BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0113.p (185 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777506.1| phenylacetic acid degradation protein [Herba... 239 2e-61 ref|YP_840879.1| phenylacetic acid degradation protein D [Ralsto... 233 1e-59 ref|YP_004681514.1| phenylacetic acid degradation protein PaaD [... 231 3e-59 ref|YP_297940.1| phenylacetate-CoA oxygenase subunit PaaJ [Ralst... 229 1e-58 ref|YP_002008255.1| subunit of multicomponent oxygenase, phenyla... 227 7e-58 >ref|YP_003777506.1| phenylacetic acid degradation protein [Herbaspirillum seropedicae SmR1] gb|ADJ65598.1| phenylacetic acid degradation protein [Herbaspirillum seropedicae SmR1] Length = 181 Score = 239 bits (609), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 113/175 (64%), Positives = 135/175 (77%), Gaps = 6/175 (3%) Query: 11 EQLQEQIWSWLHLVPDPEIPVISVVDLGIVRDVQVSTSTGTSANDEQEVQCTIVITPTYS 70 + L+ +IW WL VPDPEIPV+SVVDLGIVR+V++ + A +CT+VITPTYS Sbjct: 13 DALKARIWDWLEAVPDPEIPVLSVVDLGIVREVEIEAAGAVDA------RCTVVITPTYS 66 Query: 71 GCPAMQVISQEIVAVLAQHGVAGVAIQTRLSPAWSTDWMSEHGKSQLKGYGIAPPAQQVI 130 GCPAM VI+++I VL + G+A VAI+ +L+PAWSTDWMSE G+ L+ YGIAPPAQQVI Sbjct: 67 GCPAMGVIAEDITTVLQEKGLAQVAIRIQLAPAWSTDWMSEKGRHNLRQYGIAPPAQQVI 126 Query: 131 DISGISRKRLQAPKVACPHCGSMHTVVVSQFGSTSCKSLYQCKDCLEPFDYFKAH 185 DI GI K A +V CPHCGS TV VSQFGSTSCK+LYQCKDC EPFDYFKAH Sbjct: 127 DIRGIQLKHHAAAQVDCPHCGSSRTVCVSQFGSTSCKALYQCKDCREPFDYFKAH 181 >ref|YP_840879.1| phenylacetic acid degradation protein D [Ralstonia eutropha H16] emb|CAJ96149.1| phenylacetic acid degradation protein D [Ralstonia eutropha H16] Length = 171 Score = 233 bits (593), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 111/170 (65%), Positives = 129/170 (75%), Gaps = 11/170 (6%) Query: 16 QIWSWLHLVPDPEIPVISVVDLGIVRDVQVSTSTGTSANDEQEVQCTIVITPTYSGCPAM 75 Q+W+WL VPDPEIPVISVVDLGIVRDV ++ C + ITPTYSGCPAM Sbjct: 13 QVWTWLDTVPDPEIPVISVVDLGIVRDVA-----------WEDDACVVTITPTYSGCPAM 61 Query: 76 QVISQEIVAVLAQHGVAGVAIQTRLSPAWSTDWMSEHGKSQLKGYGIAPPAQQVIDISGI 135 VI +EI LA G+A V ++T+L+PAW+TDWM+ GK+ L GYGIAPPAQQVIDISGI Sbjct: 62 TVIREEIERTLAAQGIASVRVRTQLAPAWTTDWMTPRGKASLGGYGIAPPAQQVIDISGI 121 Query: 136 SRKRLQAPKVACPHCGSMHTVVVSQFGSTSCKSLYQCKDCLEPFDYFKAH 185 SRK A VACPHCGS HT +VSQFGST+CK+LY+C DC EPFDYFKAH Sbjct: 122 SRKAAPALVVACPHCGSRHTRLVSQFGSTACKALYRCSDCKEPFDYFKAH 171 >ref|YP_004681514.1| phenylacetic acid degradation protein PaaD [Cupriavidus necator N-1] gb|AEI80282.1| phenylacetic acid degradation protein PaaD [Cupriavidus necator N-1] Length = 171 Score = 231 bits (589), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 111/170 (65%), Positives = 129/170 (75%), Gaps = 11/170 (6%) Query: 16 QIWSWLHLVPDPEIPVISVVDLGIVRDVQVSTSTGTSANDEQEVQCTIVITPTYSGCPAM 75 Q+W+WL VPDPEIPVISVVDLGIVRDV ++ C + ITPTYSGCPAM Sbjct: 13 QVWTWLDTVPDPEIPVISVVDLGIVRDVA-----------WEDDACIVTITPTYSGCPAM 61 Query: 76 QVISQEIVAVLAQHGVAGVAIQTRLSPAWSTDWMSEHGKSQLKGYGIAPPAQQVIDISGI 135 VI +EI LA G+A V ++T+L+PAW+TDWM+ GK+ L GYGIAPPAQQVIDISGI Sbjct: 62 TVIREEIERTLAAQGIASVRVRTQLAPAWTTDWMTPRGKASLGGYGIAPPAQQVIDISGI 121 Query: 136 SRKRLQAPKVACPHCGSMHTVVVSQFGSTSCKSLYQCKDCLEPFDYFKAH 185 SRK A VACPHCGS HT +VSQFGST+CK+LY+C DC EPFDYFKAH Sbjct: 122 SRKVAPALVVACPHCGSRHTRLVSQFGSTACKALYRCGDCKEPFDYFKAH 171 >ref|YP_297940.1| phenylacetate-CoA oxygenase subunit PaaJ [Ralstonia eutropha JMP134] gb|AAZ63096.1| Phenylacetate-CoA oxygenase, PaaJ subunit [Ralstonia eutropha JMP134] Length = 171 Score = 229 bits (585), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 112/170 (65%), Positives = 125/170 (73%), Gaps = 11/170 (6%) Query: 16 QIWSWLHLVPDPEIPVISVVDLGIVRDVQVSTSTGTSANDEQEVQCTIVITPTYSGCPAM 75 Q+W WL VPDPEIPVISVVDLGIVRDV C I ITPTYSGCPAM Sbjct: 13 QLWDWLEQVPDPEIPVISVVDLGIVRDVAWIDDA-----------CVITITPTYSGCPAM 61 Query: 76 QVISQEIVAVLAQHGVAGVAIQTRLSPAWSTDWMSEHGKSQLKGYGIAPPAQQVIDISGI 135 VI +I VL G+ +++QTRL+PAW+TDWMS GK+ L GYGIAPPAQQVIDISGI Sbjct: 62 TVIRDDIERVLGAQGIDRISVQTRLAPAWTTDWMSPRGKASLSGYGIAPPAQQVIDISGI 121 Query: 136 SRKRLQAPKVACPHCGSMHTVVVSQFGSTSCKSLYQCKDCLEPFDYFKAH 185 SRK A VACPHCGS HT +VSQFGST+CK+LY+C DC EPFDYFKAH Sbjct: 122 SRKASPALVVACPHCGSRHTRLVSQFGSTACKALYRCGDCKEPFDYFKAH 171 >ref|YP_002008255.1| subunit of multicomponent oxygenase, phenylacetic acid degradation; ring-hydroxylating complex protein 4 [Cupriavidus taiwanensis LMG 19424] emb|CAQ72201.1| subunit of multicomponent oxygenase, phenylacetic acid degradation; ring-hydroxylating complex protein 4 [Cupriavidus taiwanensis LMG 19424] Length = 174 Score = 227 bits (578), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 111/171 (64%), Positives = 126/171 (73%), Gaps = 11/171 (6%) Query: 15 EQIWSWLHLVPDPEIPVISVVDLGIVRDVQVSTSTGTSANDEQEVQCTIVITPTYSGCPA 74 EQ+W+WL V DPEIPVISVVDLGIVRDV C + ITPTYSGCPA Sbjct: 15 EQVWTWLDTVADPEIPVISVVDLGIVRDVAWEGDA-----------CVVTITPTYSGCPA 63 Query: 75 MQVISQEIVAVLAQHGVAGVAIQTRLSPAWSTDWMSEHGKSQLKGYGIAPPAQQVIDISG 134 M VI + I + LA GV V +QT+L+PAW+TDWM+ GK+ L GYGIAPPAQQVIDISG Sbjct: 64 MTVIREGIESALAAQGVDQVRVQTQLAPAWTTDWMTPRGKASLTGYGIAPPAQQVIDISG 123 Query: 135 ISRKRLQAPKVACPHCGSMHTVVVSQFGSTSCKSLYQCKDCLEPFDYFKAH 185 ISRK A VACPHCGS HT +VSQFGST+CK+LY+C DC EPFDYFKAH Sbjct: 124 ISRKTSPALVVACPHCGSRHTRLVSQFGSTACKALYRCGDCKEPFDYFKAH 174