BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0106.p (202 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777500.1| branched-chain amino acid ABC transporter pe... 346 1e-93 ref|YP_004153650.1| extracellular ligand-binding receptor [Vario... 314 5e-84 gb|EGW62798.1| Extracellular ligand-binding receptor [Dechloroso... 311 5e-83 ref|YP_002943147.1| extracellular ligand-binding receptor [Vario... 305 3e-81 ref|YP_287292.1| extracellular ligand-binding receptor [Dechloro... 302 2e-80 >ref|YP_003777500.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ65592.1| ABC-type branched-chain amino acid transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 381 Score = 346 bits (888), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 167/202 (82%), Positives = 183/202 (90%) Query: 1 LKKVEVVANERFARNDTSATAQALKLMSAKPDAILIAGSGTPAVVPQRALAERGYKGLIY 60 LKK+E+VANERFA D+S TAQALKL++AKPDAILIA SGTPAVVPQRAL ERG+KG IY Sbjct: 180 LKKLELVANERFAPTDSSTTAQALKLVAAKPDAILIAASGTPAVVPQRALKERGFKGQIY 239 Query: 61 QTHGVANSDFLRVGGKLLDNTLLPAGPVLVAAQLPADNPIRKVALGYTAKYEAIHGKDSV 120 QTHGVAN+DFLRVGGK+LD TLLPAGPVLVAAQLPA NPIRKVAL YT KYEA+HGKDSV Sbjct: 240 QTHGVANADFLRVGGKMLDGTLLPAGPVLVAAQLPASNPIRKVALDYTTKYEAVHGKDSV 299 Query: 121 SLFGGYAWDAGLLLQAAAPEALKKGKPGTPEFRAALRDALEASKNVNGVHGVYNMSATDH 180 SLFGGYAWDAG+LL+ A P ALK KPGTPEFRAALRD LEA+K V GVHGVY MS+TDH Sbjct: 300 SLFGGYAWDAGVLLRWAIPVALKGAKPGTPEFRAALRDVLEATKEVTGVHGVYTMSSTDH 359 Query: 181 LGLDQRASVMVKIVNGAWKYQP 202 LGLDQRA+VMVKIV+GAW+YQP Sbjct: 360 LGLDQRAAVMVKIVDGAWQYQP 381 >ref|YP_004153650.1| extracellular ligand-binding receptor [Variovorax paradoxus EPS] gb|ADU35539.1| Extracellular ligand-binding receptor [Variovorax paradoxus EPS] Length = 382 Score = 314 bits (804), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 146/202 (72%), Positives = 171/202 (84%) Query: 1 LKKVEVVANERFARNDTSATAQALKLMSAKPDAILIAGSGTPAVVPQRALAERGYKGLIY 60 LKK+ VVANERF+R+DTS T QALK+M+AKPDA+L+ GSGTPA +PQ+ L ERGY G +Y Sbjct: 181 LKKITVVANERFSRSDTSVTGQALKIMAAKPDAVLVGGSGTPAALPQKTLKERGYTGKMY 240 Query: 61 QTHGVANSDFLRVGGKLLDNTLLPAGPVLVAAQLPADNPIRKVALGYTAKYEAIHGKDSV 120 QTHGVANSDFLRVGGK ++ T LPAGPVLVAAQLPADNP++K AL Y YEA +GK +V Sbjct: 241 QTHGVANSDFLRVGGKDVEGTFLPAGPVLVAAQLPADNPVKKSALAYVTAYEAANGKGTV 300 Query: 121 SLFGGYAWDAGLLLQAAAPEALKKGKPGTPEFRAALRDALEASKNVNGVHGVYNMSATDH 180 S FG +AWDAGLL+ +A P ALKK +PGTPEFRAALRDALE +K+V+G HGV+NM+ DH Sbjct: 301 STFGAHAWDAGLLMTSAVPVALKKAQPGTPEFRAALRDALEQTKDVSGAHGVFNMTEKDH 360 Query: 181 LGLDQRASVMVKIVNGAWKYQP 202 LGLDQRA VMVKI NGAWKYQP Sbjct: 361 LGLDQRARVMVKIENGAWKYQP 382 >gb|EGW62798.1| Extracellular ligand-binding receptor [Dechlorosoma suillum PS] Length = 389 Score = 311 bits (796), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 145/201 (72%), Positives = 170/201 (84%) Query: 2 KKVEVVANERFARNDTSATAQALKLMSAKPDAILIAGSGTPAVVPQRALAERGYKGLIYQ 61 +K+ +VANERF+R+DTS T Q LK+++A+PDA+LI G+GTPA +PQ+ L ERGYKGLIYQ Sbjct: 189 RKLRLVANERFSRSDTSVTGQVLKVLAARPDAVLIGGAGTPAALPQKTLRERGYKGLIYQ 248 Query: 62 THGVANSDFLRVGGKLLDNTLLPAGPVLVAAQLPADNPIRKVALGYTAKYEAIHGKDSVS 121 THGVANSDFLRVGGK ++ TLLPAGPVLVAAQLPADNPIRKVAL Y +YEA+HGK SVS Sbjct: 249 THGVANSDFLRVGGKEVEGTLLPAGPVLVAAQLPADNPIRKVALDYVGRYEAVHGKGSVS 308 Query: 122 LFGGYAWDAGLLLQAAAPEALKKGKPGTPEFRAALRDALEASKNVNGVHGVYNMSATDHL 181 FG + WDAGLLLQ A P ALKK +PG+PEFR ALR+ALE +++V G HGVYNM TDHL Sbjct: 309 TFGAHVWDAGLLLQHAVPLALKKAQPGSPEFRKALREALENTRDVVGCHGVYNMGPTDHL 368 Query: 182 GLDQRASVMVKIVNGAWKYQP 202 G DQRA VMV+I NGAWK QP Sbjct: 369 GFDQRARVMVRIDNGAWKLQP 389 >ref|YP_002943147.1| extracellular ligand-binding receptor [Variovorax paradoxus S110] gb|ACS17881.1| Extracellular ligand-binding receptor [Variovorax paradoxus S110] Length = 382 Score = 305 bits (781), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 142/202 (70%), Positives = 169/202 (83%) Query: 1 LKKVEVVANERFARNDTSATAQALKLMSAKPDAILIAGSGTPAVVPQRALAERGYKGLIY 60 LKK+++VANER+AR DTS T QALK+M+AK DA+L+AGSGTPA +PQ+ L ERGY G +Y Sbjct: 181 LKKLKIVANERYARTDTSVTGQALKIMAAKADAVLVAGSGTPAALPQKTLKERGYTGKMY 240 Query: 61 QTHGVANSDFLRVGGKLLDNTLLPAGPVLVAAQLPADNPIRKVALGYTAKYEAIHGKDSV 120 QTHGVAN+DFLRVGGK ++ T LPAGPVLVA QLPA +P++K A+ Y YEA +GK+SV Sbjct: 241 QTHGVANADFLRVGGKDVEGTFLPAGPVLVAEQLPASHPVKKSAMAYVTAYEAANGKNSV 300 Query: 121 SLFGGYAWDAGLLLQAAAPEALKKGKPGTPEFRAALRDALEASKNVNGVHGVYNMSATDH 180 S FG +AWDAGLL+ +A P ALKK +PGTPEFRAALRDALE K V+G HGV+NM+A DH Sbjct: 301 STFGAHAWDAGLLMTSAVPVALKKAQPGTPEFRAALRDALEQVKEVSGAHGVFNMTANDH 360 Query: 181 LGLDQRASVMVKIVNGAWKYQP 202 LGLDQRA VMVKI NGAWKYQP Sbjct: 361 LGLDQRARVMVKIENGAWKYQP 382 >ref|YP_287292.1| extracellular ligand-binding receptor [Dechloromonas aromatica RCB] gb|AAZ48822.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Dechloromonas aromatica RCB] Length = 379 Score = 302 bits (773), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 140/199 (70%), Positives = 168/199 (84%) Query: 1 LKKVEVVANERFARNDTSATAQALKLMSAKPDAILIAGSGTPAVVPQRALAERGYKGLIY 60 ++K+++VANERF R DTS T Q LK+MSAKPDA+LI G+GTPA +PQ++L E+GYKG+IY Sbjct: 178 VRKIKLVANERFNRVDTSVTGQVLKVMSAKPDAVLIGGAGTPAALPQKSLKEKGYKGIIY 237 Query: 61 QTHGVANSDFLRVGGKLLDNTLLPAGPVLVAAQLPADNPIRKVALGYTAKYEAIHGKDSV 120 QTHGVAN+DFLRV GK ++T+LP GPVLVAAQLP DNP++K A+ Y KYEA+HGK SV Sbjct: 238 QTHGVANNDFLRVCGKDCEDTVLPTGPVLVAAQLPTDNPVKKSAMDYVGKYEAVHGKGSV 297 Query: 121 SLFGGYAWDAGLLLQAAAPEALKKGKPGTPEFRAALRDALEASKNVNGVHGVYNMSATDH 180 + FGGYAWDAG+LL AAP ALKK +PG+ EFRAALRDALEA++NV G HGVYNMSA DH Sbjct: 298 NAFGGYAWDAGILLANAAPVALKKAQPGSKEFRAALRDALEATRNVAGSHGVYNMSANDH 357 Query: 181 LGLDQRASVMVKIVNGAWK 199 LGLDQRA VMV I +G WK Sbjct: 358 LGLDQRARVMVNIKDGGWK 376