BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0107.p         (130 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777500.1| branched-chain amino acid ABC transporter pe...   217   4e-55
ref|YP_002943147.1| extracellular ligand-binding receptor [Vario...   199   8e-50
ref|YP_287292.1| extracellular ligand-binding receptor [Dechloro...   199   1e-49
ref|YP_998676.1| extracellular ligand-binding receptor [Verminep...   199   1e-49
ref|YP_003169624.1| Extracellular ligand-binding receptor [Candi...   197   3e-49

>ref|YP_003777500.1| branched-chain amino acid ABC transporter periplasmic protein
           [Herbaspirillum seropedicae SmR1]
 gb|ADJ65592.1| ABC-type branched-chain amino acid transport system, periplasmic
           component protein [Herbaspirillum seropedicae SmR1]
          Length = 381

 Score =  217 bits (553), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 104/118 (88%), Positives = 115/118 (97%)

Query: 1   MHVGVTLSTTGPAASLGIPEKNTIALLPTTIAGQKVNYIVLDDASDTTQAVKNTRRFISE 60
           ++VGVT+STTGPAASLGIPEKNTIALLPTTIAG KVNYI+LDDASDTTQAVKN RRF+SE
Sbjct: 23  INVGVTVSTTGPAASLGIPEKNTIALLPTTIAGHKVNYIILDDASDTTQAVKNARRFVSE 82

Query: 61  NNVDLIIGSTVSPNSLSMIEVVAEAQTPMISLAASARIVEPMDAKKKWVFKTPQNDIM 118
           NNVD+I+GS+VSPNS+SMIEV A+AQTPMISLAA+ARIVEPMDAKKKWVFKTPQNDIM
Sbjct: 83  NNVDVIVGSSVSPNSISMIEVAADAQTPMISLAAAARIVEPMDAKKKWVFKTPQNDIM 140


>ref|YP_002943147.1| extracellular ligand-binding receptor [Variovorax paradoxus S110]
 gb|ACS17881.1| Extracellular ligand-binding receptor [Variovorax paradoxus S110]
          Length = 382

 Score =  199 bits (507), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 94/118 (79%), Positives = 110/118 (93%)

Query: 1   MHVGVTLSTTGPAASLGIPEKNTIALLPTTIAGQKVNYIVLDDASDTTQAVKNTRRFISE 60
           ++VGVTLS TGPAASLGIPEKNTIAL+P TI GQK+NYIVLDDASDTT AV NTR+ I+E
Sbjct: 24  VNVGVTLSATGPAASLGIPEKNTIALMPKTIGGQKINYIVLDDASDTTAAVANTRKLIAE 83

Query: 61  NNVDLIIGSTVSPNSLSMIEVVAEAQTPMISLAASARIVEPMDAKKKWVFKTPQNDIM 118
           N VD+++GST +PNSL+MI+VV+EA+TPMIS+AASARIVEPMDAKK+WVFKTPQNDIM
Sbjct: 84  NKVDIVLGSTTTPNSLAMIDVVSEAKTPMISIAASARIVEPMDAKKQWVFKTPQNDIM 141


>ref|YP_287292.1| extracellular ligand-binding receptor [Dechloromonas aromatica RCB]
 gb|AAZ48822.1| amino acid/amide ABC transporter substrate-binding protein, HAAT
           family [Dechloromonas aromatica RCB]
          Length = 379

 Score =  199 bits (506), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 96/116 (82%), Positives = 109/116 (93%)

Query: 1   MHVGVTLSTTGPAASLGIPEKNTIALLPTTIAGQKVNYIVLDDASDTTQAVKNTRRFISE 60
           ++VGVTLS TGPAASLGIPEKNTI LLP TIAGQKVNYIVLDDASDTT AVKNT++ ISE
Sbjct: 21  INVGVTLSATGPAASLGIPEKNTIDLLPKTIAGQKVNYIVLDDASDTTTAVKNTKKLISE 80

Query: 61  NNVDLIIGSTVSPNSLSMIEVVAEAQTPMISLAASARIVEPMDAKKKWVFKTPQND 116
           +NVDLIIGST +PNSL+M++V AEA+TPMI++AASARIVEPMDAK+KWVFKTPQND
Sbjct: 81  SNVDLIIGSTTTPNSLAMVDVAAEAETPMIAMAASARIVEPMDAKRKWVFKTPQND 136


>ref|YP_998676.1| extracellular ligand-binding receptor [Verminephrobacter eiseniae
           EF01-2]
 gb|ABM59658.1| Extracellular ligand-binding receptor [Verminephrobacter eiseniae
           EF01-2]
          Length = 385

 Score =  199 bits (506), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 93/118 (78%), Positives = 111/118 (94%)

Query: 1   MHVGVTLSTTGPAASLGIPEKNTIALLPTTIAGQKVNYIVLDDASDTTQAVKNTRRFISE 60
           +HVGVTLS TGPAASLGIPEKNT+AL+P +IAG+KV+YIVLDDASDTT AV NTR+ ISE
Sbjct: 27  IHVGVTLSATGPAASLGIPEKNTVALMPRSIAGEKVHYIVLDDASDTTTAVNNTRKLISE 86

Query: 61  NNVDLIIGSTVSPNSLSMIEVVAEAQTPMISLAASARIVEPMDAKKKWVFKTPQNDIM 118
           + VD+I+GS+++PNSL+MI+VVAEA+TPMIS+AASARIVEPMD K+KWVFKTPQNDIM
Sbjct: 87  SKVDIILGSSITPNSLAMIDVVAEARTPMISMAASARIVEPMDPKRKWVFKTPQNDIM 144


>ref|YP_003169624.1| Extracellular ligand-binding receptor [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gb|ACV37695.1| Extracellular ligand-binding receptor [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 384

 Score =  197 bits (502), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 94/116 (81%), Positives = 109/116 (93%)

Query: 1   MHVGVTLSTTGPAASLGIPEKNTIALLPTTIAGQKVNYIVLDDASDTTQAVKNTRRFISE 60
           ++VGVTLS TGPAASLGIPEKNT+ALLPTTIAGQKVNYIVLDDASDTT AVKN R+ I+E
Sbjct: 26  INVGVTLSATGPAASLGIPEKNTVALLPTTIAGQKVNYIVLDDASDTTTAVKNARKLIAE 85

Query: 61  NNVDLIIGSTVSPNSLSMIEVVAEAQTPMISLAASARIVEPMDAKKKWVFKTPQND 116
           N VD+IIGST SPNSL+MI+VVAEA+TPM+++AASARI++PMDAK+ WVFKTPQND
Sbjct: 86  NKVDVIIGSTTSPNSLAMIDVVAEAETPMLAMAASARIIDPMDAKRAWVFKTPQND 141