BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0108.p (222 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777501.1| transcription regulator protein [Herbaspiril... 345 2e-93 ref|YP_001561602.1| TetR family transcriptional regulator [Delft... 259 2e-67 ref|YP_998675.1| TetR family transcriptional regulator [Verminep... 257 1e-66 ref|YP_004153660.1| TetR family transcriptional regulator [Vario... 243 1e-62 ref|YP_002943157.1| TetR family transcriptional regulator [Vario... 239 3e-61 >ref|YP_003777501.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65593.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 206 Score = 345 bits (886), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 167/203 (82%), Positives = 181/203 (89%) Query: 10 MPRKRAAGFDNQRDLIIEQAATLFARNGFPGTSMNEVAEACGLSKASLYHYMSDKYQLLM 69 MPRKRAAG+DNQR+ I+EQAA LFARNGF GTSMNEVA ACGLSKASLYHY +DK+QLLM Sbjct: 1 MPRKRAAGYDNQRETIVEQAAALFARNGFVGTSMNEVALACGLSKASLYHYFADKHQLLM 60 Query: 70 FICEGHIERLCALVDEVAQQDLAPEPRLRLMVQRFVEEYADAQNEHRVLTEDVRFLKEED 129 ICE HI+RLCALVDEVAQQDLAPEPRLRL+VQRFVEEY DAQNEHRVLTEDVRFL+ D Sbjct: 61 HICEDHIDRLCALVDEVAQQDLAPEPRLRLLVQRFVEEYRDAQNEHRVLTEDVRFLEPGD 120 Query: 130 QQRIFAGERKVVGAMAQAMIGVRPELDASKMAKPLTMLLFGMINWMFMWLKPDGGLTHER 189 Q+RI GERKVV A+A AM VRPELD S+MAKPL MLLFGMINWMFMWLKPDG LTHER Sbjct: 121 QKRILNGERKVVKAVADAMSAVRPELDRSRMAKPLAMLLFGMINWMFMWLKPDGELTHER 180 Query: 190 MAMVVSDLLFGGIGAVRLEDIGQ 212 MA+VVSDLLFGGIGAV L+ G+ Sbjct: 181 MAVVVSDLLFGGIGAVGLDGAGK 203 >ref|YP_001561602.1| TetR family transcriptional regulator [Delftia acidovorans SPH-1] ref|YP_004485910.1| TetR family transcriptional regulator [Delftia sp. Cs1-4] gb|ABX33217.1| transcriptional regulator, TetR family [Delftia acidovorans SPH-1] gb|AEF87555.1| transcriptional regulator, TetR family [Delftia sp. Cs1-4] Length = 219 Score = 259 bits (663), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 121/211 (57%), Positives = 161/211 (76%), Gaps = 1/211 (0%) Query: 10 MPRKRAAGFDNQRDLIIEQAATLFARNGFPGTSMNEVAEACGLSKASLYHYMSDKYQLLM 69 M R R++G+D+QR+LI+ AA LFAR+G+PGTSMNEVA+ACGLSK ++YHY DKY LL+ Sbjct: 1 MARGRSSGYDDQRELILGHAAALFARSGYPGTSMNEVAQACGLSKPTIYHYFRDKYALLV 60 Query: 70 FICEGHIERLCALVDEVAQQDLAPEPRLRLMVQRFVEEYADAQNEHRVLTEDVRFLKEED 129 I +GH+ RL +LVDEV L PEPRLR++++RFV+EYA A++ HRVLTEDVRFL+++D Sbjct: 61 DITDGHMTRLQSLVDEVQSMGLPPEPRLRMLIERFVQEYAHARHAHRVLTEDVRFLQDDD 120 Query: 130 QQRIFAGERKVVGAMAQAMIGVRPELDASKMAKPLTMLLFGMINWMFMWLKPDGGLTHER 189 +QR+ ER VV AQA+ +RP+ D + ++K L MLLFGM+NWMF WL+PDG L HE Sbjct: 121 RQRVLGKERAVVETFAQAVAQLRPDADGAGLSKALAMLLFGMMNWMFTWLRPDGSLDHEA 180 Query: 190 MAMVVSDLLFGGIGAVRLE-DIGQAEAGERI 219 MA VV+DL GG+ AV+ G AG++I Sbjct: 181 MAPVVADLFLGGLPAVQTPGKPGHQTAGKKI 211 >ref|YP_998675.1| TetR family transcriptional regulator [Verminephrobacter eiseniae EF01-2] gb|ABM59657.1| transcriptional regulator, TetR family [Verminephrobacter eiseniae EF01-2] Length = 212 Score = 257 bits (656), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 117/198 (59%), Positives = 149/198 (75%) Query: 10 MPRKRAAGFDNQRDLIIEQAATLFARNGFPGTSMNEVAEACGLSKASLYHYMSDKYQLLM 69 M R R+ G+D QRD+I AA LFA+ G+P TSMNEVA+ACGLSK +LYHY DKY LL+ Sbjct: 1 MARGRSPGYDEQRDMIARHAAALFAQRGYPATSMNEVAQACGLSKPTLYHYFRDKYHLLL 60 Query: 70 FICEGHIERLCALVDEVAQQDLAPEPRLRLMVQRFVEEYADAQNEHRVLTEDVRFLKEED 129 I + H+ RL ALVD++ Q+ L PEPRLR +++RFV+EYA A++ HRVLTEDV+FL+ ED Sbjct: 61 HIADDHVSRLQALVDDIGQRQLPPEPRLRALIERFVQEYAQARDAHRVLTEDVKFLQPED 120 Query: 130 QQRIFAGERKVVGAMAQAMIGVRPELDASKMAKPLTMLLFGMINWMFMWLKPDGGLTHER 189 + ER VV A A A+ +RPE +A+ + K LTMLLFGMINWMF WL+PDG L HE Sbjct: 121 SALVLNKERAVVAAFANALAQMRPETEAAGLTKALTMLLFGMINWMFTWLRPDGELKHET 180 Query: 190 MAMVVSDLLFGGIGAVRL 207 MA +V+DL FGG+ AV+L Sbjct: 181 MAPIVADLFFGGVVAVQL 198 >ref|YP_004153660.1| TetR family transcriptional regulator [Variovorax paradoxus EPS] gb|ADU35549.1| regulatory protein TetR [Variovorax paradoxus EPS] Length = 216 Score = 243 bits (621), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 116/206 (56%), Positives = 146/206 (70%) Query: 10 MPRKRAAGFDNQRDLIIEQAATLFARNGFPGTSMNEVAEACGLSKASLYHYMSDKYQLLM 69 MPR R+A +D+QR+LI+ QAA LFAR G+P TSMN+VAEAC LSKA+LYHY DK LL+ Sbjct: 1 MPRGRSATYDDQRELILAQAAQLFARRGYPATSMNQVAEACNLSKATLYHYYKDKSSLLI 60 Query: 70 FICEGHIERLCALVDEVAQQDLAPEPRLRLMVQRFVEEYADAQNEHRVLTEDVRFLKEED 129 I E H+ +L ALV E E RLR + R VEEYA AQ+ HRVLT+DVRFL+EED Sbjct: 61 SIAETHVSKLAALVAEEEASTQTDEERLRRFIYRIVEEYAGAQDAHRVLTDDVRFLEEED 120 Query: 130 QQRIFAGERKVVGAMAQAMIGVRPELDASKMAKPLTMLLFGMINWMFMWLKPDGGLTHER 189 ++R+ ER+VV A+A+ +RP + +AKPLTMLLFGMINWMF W+KP G L H Sbjct: 121 RERVLDKEREVVAGFARAVSALRPGAPSDDLAKPLTMLLFGMINWMFTWMKPSGKLDHAA 180 Query: 190 MAMVVSDLLFGGIGAVRLEDIGQAEA 215 +A +V+DL GGIGAV+ D +A Sbjct: 181 IAPIVADLFLGGIGAVKSPDYAAIKA 206 >ref|YP_002943157.1| TetR family transcriptional regulator [Variovorax paradoxus S110] gb|ACS17891.1| transcriptional regulator, TetR family [Variovorax paradoxus S110] Length = 211 Score = 239 bits (609), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 113/197 (57%), Positives = 142/197 (72%) Query: 10 MPRKRAAGFDNQRDLIIEQAATLFARNGFPGTSMNEVAEACGLSKASLYHYMSDKYQLLM 69 MPR R+A +D+QR+ I+ QAA LFAR G+P TSMN+VAEAC LSKA+LYHY DK LL+ Sbjct: 1 MPRGRSATYDDQREFILAQAAQLFARRGYPATSMNQVAEACNLSKATLYHYYKDKSSLLI 60 Query: 70 FICEGHIERLCALVDEVAQQDLAPEPRLRLMVQRFVEEYADAQNEHRVLTEDVRFLKEED 129 I E H+ +L ALV E E RLR + R VEEYA AQ+ HRVLT+DVRFL+EED Sbjct: 61 SIAETHVSKLAALVAEEEASTHTDEERLRRFIYRIVEEYAGAQDAHRVLTDDVRFLEEED 120 Query: 130 QQRIFAGERKVVGAMAQAMIGVRPELDASKMAKPLTMLLFGMINWMFMWLKPDGGLTHER 189 ++R+ ER+VV A+A+ +RP + +AKPLTMLLFGMINWMF W+KP G L H Sbjct: 121 RERVLNQEREVVAGFARAVSALRPGAPSDDLAKPLTMLLFGMINWMFTWMKPGGRLDHAS 180 Query: 190 MAMVVSDLLFGGIGAVR 206 +A +V+DL GGIGAV+ Sbjct: 181 IAPIVADLFLGGIGAVK 197