQEWFGPISFVVATDSTAHSVKLARDTARAHGALSLSAYTTDDDVAAQVQDAAEQAGV 501 Query: 239 ALSLNLTGGVFVNQSAAFSDFHGTGANPAANAALADTAFVAGRFRVVQTREPV 291 ALSLNLTG VFVNQ+AAFSDFHGTGANPAANAAL+D+AFVA RFRVVQTR V Sbjct: 502 ALSLNLTGAVFVNQTAAFSDFHGTGANPAANAALSDSAFVANRFRVVQTRRHV 554