BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0105.p (654 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001792587.1| bifunctional aldehyde dehydrogenase/enoyl-Co... 412 e-112 ref|YP_003777499.1| ring-opening enzyme protein [Herbaspirillum ... 396 e-108 ref|YP_004153646.1| phenylacetic acid degradation protein paan [... 395 e-107 ref|YP_002943143.1| bifunctional aldehyde dehydrogenase/enoyl-Co... 384 e-104 gb|ADR60129.1| Protein maoC [Pseudomonas putida BIRD-1] 384 e-104 >ref|YP_001792587.1| bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase [Leptothrix cholodnii SP-6] gb|ACB35822.1| phenylacetic acid degradation protein paaN [Leptothrix cholodnii SP-6] Length = 682 Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust. Identities = 216/270 (80%), Positives = 237/270 (87%) Query: 3 GQDVVTFTGSADTAAKLRVHPNLIRNSVPFNAEADSLNCAILGPDVTPDDEEFDLFVKEV 62 G DVVTFTGSADTAAKLRVHPN++R+S+PFNAEADSLNCAIL PDV+PDDEEF+LFVKEV Sbjct: 225 GSDVVTFTGSADTAAKLRVHPNIVRHSIPFNAEADSLNCAILAPDVSPDDEEFELFVKEV 284 Query: 63 AREMTTKAGQKCTAIRRAIVPRQHIDAVAERLRARLAKTVVGDPSLEQVRMGPLASKAQQ 122 AREMT KAGQKCTAIRRAIVPRQH+DAVAE+LRARLAKT VGDPSLE VRMGPLAS AQQ Sbjct: 285 AREMTVKAGQKCTAIRRAIVPRQHLDAVAEKLRARLAKTTVGDPSLEGVRMGPLASHAQQ 344 Query: 123 HDVAERLALLKAGNEQIFGAGDGFNPVGDAVGDGAFFAPTLLLCRDGVANPAVHDVEAFG 182 DVAER+ALL G EQ++GA DG P G V +GAFF+PTLLL R + + AVHDVEAFG Sbjct: 345 ADVAERVALLLQGCEQVYGAKDGAAPQGTGVAEGAFFSPTLLLSRQPLQHDAVHDVEAFG 404 Query: 183 PVSTLIAYDDFDGALDLAARGRGSLVGSLVTHDPKVAAKAIPIAAAWHGRLLILDREAAV 242 PVSTL+AYD D AL LAARGRGSLVG+LVT P +AA+ IP+AAA HGRLL+LDREAAV Sbjct: 405 PVSTLMAYDGIDEALALAARGRGSLVGTLVTKSPAIAARVIPVAAALHGRLLVLDREAAV 464 Query: 243 ESTGHGSPLPQLKHGGPGRAGGGEELGGAR 272 ESTGHGSPLP LKHGGPGRAGGGEELGG R Sbjct: 465 ESTGHGSPLPMLKHGGPGRAGGGEELGGMR 494 Score = 329 bits (843), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 155/185 (83%), Positives = 171/185 (92%) Query: 469 RRYLQRAAVQGSPTMLAAVTGEHVRGAAVRESDIHPFRHHFEDLQIGDSLLTHRRTVSEA 528 + YLQR AVQGSPTMLAA+TGEHVRGA V E+++HPFR HFE+LQIG+SLLTHRRTV+EA Sbjct: 497 KHYLQRTAVQGSPTMLAAITGEHVRGAQVIETEVHPFRRHFEELQIGESLLTHRRTVTEA 556 Query: 529 DIVNFGGLSGDYFYMHFDEIAAKESPFGKRIAHGYFVLSAAAGLFVSPAPGPVLANYGLD 588 D+VNFGG+SGDYFYMHFD IAAK++ FG+RIAHGYFVLSAAAGLFVSPAPGPVLANYGLD Sbjct: 557 DLVNFGGISGDYFYMHFDAIAAKDTQFGQRIAHGYFVLSAAAGLFVSPAPGPVLANYGLD 616 Query: 589 TLRFVKPVGIGDTIRARLTCKRKIDRNKKDVNGVGQGVVAWDVEVTNQDGELVASYDILT 648 LRFVKPV IGDTI+ARLT KRKIDRN+ D GVGQGVVAWDVEVTNQ GELVASYDILT Sbjct: 617 ALRFVKPVAIGDTIQARLTAKRKIDRNRVDAKGVGQGVVAWDVEVTNQLGELVASYDILT 676 Query: 649 LVAKK 653 LVAK+ Sbjct: 677 LVAKR 681 >ref|YP_003777499.1| ring-opening enzyme protein [Herbaspirillum seropedicae SmR1] gb|ADJ65591.1| ring-opening enzyme protein [Herbaspirillum seropedicae SmR1] Length = 686 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 218/269 (81%), Positives = 235/269 (87%) Query: 4 QDVVTFTGSADTAAKLRVHPNLIRNSVPFNAEADSLNCAILGPDVTPDDEEFDLFVKEVA 63 QDVVTFTGSADTAAKLR HPNLI NS+PFNAEADSLNCAILGPD+T DDEEFDLFVKEVA Sbjct: 228 QDVVTFTGSADTAAKLRAHPNLIANSIPFNAEADSLNCAILGPDITADDEEFDLFVKEVA 287 Query: 64 REMTTKAGQKCTAIRRAIVPRQHIDAVAERLRARLAKTVVGDPSLEQVRMGPLASKAQQH 123 REMTTKAGQKCTAIRRAIVPR+H+DAVAERL ARL+K VVGDP+LE VRMGPLAS+AQQ Sbjct: 288 REMTTKAGQKCTAIRRAIVPRRHVDAVAERLAARLSKIVVGDPALETVRMGPLASRAQQR 347 Query: 124 DVAERLALLKAGNEQIFGAGDGFNPVGDAVGDGAFFAPTLLLCRDGVANPAVHDVEAFGP 183 DV ER+ALL+ + I GAG F P G VG+GAFFAPTLLL RD A VH+VEAFGP Sbjct: 348 DVEERVALLRHSADLILGAGSAFAPQGQGVGEGAFFAPTLLLARDTAAGSPVHEVEAFGP 407 Query: 184 VSTLIAYDDFDGALDLAARGRGSLVGSLVTHDPKVAAKAIPIAAAWHGRLLILDREAAVE 243 VSTL+ YDD D AL LAARGRGSLV SLVT P VAA+AIP+AAAWHGRLL+LDREAA E Sbjct: 408 VSTLMPYDDLDEALALAARGRGSLVASLVTRTPAVAARAIPVAAAWHGRLLVLDREAAAE 467 Query: 244 STGHGSPLPQLKHGGPGRAGGGEELGGAR 272 STGHGSPLPQLKHGGPGRAGGGEELGG+R Sbjct: 468 STGHGSPLPQLKHGGPGRAGGGEELGGSR 496 Score = 350 bits (897), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 167/185 (90%), Positives = 175/185 (94%) Query: 469 RRYLQRAAVQGSPTMLAAVTGEHVRGAAVRESDIHPFRHHFEDLQIGDSLLTHRRTVSEA 528 + YLQR AVQGSPTMLAAV GEHVRGA VRES IHPFRH+FEDLQIGDSL THRRTV+EA Sbjct: 499 KHYLQRTAVQGSPTMLAAVVGEHVRGARVRESGIHPFRHYFEDLQIGDSLTTHRRTVTEA 558 Query: 529 DIVNFGGLSGDYFYMHFDEIAAKESPFGKRIAHGYFVLSAAAGLFVSPAPGPVLANYGLD 588 DIVNFG LSGD+FYMHFDEIAA++SPFGKRIAHGYFVLSAAAGLFVSPAPGPVLANYGLD Sbjct: 559 DIVNFGCLSGDHFYMHFDEIAARQSPFGKRIAHGYFVLSAAAGLFVSPAPGPVLANYGLD 618 Query: 589 TLRFVKPVGIGDTIRARLTCKRKIDRNKKDVNGVGQGVVAWDVEVTNQDGELVASYDILT 648 TLRFVKPVGIGDTI ARLTCKRKIDRNKKD NG GQGVVAWDVEV+NQ+GELVASYDILT Sbjct: 619 TLRFVKPVGIGDTISARLTCKRKIDRNKKDANGQGQGVVAWDVEVSNQEGELVASYDILT 678 Query: 649 LVAKK 653 LVAKK Sbjct: 679 LVAKK 683 >ref|YP_004153646.1| phenylacetic acid degradation protein paan [Variovorax paradoxus EPS] gb|ADU35535.1| phenylacetic acid degradation protein paaN [Variovorax paradoxus EPS] Length = 683 Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust. Identities = 206/254 (81%), Positives = 224/254 (88%) Query: 3 GQDVVTFTGSADTAAKLRVHPNLIRNSVPFNAEADSLNCAILGPDVTPDDEEFDLFVKEV 62 G DVVTFTGSADTAAKLRVHPN++R S+PFNAEADSLNCAIL PDVTPDDEEFDLFVKEV Sbjct: 223 GPDVVTFTGSADTAAKLRVHPNIVRQSIPFNAEADSLNCAILAPDVTPDDEEFDLFVKEV 282 Query: 63 AREMTTKAGQKCTAIRRAIVPRQHIDAVAERLRARLAKTVVGDPSLEQVRMGPLASKAQQ 122 AREMTTKAGQKCTAIRRAIVPRQH+DAVAERLRARLAKTV+GDPS E+VRMG LAS AQQ Sbjct: 283 AREMTTKAGQKCTAIRRAIVPRQHLDAVAERLRARLAKTVIGDPSREEVRMGALASHAQQ 342 Query: 123 HDVAERLALLKAGNEQIFGAGDGFNPVGDAVGDGAFFAPTLLLCRDGVANPAVHDVEAFG 182 DVAER+A L G E ++G DGF+PVGD V +GAFFAPTLLL R + + A HDVEAFG Sbjct: 343 ADVAERVATLLQGAELVYGGRDGFSPVGDGVSEGAFFAPTLLLSRKPLEHDAAHDVEAFG 402 Query: 183 PVSTLIAYDDFDGALDLAARGRGSLVGSLVTHDPKVAAKAIPIAAAWHGRLLILDREAAV 242 PVSTL+ YD D AL LAARGRGSLVG+LVT DP +AAKAIP+AAAWHGRLL+LDREAA Sbjct: 403 PVSTLMPYDGIDEALALAARGRGSLVGTLVTRDPAIAAKAIPVAAAWHGRLLVLDREAAT 462 Query: 243 ESTGHGSPLPQLKH 256 ESTGHGSPLPQLKH Sbjct: 463 ESTGHGSPLPQLKH 476 Score = 353 bits (905), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 167/185 (90%), Positives = 179/185 (96%) Query: 469 RRYLQRAAVQGSPTMLAAVTGEHVRGAAVRESDIHPFRHHFEDLQIGDSLLTHRRTVSEA 528 + YLQRAAVQGSPTMLAA+TGEHVRGAAVRES++HPFR +FEDL+IGDSLLTHRRTV EA Sbjct: 495 KHYLQRAAVQGSPTMLAAITGEHVRGAAVRESEVHPFRSYFEDLRIGDSLLTHRRTVGEA 554 Query: 529 DIVNFGGLSGDYFYMHFDEIAAKESPFGKRIAHGYFVLSAAAGLFVSPAPGPVLANYGLD 588 DIV FGG+SGDYFYMHFDE+AAKESPFGKRIAHGYFVLSAAAGLFVSPAPGPVLANYGLD Sbjct: 555 DIVAFGGISGDYFYMHFDEVAAKESPFGKRIAHGYFVLSAAAGLFVSPAPGPVLANYGLD 614 Query: 589 TLRFVKPVGIGDTIRARLTCKRKIDRNKKDVNGVGQGVVAWDVEVTNQDGELVASYDILT 648 TLRFVKPVGIGDTIRARLTCKRKIDRNKKD +G GQGVVAWDVEVTNQDG++VASYDILT Sbjct: 615 TLRFVKPVGIGDTIRARLTCKRKIDRNKKDASGQGQGVVAWDVEVTNQDGDVVASYDILT 674 Query: 649 LVAKK 653 LV+KK Sbjct: 675 LVSKK 679 >ref|YP_002943143.1| bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase [Variovorax paradoxus S110] gb|ACS17877.1| phenylacetic acid degradation protein paaN [Variovorax paradoxus S110] Length = 686 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 203/257 (78%), Positives = 222/257 (86%), Gaps = 3/257 (1%) Query: 3 GQDVVTFTGSADTAAKLRVHPNLIRNSVPFNAEADSLNCAILGPDVTPDDEEFDLFVKEV 62 G DVVTFTGSADTA +LRVHPNL+R+S+PFNAEADSLNCAIL PDVTPDDEEFDLFVKEV Sbjct: 223 GADVVTFTGSADTAVRLRVHPNLVRHSIPFNAEADSLNCAILAPDVTPDDEEFDLFVKEV 282 Query: 63 AREMTTKAGQKCTAIRRAIVPRQHIDAVAERLRARLAKTVVGDPSLEQVRMGPLASKAQQ 122 AREMT KAGQKCTAIRRAIVPRQH+DAVAERLRARLAKTV+GDPS E+VRMG LAS AQQ Sbjct: 283 AREMTVKAGQKCTAIRRAIVPRQHLDAVAERLRARLAKTVIGDPSREEVRMGALASHAQQ 342 Query: 123 HDVAERLALLKAGNEQIFGAGDGFNPVGDAVGDGAFFAPTLLLCRDGVANPAVHDVEAFG 182 DVAER+A L G E ++G DGF+PVGD V GAFFAPTLLL R + + A HDVEAFG Sbjct: 343 ADVAERVATLLQGAELVYGERDGFSPVGDGVAGGAFFAPTLLLSRRPLEHDAAHDVEAFG 402 Query: 183 PVSTLIAY---DDFDGALDLAARGRGSLVGSLVTHDPKVAAKAIPIAAAWHGRLLILDRE 239 PVSTL+ Y D D AL LAARGRGSLVG+LVT DP +AA+AIP+AAAWHGRLL+LDRE Sbjct: 403 PVSTLMPYDSADSIDEALALAARGRGSLVGTLVTRDPAIAARAIPVAAAWHGRLLVLDRE 462 Query: 240 AAVESTGHGSPLPQLKH 256 AA ESTGHGSPLPQLKH Sbjct: 463 AAAESTGHGSPLPQLKH 479 Score = 354 bits (908), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 168/185 (90%), Positives = 179/185 (96%) Query: 469 RRYLQRAAVQGSPTMLAAVTGEHVRGAAVRESDIHPFRHHFEDLQIGDSLLTHRRTVSEA 528 + YLQRAAVQGSPTMLAA+TGEHVRGAAVRES++HPFR HFEDL+IGDSLLTHRRTV EA Sbjct: 498 KHYLQRAAVQGSPTMLAAITGEHVRGAAVRESEVHPFRRHFEDLRIGDSLLTHRRTVGEA 557 Query: 529 DIVNFGGLSGDYFYMHFDEIAAKESPFGKRIAHGYFVLSAAAGLFVSPAPGPVLANYGLD 588 DIV FGG+SGDYFYMHFDE+AA+ESPFGKRIAHGYFVLSAAAGLFVSPAPGPVLANYGLD Sbjct: 558 DIVAFGGISGDYFYMHFDEVAARESPFGKRIAHGYFVLSAAAGLFVSPAPGPVLANYGLD 617 Query: 589 TLRFVKPVGIGDTIRARLTCKRKIDRNKKDVNGVGQGVVAWDVEVTNQDGELVASYDILT 648 TLRFVKPVGIGDTIRARLTCKRKIDRN+KD +G GQGVVAWDVEVTNQDGELVASYDILT Sbjct: 618 TLRFVKPVGIGDTIRARLTCKRKIDRNRKDASGQGQGVVAWDVEVTNQDGELVASYDILT 677 Query: 649 LVAKK 653 LV+KK Sbjct: 678 LVSKK 682 >gb|ADR60129.1| Protein maoC [Pseudomonas putida BIRD-1] Length = 684 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 193/256 (75%), Positives = 212/256 (82%) Query: 1 MLGQDVVTFTGSADTAAKLRVHPNLIRNSVPFNAEADSLNCAILGPDVTPDDEEFDLFVK 60 + GQDVVTFTGSADTAAKLRV PNLIRNSVPF AEADSLNCAILGPDV+PD EEFDL++K Sbjct: 224 LQGQDVVTFTGSADTAAKLRVTPNLIRNSVPFTAEADSLNCAILGPDVSPDSEEFDLYIK 283 Query: 61 EVAREMTTKAGQKCTAIRRAIVPRQHIDAVAERLRARLAKTVVGDPSLEQVRMGPLASKA 120 EV REMTTKAGQKCTAIRRAIVP +H+DAVA RLR RL+K VVGDPSLE VRMG LAS Sbjct: 284 EVVREMTTKAGQKCTAIRRAIVPAKHLDAVATRLRERLSKVVVGDPSLEGVRMGALASHD 343 Query: 121 QQHDVAERLALLKAGNEQIFGAGDGFNPVGDAVGDGAFFAPTLLLCRDGVANPAVHDVEA 180 QQ DV ER+ L +Q+FGA DGF P G+ V +GAFFAPTLL RD A HD+EA Sbjct: 344 QQRDVGERVRSLLQTCDQLFGASDGFAPRGEGVAEGAFFAPTLLQARDPHAEGGAHDIEA 403 Query: 181 FGPVSTLIAYDDFDGALDLAARGRGSLVGSLVTHDPKVAAKAIPIAAAWHGRLLILDREA 240 FGPVSTL+AYDD D AL LAARG+GSLV +LVT D VA KAIP+AAAWHGRLL+LD +A Sbjct: 404 FGPVSTLMAYDDLDEALALAARGKGSLVATLVTADRSVATKAIPVAAAWHGRLLVLDSQA 463 Query: 241 AVESTGHGSPLPQLKH 256 A ESTGHGSPLPQLKH Sbjct: 464 AKESTGHGSPLPQLKH 479 Score = 307 bits (786), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 148/185 (80%), Positives = 163/185 (88%) Query: 469 RRYLQRAAVQGSPTMLAAVTGEHVRGAAVRESDIHPFRHHFEDLQIGDSLLTHRRTVSEA 528 + YLQRAAVQGSP+ML AVTGE+VRG V E+++HPFR +FE L+IG+SLLTHRRTV+EA Sbjct: 498 KHYLQRAAVQGSPSMLTAVTGEYVRGGEVIETEVHPFRRYFEQLRIGESLLTHRRTVTEA 557 Query: 529 DIVNFGGLSGDYFYMHFDEIAAKESPFGKRIAHGYFVLSAAAGLFVSPAPGPVLANYGLD 588 D+VNFG LSGD+FYMHFDEIAAK S FGKRIAHGYFVLSAAAGLFVSP GPVLANYGLD Sbjct: 558 DLVNFGCLSGDHFYMHFDEIAAKASQFGKRIAHGYFVLSAAAGLFVSPGAGPVLANYGLD 617 Query: 589 TLRFVKPVGIGDTIRARLTCKRKIDRNKKDVNGVGQGVVAWDVEVTNQDGELVASYDILT 648 TLRF+ PVGIGDTI+ARLTCKRKID+ K G QGVVAWDVEVTNQ GELVASYDILT Sbjct: 618 TLRFINPVGIGDTIQARLTCKRKIDQGKTSPLGQPQGVVAWDVEVTNQLGELVASYDILT 677 Query: 649 LVAKK 653 LV KK Sbjct: 678 LVLKK 682