BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0110.p (329 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777503.1| phenylacetic acid degradation protein [Herba... 623 e-176 ref|YP_002008258.1| phenylacetate-CoA oxygenase subunit paaa [Cu... 599 e-169 ref|YP_297937.1| phenylacetate-CoA oxygenase subunit PaaA [Ralst... 589 e-166 ref|YP_840882.1| phenylacetate-CoA oxygenase subunit PaaA [Ralst... 588 e-166 ref|YP_004681517.1| phenylacetic acid degradation protein PaaA [... 587 e-165 >ref|YP_003777503.1| phenylacetic acid degradation protein [Herbaspirillum seropedicae SmR1] gb|ADJ65595.1| phenylacetic acid degradation protein [Herbaspirillum seropedicae SmR1] Length = 328 Score = 623 bits (1606), Expect = e-176, Method: Compositional matrix adjust. Identities = 288/328 (87%), Positives = 311/328 (94%) Query: 1 MYAQLVETGLKNVRSADEMSEEERAFQARIDDGVKIEPKDWMPDAYRKTLIRQVSQHAHS 60 MYAQ+VETGL VR D+MS EERAFQARI+ GVKIEPKDWMP+AYRKTL+RQ+SQHAHS Sbjct: 1 MYAQMVETGLSKVRGLDDMSPEERAFQARIEAGVKIEPKDWMPEAYRKTLVRQISQHAHS 60 Query: 61 EIVGQLPEANWVTRAPTLERKAVLLAKIQDEAGHGLYLYSAAETLGVTRDQLLADLHSGK 120 EIVGQLPE NWVTRAPTL+RKA+L+AKIQDEAGHGLYLYSAAETLGV+RD LL +LH+G+ Sbjct: 61 EIVGQLPEGNWVTRAPTLQRKAILMAKIQDEAGHGLYLYSAAETLGVSRDDLLDELHAGR 120 Query: 121 AKYSSIFNYPTLSWADMGAIGWLVDGSAIINQIPLCRCSYGPYARAMVRVCKEESFHARQ 180 AKYSSIFNYP LSWADMGAIGWLVDGSAIINQIPLCRCSYGPY+RAMVRVCKEESFHARQ Sbjct: 121 AKYSSIFNYPALSWADMGAIGWLVDGSAIINQIPLCRCSYGPYSRAMVRVCKEESFHARQ 180 Query: 181 GYDIMMSLCKGTPEQKQMAQDALNRWWWPSLMMFGPSDAASVNSAQSAQWRIKLFSNDEL 240 GYDIM++LC+GTPEQKQMAQDALNRWWWP+LMMFGPSDA SVNSAQS QWRIKLFSNDEL Sbjct: 181 GYDIMLALCRGTPEQKQMAQDALNRWWWPALMMFGPSDAESVNSAQSMQWRIKLFSNDEL 240 Query: 241 RQRMVDQTVPQAEYLGLTVPDPDLKWNEETGRYDFGAIDWEEFHNVLRGNGPCNRERLQT 300 RQRMVDQT+PQ EYLGLTVPDPDLKWNEE GRYDFGAI+W+EFHNVLRGNGPCNRERL T Sbjct: 241 RQRMVDQTIPQIEYLGLTVPDPDLKWNEERGRYDFGAINWDEFHNVLRGNGPCNRERLAT 300 Query: 301 RKKAYDDGAWFRDALVAHADKKQTAQAA 328 RKKAYDDGAWFRDALVAHADK+ T +AA Sbjct: 301 RKKAYDDGAWFRDALVAHADKRATRKAA 328 >ref|YP_002008258.1| phenylacetate-CoA oxygenase subunit paaa [Cupriavidus taiwanensis LMG 19424] emb|CAQ72204.1| subunit of multicomponent oxygenase, phenylacetic acid degradation; ring-hydroxylating complex protein 1 [Cupriavidus taiwanensis LMG 19424] Length = 332 Score = 599 bits (1544), Expect = e-169, Method: Compositional matrix adjust. Identities = 280/332 (84%), Positives = 304/332 (91%), Gaps = 3/332 (0%) Query: 1 MYAQLVETGLKNVRSADEMSEEERAFQARIDDGVKIEPKDWMPDAYRKTLIRQVSQHAHS 60 MYAQLVETG +R+ +EM +ERAFQAR+DDG+KIE KDWMP+AYRKTL+RQ+SQHAHS Sbjct: 1 MYAQLVETGATRLRAMEEMDPQERAFQARVDDGIKIEAKDWMPEAYRKTLVRQISQHAHS 60 Query: 61 EIVGQLPEANWVTRAPTLERKAVLLAKIQDEAGHGLYLYSAAETLGVTRDQLLADLHSGK 120 EIVGQLPE NWVTRAPTLERKAVLLAKIQDEAGHGLYLYSAAETLGV+RDQ+L DLHSGK Sbjct: 61 EIVGQLPEGNWVTRAPTLERKAVLLAKIQDEAGHGLYLYSAAETLGVSRDQMLGDLHSGK 120 Query: 121 AKYSSIFNYPTLSWADMGAIGWLVDGSAIINQIPLCRCSYGPYARAMVRVCKEESFHARQ 180 AKYSSIFNYPTLSWAD+G IGWLVDGSAIINQ+PLCRCSYGPYARAMVRVCKEESFH RQ Sbjct: 121 AKYSSIFNYPTLSWADIGMIGWLVDGSAIINQVPLCRCSYGPYARAMVRVCKEESFHQRQ 180 Query: 181 GYDIMMSLCKGTPEQKQMAQDALNRWWWPSLMMFGPSDAASVNSAQSAQWRIKLFSNDEL 240 GYDI++ LC GTPEQKQMAQDALNRWWWP+LMMFGPSD S NSAQS QWRIKLFSNDEL Sbjct: 181 GYDILLKLCNGTPEQKQMAQDALNRWWWPALMMFGPSDGDSPNSAQSMQWRIKLFSNDEL 240 Query: 241 RQRMVDQTVPQAEYLGLTVPDPDLKWNEETGRYDFGAIDWEEFHNVLRGNGPCNRERLQT 300 RQ+MVDQTVPQAEYLGLT+PDP LKWNEE G YDFG IDW EF+NV++GNGPCNR+RL+T Sbjct: 241 RQKMVDQTVPQAEYLGLTIPDPKLKWNEERGHYDFGEIDWSEFYNVIQGNGPCNRDRLRT 300 Query: 301 RKKAYDDGAWFRDALVAHADK---KQTAQAAA 329 R KA+DDGAWFRDALVAHADK KQ QAAA Sbjct: 301 RVKAWDDGAWFRDALVAHADKQAGKQPQQAAA 332 >ref|YP_297937.1| phenylacetate-CoA oxygenase subunit PaaA [Ralstonia eutropha JMP134] gb|AAZ63093.1| Phenylacetate-CoA oxygenase, PaaG subunit [Ralstonia eutropha JMP134] Length = 327 Score = 589 bits (1519), Expect = e-166, Method: Compositional matrix adjust. Identities = 272/327 (83%), Positives = 303/327 (92%) Query: 1 MYAQLVETGLKNVRSADEMSEEERAFQARIDDGVKIEPKDWMPDAYRKTLIRQVSQHAHS 60 MYAQLV+TG +R+ +EM +ER FQAR+D G+KIE KDWMP+AYRKTLIRQ+SQHAHS Sbjct: 1 MYAQLVDTGATRLRAMEEMDPQEREFQARVDAGIKIEAKDWMPEAYRKTLIRQISQHAHS 60 Query: 61 EIVGQLPEANWVTRAPTLERKAVLLAKIQDEAGHGLYLYSAAETLGVTRDQLLADLHSGK 120 EI+GQLPE NWVTRAPTLERKAVLLAKIQDEAGHGLYLYSAAETLG +RD+LL DLHSGK Sbjct: 61 EIIGQLPEGNWVTRAPTLERKAVLLAKIQDEAGHGLYLYSAAETLGASRDELLGDLHSGK 120 Query: 121 AKYSSIFNYPTLSWADMGAIGWLVDGSAIINQIPLCRCSYGPYARAMVRVCKEESFHARQ 180 AKYSSIFNYPTLSWAD+GAIGWLVDGSAIINQ+PLCRCS+GPYARAMVRVCKEESFH RQ Sbjct: 121 AKYSSIFNYPTLSWADIGAIGWLVDGSAIINQVPLCRCSFGPYARAMVRVCKEESFHQRQ 180 Query: 181 GYDIMMSLCKGTPEQKQMAQDALNRWWWPSLMMFGPSDAASVNSAQSAQWRIKLFSNDEL 240 GYDI++ LC+GT EQKQMAQDALNRWWWP+LMMFGPSDA S NSAQS +WRIKLFSNDEL Sbjct: 181 GYDILLKLCQGTAEQKQMAQDALNRWWWPALMMFGPSDADSPNSAQSMKWRIKLFSNDEL 240 Query: 241 RQRMVDQTVPQAEYLGLTVPDPDLKWNEETGRYDFGAIDWEEFHNVLRGNGPCNRERLQT 300 RQ+MVDQTVPQAEYLGLT+PDPDLKWNEE G YDFGAI+W+EF+NVLRGNGPCNR+RL+T Sbjct: 241 RQKMVDQTVPQAEYLGLTIPDPDLKWNEERGHYDFGAINWDEFYNVLRGNGPCNRDRLRT 300 Query: 301 RKKAYDDGAWFRDALVAHADKKQTAQA 327 R KA+DDGAWFR+ALVA ADK++ A A Sbjct: 301 RVKAWDDGAWFREALVARADKQERAAA 327 >ref|YP_840882.1| phenylacetate-CoA oxygenase subunit PaaA [Ralstonia eutropha H16] emb|CAJ96152.1| phenylacetic acid degradation protein A [Ralstonia eutropha H16] Length = 328 Score = 588 bits (1515), Expect = e-166, Method: Compositional matrix adjust. Identities = 272/329 (82%), Positives = 301/329 (91%), Gaps = 1/329 (0%) Query: 1 MYAQLVETGLKNVRSADEMSEEERAFQARIDDGVKIEPKDWMPDAYRKTLIRQVSQHAHS 60 MYAQLVETG +R+ +EM +ER FQAR+D G+KIE KDWMP+AYRKTL+RQ+SQHAHS Sbjct: 1 MYAQLVETGATRLRAMEEMEPQEREFQARVDAGIKIEAKDWMPEAYRKTLVRQISQHAHS 60 Query: 61 EIVGQLPEANWVTRAPTLERKAVLLAKIQDEAGHGLYLYSAAETLGVTRDQLLADLHSGK 120 EIVGQLPE NWVTRAPTLERKAVLLAKIQDEAGHGLYLYSAAETLGV+RDQ+L DLH+GK Sbjct: 61 EIVGQLPEGNWVTRAPTLERKAVLLAKIQDEAGHGLYLYSAAETLGVSRDQMLGDLHTGK 120 Query: 121 AKYSSIFNYPTLSWADMGAIGWLVDGSAIINQIPLCRCSYGPYARAMVRVCKEESFHARQ 180 AKYSSIFNYPTLSWAD+G IGWLVDGSAIINQ+PLCRCS+GPYARAMVRVCKEESFH RQ Sbjct: 121 AKYSSIFNYPTLSWADIGMIGWLVDGSAIINQVPLCRCSFGPYARAMVRVCKEESFHQRQ 180 Query: 181 GYDIMMSLCKGTPEQKQMAQDALNRWWWPSLMMFGPSDAASVNSAQSAQWRIKLFSNDEL 240 GYDI++SLC GTPEQKQMAQDALNRWWWP+LMMFGPSD S NSAQS QWRIKLFSNDEL Sbjct: 181 GYDILLSLCNGTPEQKQMAQDALNRWWWPALMMFGPSDGDSPNSAQSMQWRIKLFSNDEL 240 Query: 241 RQRMVDQTVPQAEYLGLTVPDPDLKWNEETGRYDFGAIDWEEFHNVLRGNGPCNRERLQT 300 RQ+MVDQTVPQAEYLGL +PDP+LKWNEE G YDFG IDW EF+NV++GNGPCNRERL+T Sbjct: 241 RQKMVDQTVPQAEYLGLAIPDPELKWNEERGHYDFGEIDWSEFYNVIQGNGPCNRERLRT 300 Query: 301 RKKAYDDGAWFRDALVAHADKKQTAQAAA 329 R KA+++GAWFRDALV HAD KQ +AAA Sbjct: 301 RVKAWEEGAWFRDALVTHAD-KQAQRAAA 328 >ref|YP_004681517.1| phenylacetic acid degradation protein PaaA [Cupriavidus necator N-1] gb|AEI80285.1| phenylacetic acid degradation protein PaaA [Cupriavidus necator N-1] Length = 328 Score = 587 bits (1512), Expect = e-165, Method: Compositional matrix adjust. Identities = 271/329 (82%), Positives = 301/329 (91%), Gaps = 1/329 (0%) Query: 1 MYAQLVETGLKNVRSADEMSEEERAFQARIDDGVKIEPKDWMPDAYRKTLIRQVSQHAHS 60 MYAQLVETG +R+ +EM +ER FQAR+D G+KIE KDWMP+AYRKTL+RQ+SQHAHS Sbjct: 1 MYAQLVETGATRLRAMEEMEPQEREFQARVDAGIKIEAKDWMPEAYRKTLVRQISQHAHS 60 Query: 61 EIVGQLPEANWVTRAPTLERKAVLLAKIQDEAGHGLYLYSAAETLGVTRDQLLADLHSGK 120 EIVGQLPE NWVTRAPTLERKAVLLAKIQDEAGHGLYLYSAAETLGV+RDQ+L DLH+GK Sbjct: 61 EIVGQLPEGNWVTRAPTLERKAVLLAKIQDEAGHGLYLYSAAETLGVSRDQMLGDLHTGK 120 Query: 121 AKYSSIFNYPTLSWADMGAIGWLVDGSAIINQIPLCRCSYGPYARAMVRVCKEESFHARQ 180 AKYSSIFNYPTLSWAD+G IGWLVDGSAIINQ+PLCRCS+GPYARAMVRVCKEESFH RQ Sbjct: 121 AKYSSIFNYPTLSWADIGMIGWLVDGSAIINQVPLCRCSFGPYARAMVRVCKEESFHQRQ 180 Query: 181 GYDIMMSLCKGTPEQKQMAQDALNRWWWPSLMMFGPSDAASVNSAQSAQWRIKLFSNDEL 240 GYDI++SLC GTPEQKQMAQDALNRWWWP+LMMFGPSD S NSAQS QWRIKLFSNDEL Sbjct: 181 GYDILLSLCNGTPEQKQMAQDALNRWWWPALMMFGPSDGDSPNSAQSMQWRIKLFSNDEL 240 Query: 241 RQRMVDQTVPQAEYLGLTVPDPDLKWNEETGRYDFGAIDWEEFHNVLRGNGPCNRERLQT 300 RQ+MVDQTVPQAEYLGL +PDP+LKWNEE G YDFG IDW EF+NV++GNGPCNR+RL+T Sbjct: 241 RQKMVDQTVPQAEYLGLVIPDPELKWNEERGHYDFGEIDWSEFYNVIQGNGPCNRDRLRT 300 Query: 301 RKKAYDDGAWFRDALVAHADKKQTAQAAA 329 R KA+++GAWFRDALV HAD KQ +AAA Sbjct: 301 RVKAWEEGAWFRDALVTHAD-KQAQRAAA 328