BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0112.p (250 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777505.1| phenylacetic acid degradation protein [Herba... 390 e-106 ref|YP_297939.1| phenylacetate-CoA oxygenase subunit PaaI [Ralst... 362 4e-98 ref|YP_002008256.1| subunit of multicomponent oxygenase, phenyla... 358 4e-97 ref|YP_004681515.1| phenylacetic acid degradation protein PaaC [... 355 3e-96 ref|YP_840880.1| phenylacetic acid degradation protein C [Ralsto... 350 1e-94 >ref|YP_003777505.1| phenylacetic acid degradation protein [Herbaspirillum seropedicae SmR1] gb|ADJ65597.1| phenylacetic acid degradation protein [Herbaspirillum seropedicae SmR1] Length = 250 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 186/250 (74%), Positives = 208/250 (83%) Query: 1 MSDKATYVRRLGDNALILSQRLSEWCGKGPALEEDMALTNVALDLIGQARLWLSYAAELE 60 M+ K YVRRLGDN L+LSQRL+EWCGKGPALEEDMAL NV+LDLIGQARLWLSYAAELE Sbjct: 1 MTQKTDYVRRLGDNVLVLSQRLTEWCGKGPALEEDMALINVSLDLIGQARLWLSYAAELE 60 Query: 61 AAGRNEDQLAFLRDAHQFSNVLLVEQPNGNYADTLVRQFFFDAAHYFLLEALTTSTDPRI 120 GRNEDQLAFLRDAHQF N+LLVE PNG+YADTL RQF FD HYFLLE L S+D RI Sbjct: 61 GQGRNEDQLAFLRDAHQFHNLLLVELPNGSYADTLARQFLFDVWHYFLLEGLCQSSDARI 120 Query: 121 AGIAQKSIKEVTYHVRRSGDLIVRLGDGTELSHRMVQQAVDYLWPYTGELFSSDAADLAM 180 A IAQK KEVTYHVRRS DL++RLGDGTE SHR +Q A+D LW YTGELF +DA D AM Sbjct: 121 AEIAQKCFKEVTYHVRRSTDLMIRLGDGTEDSHRRMQAAIDALWMYTGELFVADALDQAM 180 Query: 181 QQEGVAPAPDAIRAQWLQHVQEILTEATLQTPPADAWMQSGGKQGKHTEHLGFLLAEMQF 240 Q++GVA A ++ +W QHV ++L EATL+ PPA WMQSGGK G+HTEHLG+LLAEMQF Sbjct: 181 QEQGVATALGEVQQKWTQHVTDVLLEATLKVPPAGLWMQSGGKAGRHTEHLGYLLAEMQF 240 Query: 241 LQRAYPGATW 250 LQRAYPGA W Sbjct: 241 LQRAYPGAQW 250 >ref|YP_297939.1| phenylacetate-CoA oxygenase subunit PaaI [Ralstonia eutropha JMP134] gb|AAZ63095.1| Phenylacetate-CoA oxygenase, PaaI subunit [Ralstonia eutropha JMP134] Length = 250 Score = 362 bits (928), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 174/247 (70%), Positives = 202/247 (81%), Gaps = 1/247 (0%) Query: 4 KATYVRRLGDNALILSQRLSEWCGKGPALEEDMALTNVALDLIGQARLWLSYAAELEAAG 63 K Y++RLGD L+L QRLSEWCG+GPALEED+ALTNVALDL+GQ RLWL YAAE+E G Sbjct: 5 KFEYLQRLGDTTLVLGQRLSEWCGRGPALEEDIALTNVALDLVGQTRLWLGYAAEVEGVG 64 Query: 64 RNEDQLAFLRDAHQFSNVLLVEQPNGNYADTLVRQFFFDAAHYFLLEALTTSTDPRIAGI 123 RN DQLA+LRDAHQF N+LLVEQPNG+YADTL RQF FD HYFLLE L STD RIA I Sbjct: 65 RNADQLAYLRDAHQFRNLLLVEQPNGSYADTLARQFLFDTWHYFLLERLQHSTDARIAEI 124 Query: 124 AQKSIKEVTYHVRRSGDLIVRLGDGTELSHRMVQQAVDYLWPYTGELFSSDAADLAMQQE 183 A KS+KEVTYHVRRSGDL+VRLGDGTE SHR +Q A D LW +TGELF SDAA++A+ + Sbjct: 125 AAKSLKEVTYHVRRSGDLVVRLGDGTEESHRRMQDAFDDLWMFTGELFESDAAEVALVAQ 184 Query: 184 GVAPAPDAIRAQWLQHVQEILTEATLQTPPADAWMQSGGKQGKHTEHLGFLLAEMQFLQR 243 GVA P ++ W +HV E+L EATL+ P + W Q+GG+QG+HTEHLG+LLAEMQFLQR Sbjct: 185 GVAVDPASLAESWQRHVGEVLEEATLRIPAGN-WSQTGGRQGRHTEHLGYLLAEMQFLQR 243 Query: 244 AYPGATW 250 AYPGA W Sbjct: 244 AYPGARW 250 >ref|YP_002008256.1| subunit of multicomponent oxygenase, phenylacetic acid degradation; ring-hydroxylating complex protein 3 [Cupriavidus taiwanensis LMG 19424] emb|CAQ72202.1| subunit of multicomponent oxygenase, phenylacetic acid degradation; ring-hydroxylating complex protein 3 [Cupriavidus taiwanensis LMG 19424] Length = 250 Score = 358 bits (920), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 175/249 (70%), Positives = 199/249 (79%), Gaps = 1/249 (0%) Query: 2 SDKATYVRRLGDNALILSQRLSEWCGKGPALEEDMALTNVALDLIGQARLWLSYAAELEA 61 + K Y+ RLGD+ L+L QRLSEWCG+GPALEED+ALTNVALDLIGQ RLWL YAAE+E Sbjct: 3 NHKLEYLLRLGDSTLVLGQRLSEWCGRGPALEEDIALTNVALDLIGQTRLWLGYAAEVEG 62 Query: 62 AGRNEDQLAFLRDAHQFSNVLLVEQPNGNYADTLVRQFFFDAAHYFLLEALTTSTDPRIA 121 AGR D LAFLRDAHQF N+LLVEQPNG+YADTL RQF FD HYF LEAL STD RIA Sbjct: 63 AGRTADHLAFLRDAHQFRNLLLVEQPNGSYADTLARQFLFDTWHYFQLEALQRSTDARIA 122 Query: 122 GIAQKSIKEVTYHVRRSGDLIVRLGDGTELSHRMVQQAVDYLWPYTGELFSSDAADLAMQ 181 IA KS+KEVTYHVRRS DL+VRLGDG+E SHR +Q A D LW +TGELF +DAA+ A+ Sbjct: 123 EIAAKSLKEVTYHVRRSADLVVRLGDGSEESHRRMQDAFDDLWMFTGELFEADAAETALA 182 Query: 182 QEGVAPAPDAIRAQWLQHVQEILTEATLQTPPADAWMQSGGKQGKHTEHLGFLLAEMQFL 241 EGV PAP + W +HV E+L EATL+ PA W QSGG+ G+HTEHLG+LLAEMQFL Sbjct: 183 NEGVIPAPGTLAEPWQRHVGEVLEEATLRV-PAGQWAQSGGRHGRHTEHLGYLLAEMQFL 241 Query: 242 QRAYPGATW 250 QRAYPGA W Sbjct: 242 QRAYPGAQW 250 >ref|YP_004681515.1| phenylacetic acid degradation protein PaaC [Cupriavidus necator N-1] gb|AEI80283.1| phenylacetic acid degradation protein PaaC [Cupriavidus necator N-1] Length = 251 Score = 355 bits (912), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 172/247 (69%), Positives = 198/247 (80%), Gaps = 1/247 (0%) Query: 4 KATYVRRLGDNALILSQRLSEWCGKGPALEEDMALTNVALDLIGQARLWLSYAAELEAAG 63 K Y+ RLGD+ L+L QRLSEWCG+GPALEED+ALTNVALDLIGQ RLWL YAAE+E AG Sbjct: 6 KLEYLLRLGDSTLVLGQRLSEWCGRGPALEEDIALTNVALDLIGQTRLWLGYAAEVEGAG 65 Query: 64 RNEDQLAFLRDAHQFSNVLLVEQPNGNYADTLVRQFFFDAAHYFLLEALTTSTDPRIAGI 123 R DQLA+LRDAHQF N+LL EQPNG+YADTL RQF FD HYFLL+ L STD RIA I Sbjct: 66 RTADQLAYLRDAHQFRNLLLAEQPNGSYADTLARQFLFDTWHYFLLDGLQRSTDARIAEI 125 Query: 124 AQKSIKEVTYHVRRSGDLIVRLGDGTELSHRMVQQAVDYLWPYTGELFSSDAADLAMQQE 183 A KS+KEVTYHVRRS DL+VRLGDG+E SHR +Q A D LW ++GELF SDA D A+ Q+ Sbjct: 126 AAKSLKEVTYHVRRSADLVVRLGDGSEESHRRMQDAFDDLWMFSGELFESDAGDAALVQD 185 Query: 184 GVAPAPDAIRAQWLQHVQEILTEATLQTPPADAWMQSGGKQGKHTEHLGFLLAEMQFLQR 243 GV P P ++ W +HV +L EATLQ PA W QSGG+ G+HTEHLG+LLAEMQFLQR Sbjct: 186 GVVPDPASLAEPWQRHVAAVLEEATLQL-PAGTWSQSGGRHGRHTEHLGYLLAEMQFLQR 244 Query: 244 AYPGATW 250 AYPGA+W Sbjct: 245 AYPGASW 251 >ref|YP_840880.1| phenylacetic acid degradation protein C [Ralstonia eutropha H16] emb|CAJ96150.1| phenylacetic acid degradation protein C [Ralstonia eutropha H16] Length = 251 Score = 350 bits (898), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 170/247 (68%), Positives = 196/247 (79%), Gaps = 1/247 (0%) Query: 4 KATYVRRLGDNALILSQRLSEWCGKGPALEEDMALTNVALDLIGQARLWLSYAAELEAAG 63 K Y+ RLGD L+L QRLSEWCG+GPALEED+ALTNVALDLIGQ RLWL YAAE+E AG Sbjct: 6 KLEYLLRLGDATLVLGQRLSEWCGRGPALEEDIALTNVALDLIGQTRLWLGYAAEVEGAG 65 Query: 64 RNEDQLAFLRDAHQFSNVLLVEQPNGNYADTLVRQFFFDAAHYFLLEALTTSTDPRIAGI 123 RN DQ+A+LRDAHQF N LLVEQPNG+YADTL RQF FD HYFLL+ L STD RIA I Sbjct: 66 RNADQMAYLRDAHQFRNPLLVEQPNGSYADTLARQFLFDTWHYFLLDGLQRSTDARIAEI 125 Query: 124 AQKSIKEVTYHVRRSGDLIVRLGDGTELSHRMVQQAVDYLWPYTGELFSSDAADLAMQQE 183 A KS+KEVTYHVRRS DL+VRLGDG+E SHR +Q A + LW ++ ELF SDA D A+ Q Sbjct: 126 AAKSLKEVTYHVRRSADLVVRLGDGSEESHRRMQDAFNDLWMFSDELFESDAGDAALVQA 185 Query: 184 GVAPAPDAIRAQWLQHVQEILTEATLQTPPADAWMQSGGKQGKHTEHLGFLLAEMQFLQR 243 G+ P P ++ W +HV +L EATLQ PA W QSGG+ G+HTEHLG+LLAEMQFLQR Sbjct: 186 GLVPDPASLAEPWQRHVAAVLEEATLQL-PAGTWSQSGGRHGRHTEHLGYLLAEMQFLQR 244 Query: 244 AYPGATW 250 AYPGA+W Sbjct: 245 AYPGASW 251